Nrg1 (neuregulin 1) - Rat Genome Database

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Gene: Nrg1 (neuregulin 1) Rattus norvegicus
Analyze
Symbol: Nrg1
Name: neuregulin 1
RGD ID: 621341
Description: Predicted to enable protein tyrosine kinase activator activity; signaling receptor binding activity; and transcription coregulator activity. Involved in several processes, including negative regulation of corticosterone secretion; positive regulation of Schwann cell proliferation; and response to progesterone. Located in extracellular space and synapse. Used to study sciatic neuropathy. Biomarker of diabetic neuropathy; median neuropathy; schizophrenia; and visual epilepsy. Human ortholog(s) of this gene implicated in several diseases, including bipolar disorder; cerebral malaria; dementia; middle cerebral artery infarction; and psychotic disorder (multiple). Orthologous to human NRG1 (neuregulin 1); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; glypican signaling pathway; INTERACTS WITH (+)-schisandrin B; 1-benzylpiperazine; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: glial growth factor; neuregulin 1 type III beta 3; pro-neuregulin-1, membrane-bound isoform; pro-NRG1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Nrg1Tn(sb-T2/Bart3)2.183Mcwi  
Genetic Models: F344-Nrg1Tn(sb-T2/Bart3)2.183Mcwi
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21659,250,658 - 60,303,024 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1659,250,854 - 60,296,884 (+)Ensembl
Rnor_6.01662,969,573 - 64,065,063 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1663,837,216 - 64,057,434 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01662,632,432 - 63,718,738 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41663,937,796 - 64,126,183 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11663,937,870 - 64,126,262 (+)NCBI
Celera1657,283,140 - 58,311,856 (+)NCBICelera
Cytogenetic Map16q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
1-benzylpiperazine  (EXP)
1-naphthyl isothiocyanate  (EXP)
1-nitropyrene  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-nitrofluorene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
AACOCF3  (ISO)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
aluminium atom  (ISO)
aluminium(0)  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
androgen antagonist  (EXP)
antimycin A  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
butan-1-ol  (ISO)
butanal  (ISO)
Butylparaben  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbofuran  (EXP)
carbon nanotube  (ISO)
celecoxib  (ISO)
choline  (ISO)
clozapine  (EXP,ISO)
cobalt dichloride  (ISO)
colforsin daropate hydrochloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
D-glucose  (EXP)
DDE  (EXP)
decabromodiphenyl ether  (EXP)
dexamethasone  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
diethylstilbestrol  (EXP)
dimethylarsinic acid  (ISO)
dimethylarsinous acid  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (EXP)
entinostat  (ISO)
enzacamene  (EXP)
epoxiconazole  (EXP)
etoposide  (ISO)
fenamidone  (ISO)
fenvalerate  (EXP)
fluoranthene  (ISO)
flutamide  (EXP)
folic acid  (ISO)
fonofos  (ISO)
fulvestrant  (ISO)
furan  (EXP,ISO)
gemcitabine  (ISO)
glucose  (EXP)
haloperidol  (EXP)
Heliotrine  (EXP)
hydrogen peroxide  (EXP)
indole-3-methanol  (EXP)
ketamine  (ISO)
L-methionine  (ISO)
linuron  (EXP)
LY294002  (EXP,ISO)
maneb  (ISO)
manganese(II) chloride  (EXP)
methamphetamine  (ISO)
methapyrilene  (EXP,ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mifepristone  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (EXP)
N-nitrosomorpholine  (EXP)
N-tosyl-L-phenylalanyl chloromethyl ketone  (EXP)
naphthalene  (EXP)
nickel atom  (ISO)
nickel dichloride  (ISO)
nickel sulfate  (ISO)
ochratoxin A  (ISO)
orphenadrine  (EXP)
oxaliplatin  (EXP)
ozone  (EXP)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
parathion  (ISO)
PCB138  (ISO)
pentane-2,3-dione  (EXP)
perfluorooctanoic acid  (EXP,ISO)
permethrin  (EXP)
phenobarbital  (ISO)
phenylephrine  (EXP)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
picoxystrobin  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
prochloraz  (EXP)
procymidone  (EXP)
progesterone  (ISO)
propanal  (ISO)
propylparaben  (ISO)
prostaglandin E2  (ISO)
Ptaquiloside  (ISO)
pyrimidifen  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
risperidone  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
senecionine  (EXP)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tebufenpyrad  (ISO)
temozolomide  (ISO)
tephrosin  (ISO)
terbufos  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
topotecan  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zinc sulfate  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
activation of protein kinase B activity  (IEA,ISO,ISS)
activation of transmembrane receptor protein tyrosine kinase activity  (IBA,ISO)
animal organ development  (IBA)
axon ensheathment  (ISO)
brain development  (ISO)
cardiac conduction system development  (ISO)
cardiac muscle cell differentiation  (ISO)
cardiac muscle cell myoblast differentiation  (IEA,ISO)
cardiac muscle tissue development  (ISO)
cell differentiation  (IBA)
cell migration  (ISO)
cell morphogenesis  (ISO)
cell population proliferation  (ISO)
cellular protein complex disassembly  (ISO)
chemorepulsion involved in interneuron migration from the subpallium to the cortex  (IEA,ISO)
endocardial cell differentiation  (IEA,ISO)
ERBB signaling pathway  (ISO,ISS)
ERBB3 signaling pathway  (IEA,ISO)
ERBB4 signaling pathway  (ISO)
glial cell differentiation  (ISO)
glial cell fate commitment  (IEA,ISO)
heart development  (ISO)
intracellular signal transduction  (IBA)
locomotory behavior  (IEA,ISO)
MAPK cascade  (ISO)
memory  (IMP)
muscle organ development  (ISO)
myelination in peripheral nervous system  (ISO)
negative regulation of cardiac muscle cell apoptotic process  (ISO)
negative regulation of corticosterone secretion  (IMP)
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand  (ISO)
negative regulation of neuron migration  (ISO)
negative regulation of protein catabolic process  (ISO)
negative regulation of secretion  (IEA,ISO)
negative regulation of transcription, DNA-templated  (IEA,ISO)
nervous system development  (IBA,IEA,ISO)
neurogenesis  (ISO)
neuron fate commitment  (IEA,ISO)
neurotransmitter receptor metabolic process  (IEA,ISO)
odontogenesis  (IEP)
oligodendrocyte differentiation  (IEA,ISO)
peripheral nervous system development  (ISO)
positive regulation of axon extension  (ISO)
positive regulation of axon regeneration  (IDA)
positive regulation of calcineurin-NFAT signaling cascade  (ISO)
positive regulation of cardiac muscle cell differentiation  (ISO)
positive regulation of cardiac muscle cell proliferation  (ISO)
positive regulation of cell adhesion  (ISO)
positive regulation of cell growth  (ISO)
positive regulation of cell population proliferation  (IDA,IEA,ISO)
positive regulation of dendritic spine development  (ISO)
positive regulation of ERK1 and ERK2 cascade  (IEA,ISO,ISS)
positive regulation of gene expression  (ISO)
positive regulation of myelination  (ISO)
positive regulation of neuron projection development  (IDA)
positive regulation of peptidyl-tyrosine autophosphorylation  (ISO)
positive regulation of peptidyl-tyrosine phosphorylation  (IDA,ISO)
positive regulation of phosphatidylinositol 3-kinase signaling  (ISO)
positive regulation of protein kinase activity  (ISO)
positive regulation of protein kinase B signaling  (IEA,ISO)
positive regulation of protein localization to cell surface  (ISO)
positive regulation of protein tyrosine kinase activity  (IEA)
positive regulation of protein-containing complex assembly  (IEA,ISO)
positive regulation of Ras protein signal transduction  (ISO)
positive regulation of Schwann cell proliferation  (IMP)
positive regulation of striated muscle cell differentiation  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
postsynapse to nucleus signaling pathway  (IEA,ISO)
regulation of cell differentiation  (ISO)
regulation of postsynaptic neurotransmitter receptor internalization  (ISO)
response to progesterone  (IEP)
signal transduction  (IEA)
startle response  (ISO)
synapse assembly  (ISO)
synaptic membrane adhesion  (ISO)
transmembrane receptor protein tyrosine kinase signaling pathway  (ISO)
ventricular cardiac muscle cell differentiation  (ISO)
ventricular trabecula myocardium morphogenesis  (IEA,ISO)
wound healing  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
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Additional References at PubMed
PMID:1348215   PMID:7477375   PMID:7514177   PMID:7556068   PMID:7589796   PMID:7816098   PMID:8643489   PMID:8702723   PMID:8707830   PMID:9110980   PMID:9247262   PMID:9362461  
PMID:9553078   PMID:9685409   PMID:9789034   PMID:9852099   PMID:9892702   PMID:10559227   PMID:10597237   PMID:10686589   PMID:10707974   PMID:10762692   PMID:11116142   PMID:11389077  
PMID:11425901   PMID:11756753   PMID:12056846   PMID:12149465   PMID:12495620   PMID:12646923   PMID:12649319   PMID:12788100   PMID:12960782   PMID:14593214   PMID:14654373   PMID:14711829  
PMID:14733940   PMID:15044753   PMID:15073182   PMID:15132433   PMID:15155732   PMID:15212847   PMID:15219672   PMID:15355992   PMID:15494726   PMID:15519676   PMID:15952737   PMID:16036905  
PMID:16129398   PMID:16221846   PMID:16432850   PMID:16524373   PMID:16606832   PMID:16698793   PMID:16859650   PMID:17098736   PMID:17294200   PMID:17336907   PMID:17596863   PMID:17630047  
PMID:17998937   PMID:18080294   PMID:18410912   PMID:18458158   PMID:18465224   PMID:18596162   PMID:18633737   PMID:18819924   PMID:18830828   PMID:19179536   PMID:19781646   PMID:20220021  
PMID:20360002   PMID:20392965   PMID:20393464   PMID:20427670   PMID:20448149   PMID:20610754   PMID:20651836   PMID:20668675   PMID:20682778   PMID:21044615   PMID:21068328   PMID:21186272  
PMID:21239627   PMID:21352860   PMID:21515322   PMID:21539896   PMID:21620900   PMID:21690038   PMID:21802010   PMID:21919974   PMID:21962913   PMID:21991932   PMID:22269328   PMID:22357929  
PMID:22376909   PMID:22496574   PMID:22659027   PMID:23097328   PMID:23142316   PMID:23199222   PMID:23524246   PMID:23530877   PMID:23742124   PMID:23899995   PMID:24270810   PMID:24364879  
PMID:24391468   PMID:24406781   PMID:24518229   PMID:24529326   PMID:24530532   PMID:25177687   PMID:25266126   PMID:25337235   PMID:25453108   PMID:25820551   PMID:25978692   PMID:25988855  
PMID:26043693   PMID:26061116   PMID:26092725   PMID:26183085   PMID:26235969   PMID:26574544   PMID:26892146   PMID:27353365   PMID:27989735   PMID:27993557   PMID:28162790   PMID:28350885  
PMID:29221474   PMID:29350067   PMID:29528383   PMID:29568012   PMID:29742506   PMID:29856744   PMID:30021123   PMID:30209718   PMID:30931926   PMID:30940307   PMID:30989579   PMID:31115509  
PMID:31799641   PMID:32492853   PMID:32798561   PMID:32920546   PMID:33470533   PMID:33705930   PMID:34273906  


Genomics

Comparative Map Data
Nrg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21659,250,658 - 60,303,024 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1659,250,854 - 60,296,884 (+)Ensembl
Rnor_6.01662,969,573 - 64,065,063 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1663,837,216 - 64,057,434 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01662,632,432 - 63,718,738 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41663,937,796 - 64,126,183 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11663,937,870 - 64,126,262 (+)NCBI
Celera1657,283,140 - 58,311,856 (+)NCBICelera
Cytogenetic Map16q12.3NCBI
NRG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl831,639,222 - 32,855,666 (+)EnsemblGRCh38hg38GRCh38
GRCh38831,639,245 - 32,774,046 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37831,496,761 - 32,631,564 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36831,616,810 - 32,741,615 (+)NCBINCBI36hg18NCBI36
Build 34832,525,654 - 32,741,615NCBI
Celera830,430,833 - 31,581,276 (+)NCBI
Cytogenetic Map8p12NCBI
HuRef830,042,037 - 31,167,972 (+)NCBIHuRef
CHM1_1831,698,276 - 32,824,231 (+)NCBICHM1_1
Nrg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39832,299,493 - 33,381,858 (-)NCBIGRCm39mm39
GRCm39 Ensembl832,304,579 - 33,374,825 (-)Ensembl
GRCm39 Ensembl832,408,601 - 32,408,786 (-)Ensembl
GRCm38831,807,452 - 32,891,609 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl831,814,551 - 32,884,797 (-)EnsemblGRCm38mm10GRCm38
MGSCv37832,928,500 - 33,028,675 (-)NCBIGRCm37mm9NCBIm37
MGSCv36833,280,406 - 33,475,426 (-)NCBImm8
Celera833,340,249 - 33,441,164 (-)NCBICelera
Cytogenetic Map8A3NCBI
Nrg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554638,009,530 - 9,037,116 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554638,009,436 - 9,037,116 (+)NCBIChiLan1.0ChiLan1.0
NRG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1829,049,787 - 29,267,531 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl829,050,222 - 29,263,977 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0830,954,852 - 32,084,411 (+)NCBIMhudiblu_PPA_v0panPan3
NRG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11631,697,958 - 32,771,888 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1631,706,851 - 32,771,932 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1632,223,605 - 33,296,875 (-)NCBI
ROS_Cfam_1.01633,726,025 - 34,800,223 (-)NCBI
UMICH_Zoey_3.11631,820,963 - 32,893,204 (-)NCBI
UNSW_CanFamBas_1.01632,400,606 - 33,474,314 (-)NCBI
UU_Cfam_GSD_1.01632,439,477 - 33,584,021 (-)NCBI
Nrg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494354,835,543 - 55,046,030 (-)NCBI
SpeTri2.0NW_0049367661,104,841 - 1,306,368 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NRG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1552,627,334 - 53,688,332 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11552,625,550 - 53,688,003 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21559,915,458 - 59,983,046 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NRG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1829,745,984 - 30,862,140 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl830,635,803 - 30,856,487 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605211,219,877 - 12,342,139 (-)NCBIVero_WHO_p1.0
Nrg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478011,297,306 - 11,525,236 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D16Rat109  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21660,148,243 - 60,148,445 (+)MAPPERmRatBN7.2
Rnor_6.01663,909,163 - 63,909,364NCBIRnor6.0
Rnor_5.01663,570,510 - 63,570,711UniSTSRnor5.0
RGSC_v3.41663,977,586 - 63,977,788RGDRGSC3.4
RGSC_v3.41663,977,587 - 63,977,788UniSTSRGSC3.4
RGSC_v3.11663,977,661 - 63,977,863RGD
Celera1658,163,324 - 58,163,525UniSTS
FHH x ACI Map1635.7999RGD
FHH x ACI Map1635.7999UniSTS
Cytogenetic Map16q12.3UniSTS
D16Rat60  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21660,252,081 - 60,252,231 (+)MAPPERmRatBN7.2
Rnor_6.01664,012,637 - 64,012,784NCBIRnor6.0
Rnor_5.01663,673,941 - 63,674,088UniSTSRnor5.0
RGSC_v3.41664,081,385 - 64,081,533RGDRGSC3.4
RGSC_v3.41664,081,386 - 64,081,533UniSTSRGSC3.4
RGSC_v3.11664,081,461 - 64,081,608RGD
Celera1658,267,033 - 58,267,180UniSTS
RH 3.4 Map16566.41UniSTS
RH 3.4 Map16566.41RGD
SHRSP x BN Map1626.13UniSTS
SHRSP x BN Map1626.13RGD
Cytogenetic Map16q12.3UniSTS
D16Wox14  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01664,056,787 - 64,056,995NCBIRnor6.0
Rnor_5.01663,718,091 - 63,718,299UniSTSRnor5.0
RGSC_v3.41664,125,536 - 64,125,744UniSTSRGSC3.4
Celera1658,311,209 - 58,311,417UniSTS
Cytogenetic Map16q12.3UniSTS
D16Wox15  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21660,276,624 - 60,276,789 (+)MAPPERmRatBN7.2
Rnor_6.01664,037,178 - 64,037,342NCBIRnor6.0
Rnor_5.01663,698,482 - 63,698,646UniSTSRnor5.0
RGSC_v3.41664,105,927 - 64,106,091UniSTSRGSC3.4
Celera1658,291,600 - 58,291,764UniSTS
Cytogenetic Map16q12.3UniSTS
UniSTS:468010  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21659,251,365 - 59,251,565 (+)MAPPERmRatBN7.2
Rnor_6.01662,970,281 - 62,970,480NCBIRnor6.0
Rnor_5.01662,632,725 - 62,632,924UniSTSRnor5.0
RGSC_v3.41663,053,923 - 63,054,122UniSTSRGSC3.4
Celera1657,283,433 - 57,283,632UniSTS
Cytogenetic Map16q12.3UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat


Genetic Models
This gene Nrg1 is modified in the following models/strains
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1371
Count of miRNA genes:243
Interacting mature miRNAs:303
Transcripts:ENSRNOT00000013991, ENSRNOT00000014147, ENSRNOT00000014268, ENSRNOT00000038549, ENSRNOT00000058727
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 5
Low 3 31 35 19 18 19 1 1 69 35 37 11 1
Below cutoff 12 22 22 1 22 7 10 4 7

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001271118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF194438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF194439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF194440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF194441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF194442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF194443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF194993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF194995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF194996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF194997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY973241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY973242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY973243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY973244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY973245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY995221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY995222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY995223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ176766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M92430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U02315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U02316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U02317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U02318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U02319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U02320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U02321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U02322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U02323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U02324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000013991   ⟹   ENSRNOP00000013991
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1660,197,448 - 60,296,884 (+)Ensembl
Rnor_6.0 Ensembl1663,958,645 - 64,057,434 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000014147   ⟹   ENSRNOP00000014147
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1660,109,716 - 60,296,884 (+)Ensembl
Rnor_6.0 Ensembl1663,837,216 - 64,057,434 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000014268   ⟹   ENSRNOP00000014268
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1660,109,716 - 60,296,884 (+)Ensembl
Rnor_6.0 Ensembl1663,837,216 - 64,057,434 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000038549   ⟹   ENSRNOP00000031467
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1660,109,716 - 60,296,884 (+)Ensembl
Rnor_6.0 Ensembl1663,837,216 - 64,057,434 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000058727   ⟹   ENSRNOP00000055518
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1659,250,854 - 60,296,884 (+)Ensembl
Rnor_6.0 Ensembl1663,880,428 - 64,057,434 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000081522   ⟹   ENSRNOP00000072731
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1660,197,448 - 60,296,884 (+)Ensembl
Rnor_6.0 Ensembl1663,958,645 - 64,057,434 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082355   ⟹   ENSRNOP00000071312
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1660,197,448 - 60,296,884 (+)Ensembl
Rnor_6.0 Ensembl1663,958,645 - 64,057,434 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099919   ⟹   ENSRNOP00000077747
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1660,197,448 - 60,296,884 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100344   ⟹   ENSRNOP00000081913
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1660,197,448 - 60,295,929 (+)Ensembl
RefSeq Acc Id: NM_001271118   ⟹   NP_001258047
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21660,197,448 - 60,296,884 (+)NCBI
Rnor_6.01663,958,645 - 64,057,434 (+)NCBI
Rnor_5.01662,632,432 - 63,718,738 (+)NCBI
Celera1658,212,397 - 58,311,856 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271119   ⟹   NP_001258048
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21660,197,448 - 60,296,884 (+)NCBI
Rnor_6.01663,958,645 - 64,057,434 (+)NCBI
Rnor_5.01662,632,432 - 63,718,738 (+)NCBI
Celera1658,212,397 - 58,311,856 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271120   ⟹   NP_001258049
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21660,197,448 - 60,296,884 (+)NCBI
Rnor_6.01663,958,645 - 64,057,434 (+)NCBI
Rnor_5.01662,632,432 - 63,718,738 (+)NCBI
Celera1658,212,397 - 58,311,856 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271121   ⟹   NP_001258050
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21660,109,716 - 60,296,884 (+)NCBI
Rnor_6.01663,880,428 - 64,057,434 (+)NCBI
Rnor_5.01662,632,432 - 63,718,738 (+)NCBI
Celera1658,125,632 - 58,311,856 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271122   ⟹   NP_001258051
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21660,109,716 - 60,296,884 (+)NCBI
Rnor_6.01663,880,428 - 64,057,434 (+)NCBI
Rnor_5.01662,632,432 - 63,718,738 (+)NCBI
Celera1658,125,632 - 58,311,856 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271123   ⟹   NP_001258052
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21660,109,716 - 60,276,810 (+)NCBI
Rnor_6.01663,880,428 - 64,037,363 (+)NCBI
Rnor_5.01662,632,432 - 63,718,738 (+)NCBI
Celera1658,125,632 - 58,291,785 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271124   ⟹   NP_001258053
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21660,109,716 - 60,293,130 (+)NCBI
Rnor_6.01663,880,428 - 64,053,686 (+)NCBI
Rnor_5.01662,632,432 - 63,718,738 (+)NCBI
Celera1658,125,632 - 58,308,108 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271125   ⟹   NP_001258054
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21660,109,716 - 60,296,884 (+)NCBI
Rnor_6.01663,880,428 - 64,057,434 (+)NCBI
Rnor_5.01662,632,432 - 63,718,738 (+)NCBI
Celera1658,125,632 - 58,311,856 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271126   ⟹   NP_001258055
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21660,109,716 - 60,296,884 (+)NCBI
Rnor_6.01663,880,428 - 64,057,434 (+)NCBI
Rnor_5.01662,632,432 - 63,718,738 (+)NCBI
Celera1658,125,632 - 58,311,856 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271127   ⟹   NP_001258056
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21660,109,716 - 60,296,884 (+)NCBI
Rnor_6.01663,880,428 - 64,057,434 (+)NCBI
Rnor_5.01662,632,432 - 63,718,738 (+)NCBI
Celera1658,125,632 - 58,311,856 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271128   ⟹   NP_001258057
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21660,109,716 - 60,296,884 (+)NCBI
Rnor_6.01663,880,428 - 64,057,434 (+)NCBI
Rnor_5.01662,632,432 - 63,718,738 (+)NCBI
Celera1658,125,632 - 58,311,856 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271129   ⟹   NP_001258058
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21660,109,716 - 60,296,884 (+)NCBI
Rnor_6.01663,880,428 - 64,057,434 (+)NCBI
Rnor_5.01662,632,432 - 63,718,738 (+)NCBI
Celera1658,125,632 - 58,311,856 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271130   ⟹   NP_001258059
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21659,251,073 - 60,296,884 (+)NCBI
Rnor_6.01662,969,988 - 64,057,434 (+)NCBI
Rnor_5.01662,632,432 - 63,718,738 (+)NCBI
Celera1657,283,140 - 58,311,856 (+)NCBI
Sequence:
RefSeq Acc Id: NM_031588   ⟹   NP_113776
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21660,109,716 - 60,296,884 (+)NCBI
Rnor_6.01663,880,428 - 64,057,434 (+)NCBI
Rnor_5.01662,632,432 - 63,718,738 (+)NCBI
RGSC_v3.41663,937,796 - 64,126,183 (+)RGD
Celera1658,125,632 - 58,311,856 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599968   ⟹   XP_017455457
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21659,250,658 - 60,303,024 (+)NCBI
Rnor_6.01662,969,573 - 64,065,063 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599969   ⟹   XP_017455458
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21660,189,884 - 60,303,024 (+)NCBI
Rnor_6.01663,958,222 - 64,065,063 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599970   ⟹   XP_017455459
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21659,250,658 - 60,295,375 (+)NCBI
Rnor_6.01662,969,573 - 64,055,880 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599971   ⟹   XP_017455460
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21660,189,878 - 60,295,375 (+)NCBI
Rnor_6.01663,958,221 - 64,055,880 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094090   ⟹   XP_038950018
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21659,250,658 - 60,303,024 (+)NCBI
RefSeq Acc Id: XM_039094091   ⟹   XP_038950019
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21659,250,658 - 60,303,024 (+)NCBI
RefSeq Acc Id: XM_039094092   ⟹   XP_038950020
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21659,250,658 - 60,303,024 (+)NCBI
RefSeq Acc Id: XM_039094093   ⟹   XP_038950021
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21659,250,658 - 60,295,375 (+)NCBI
RefSeq Acc Id: XM_039094094   ⟹   XP_038950022
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21659,250,658 - 60,295,375 (+)NCBI
RefSeq Acc Id: XM_039094095   ⟹   XP_038950023
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21659,250,658 - 60,295,375 (+)NCBI
RefSeq Acc Id: XM_039094096   ⟹   XP_038950024
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21660,189,878 - 60,295,375 (+)NCBI
RefSeq Acc Id: XM_039094097   ⟹   XP_038950025
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21660,168,870 - 60,292,578 (+)NCBI
RefSeq Acc Id: XR_005494528
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21659,250,658 - 60,291,634 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001258047 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258048 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258049 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258050 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258051 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258052 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258053 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258054 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258055 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258056 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258057 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258058 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258059 (Get FASTA)   NCBI Sequence Viewer  
  NP_113776 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455457 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455458 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455459 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455460 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950018 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950019 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950020 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950021 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950022 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950023 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950024 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950025 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA19940 (Get FASTA)   NCBI Sequence Viewer  
  AAA19941 (Get FASTA)   NCBI Sequence Viewer  
  AAA19942 (Get FASTA)   NCBI Sequence Viewer  
  AAA19943 (Get FASTA)   NCBI Sequence Viewer  
  AAA19944 (Get FASTA)   NCBI Sequence Viewer  
  AAA19945 (Get FASTA)   NCBI Sequence Viewer  
  AAA19946 (Get FASTA)   NCBI Sequence Viewer  
  AAA19947 (Get FASTA)   NCBI Sequence Viewer  
  AAA19948 (Get FASTA)   NCBI Sequence Viewer  
  AAA19949 (Get FASTA)   NCBI Sequence Viewer  
  AAG28427 (Get FASTA)   NCBI Sequence Viewer  
  AAG28428 (Get FASTA)   NCBI Sequence Viewer  
  AAG28429 (Get FASTA)   NCBI Sequence Viewer  
  AAG28430 (Get FASTA)   NCBI Sequence Viewer  
  AAG28431 (Get FASTA)   NCBI Sequence Viewer  
  AAG28432 (Get FASTA)   NCBI Sequence Viewer  
  AAG28433 (Get FASTA)   NCBI Sequence Viewer  
  AAG28449 (Get FASTA)   NCBI Sequence Viewer  
  AAG28450 (Get FASTA)   NCBI Sequence Viewer  
  AAG28451 (Get FASTA)   NCBI Sequence Viewer  
  AAX98677 (Get FASTA)   NCBI Sequence Viewer  
  AAX98678 (Get FASTA)   NCBI Sequence Viewer  
  AAX98679 (Get FASTA)   NCBI Sequence Viewer  
  AAY19481 (Get FASTA)   NCBI Sequence Viewer  
  ABA03059 (Get FASTA)   NCBI Sequence Viewer  
  EDM09117 (Get FASTA)   NCBI Sequence Viewer  
  EDM09118 (Get FASTA)   NCBI Sequence Viewer  
  EDM09119 (Get FASTA)   NCBI Sequence Viewer  
  EDM09120 (Get FASTA)   NCBI Sequence Viewer  
  EDM09121 (Get FASTA)   NCBI Sequence Viewer  
  EDM09122 (Get FASTA)   NCBI Sequence Viewer  
  EDM09123 (Get FASTA)   NCBI Sequence Viewer  
  EDM09124 (Get FASTA)   NCBI Sequence Viewer  
  EDM09125 (Get FASTA)   NCBI Sequence Viewer  
  EDM09126 (Get FASTA)   NCBI Sequence Viewer  
  EDM09127 (Get FASTA)   NCBI Sequence Viewer  
  EDM09128 (Get FASTA)   NCBI Sequence Viewer  
  EDM09129 (Get FASTA)   NCBI Sequence Viewer  
  EDM09130 (Get FASTA)   NCBI Sequence Viewer  
  EDM09131 (Get FASTA)   NCBI Sequence Viewer  
  P43322 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_113776   ⟸   NM_031588
- Peptide Label: isoform 13
- UniProtKB: D4ACB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258059   ⟸   NM_001271130
- Peptide Label: isoform 14
- Sequence:
RefSeq Acc Id: NP_001258057   ⟸   NM_001271128
- Peptide Label: isoform 11
- Sequence:
RefSeq Acc Id: NP_001258058   ⟸   NM_001271129
- Peptide Label: isoform 12
- Sequence:
RefSeq Acc Id: NP_001258054   ⟸   NM_001271125
- Peptide Label: isoform 8
- Sequence:
RefSeq Acc Id: NP_001258056   ⟸   NM_001271127
- Peptide Label: isoform 10 preproprotein
- UniProtKB: G3V7F0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258055   ⟸   NM_001271126
- Peptide Label: isoform 9
- UniProtKB: G3V9Q0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258051   ⟸   NM_001271122
- Peptide Label: isoform 5
- Sequence:
RefSeq Acc Id: NP_001258050   ⟸   NM_001271121
- Peptide Label: isoform 4
- UniProtKB: D3ZC94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258053   ⟸   NM_001271124
- Peptide Label: isoform 7
- Sequence:
RefSeq Acc Id: NP_001258052   ⟸   NM_001271123
- Peptide Label: isoform 6
- UniProtKB: P43322 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001258049   ⟸   NM_001271120
- Peptide Label: isoform 3
- UniProtKB: G3V7D6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258048   ⟸   NM_001271119
- Peptide Label: isoform 2
- UniProtKB: A0A0G2K057 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258047   ⟸   NM_001271118
- Peptide Label: isoform 1
- UniProtKB: A0A0G2K3Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455457   ⟸   XM_017599968
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017455459   ⟸   XM_017599970
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017455460   ⟸   XM_017599971
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_017455458   ⟸   XM_017599969
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000071312   ⟸   ENSRNOT00000082355
RefSeq Acc Id: ENSRNOP00000031467   ⟸   ENSRNOT00000038549
RefSeq Acc Id: ENSRNOP00000014147   ⟸   ENSRNOT00000014147
RefSeq Acc Id: ENSRNOP00000014268   ⟸   ENSRNOT00000014268
RefSeq Acc Id: ENSRNOP00000072731   ⟸   ENSRNOT00000081522
RefSeq Acc Id: ENSRNOP00000055518   ⟸   ENSRNOT00000058727
RefSeq Acc Id: ENSRNOP00000013991   ⟸   ENSRNOT00000013991
RefSeq Acc Id: XP_038950018   ⟸   XM_039094090
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038950019   ⟸   XM_039094091
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038950020   ⟸   XM_039094092
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038950022   ⟸   XM_039094094
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038950021   ⟸   XM_039094093
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038950023   ⟸   XM_039094095
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038950025   ⟸   XM_039094097
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038950024   ⟸   XM_039094096
- Peptide Label: isoform X11
RefSeq Acc Id: ENSRNOP00000077747   ⟸   ENSRNOT00000099919
RefSeq Acc Id: ENSRNOP00000081913   ⟸   ENSRNOT00000100344
Protein Domains
EGF-like   Ig-like   Ig-like C2-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700145
Promoter ID:EPDNEW_R10668
Type:multiple initiation site
Name:Nrg1_1
Description:neuregulin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01663,880,382 - 63,880,442EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0