Phox2a (paired-like homeobox 2a) - Rat Genome Database

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Gene: Phox2a (paired-like homeobox 2a) Rattus norvegicus
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Symbol: Phox2a
Name: paired-like homeobox 2a
RGD ID: 621323
Description: Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of chromatin. Human ortholog(s) of this gene implicated in congenital fibrosis of the extraocular muscles 2. Orthologous to human PHOX2A (paired like homeobox 2A); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: aristaless (Drosophila) homeobox; aristaless homeobox protein homolog; Arix; ARIX1 homeodomain protein; paired mesoderm homeobox protein 2A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Is Marker For: QTLs:   Bp154   Bw55   Bw98   Bw104  
Candidate Gene For: Bp138
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,590,757 - 165,595,122 (+)NCBIGRCr8
mRatBN7.21156,178,754 - 156,183,118 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1156,178,754 - 156,183,118 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1164,169,073 - 164,173,439 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01171,349,162 - 171,353,527 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01164,226,678 - 164,231,045 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01166,893,734 - 166,898,252 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,893,734 - 166,898,252 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01173,083,448 - 173,087,966 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41159,273,524 - 159,312,136 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11159,352,540 - 159,356,748 (+)NCBI
Celera1154,257,374 - 154,261,739 (+)NCBICelera
RH 3.4 Map11272.9RGD
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Expression of Phox2 transcription factors and induction of the dopaminergic phenotype in primary sensory neurons. Brosenitsch TA and Katz DM, Mol Cell Neurosci 2002 Jul;20(3):447-57.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Homozygous mutations in ARIX(PHOX2A) result in congenital fibrosis of the extraocular muscles type 2. Nakano M, etal., Nat Genet. 2001 Nov;29(3):315-20.
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
13. A homeodomain protein selectively expressed in noradrenergic tissue regulates transcription of neurotransmitter biosynthetic genes. Zellmer E, etal., J Neurosci 1995 Dec;15(12):8109-20.
14. Age-associated changes in mRNA levels of Phox2, norepinephrine transporter and dopamine beta-hydroxylase in the locus coeruleus and adrenal glands of rats. Zhu MY, etal., J Neurochem. 2005 Aug;94(3):828-38.
Additional References at PubMed
PMID:9115735   PMID:9374403   PMID:12023301   PMID:16280598   PMID:16319924   PMID:17218061   PMID:18076286   PMID:19573018   PMID:20215354   PMID:20437524   PMID:21068058   PMID:21752929  
PMID:21763404  


Genomics

Comparative Map Data
Phox2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,590,757 - 165,595,122 (+)NCBIGRCr8
mRatBN7.21156,178,754 - 156,183,118 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1156,178,754 - 156,183,118 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1164,169,073 - 164,173,439 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01171,349,162 - 171,353,527 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01164,226,678 - 164,231,045 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01166,893,734 - 166,898,252 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,893,734 - 166,898,252 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01173,083,448 - 173,087,966 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41159,273,524 - 159,312,136 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11159,352,540 - 159,356,748 (+)NCBI
Celera1154,257,374 - 154,261,739 (+)NCBICelera
RH 3.4 Map11272.9RGD
Cytogenetic Map1q32NCBI
PHOX2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381172,239,077 - 72,244,176 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1172,239,077 - 72,245,664 (-)EnsemblGRCh38hg38GRCh38
GRCh371171,950,121 - 71,955,220 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361171,627,769 - 71,632,852 (-)NCBINCBI36Build 36hg18NCBI36
Build 341171,627,769 - 71,632,852NCBI
Celera1169,251,525 - 69,256,623 (-)NCBICelera
Cytogenetic Map11q13.4NCBI
HuRef1168,243,281 - 68,248,023 (-)NCBIHuRef
CHM1_11171,833,572 - 71,838,671 (-)NCBICHM1_1
T2T-CHM13v2.01172,165,694 - 72,170,794 (-)NCBIT2T-CHM13v2.0
Phox2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397101,467,520 - 101,471,933 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7101,467,520 - 101,471,933 (+)EnsemblGRCm39 Ensembl
GRCm387101,818,313 - 101,822,726 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7101,818,313 - 101,822,726 (+)EnsemblGRCm38mm10GRCm38
MGSCv377108,966,827 - 108,971,240 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367101,692,311 - 101,696,547 (+)NCBIMGSCv36mm8
Celera7102,190,059 - 102,194,443 (+)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.66NCBI
Phox2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541419,141,589 - 19,145,486 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541419,141,589 - 19,145,486 (+)NCBIChiLan1.0ChiLan1.0
PHOX2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2973,186,167 - 73,191,264 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11174,229,581 - 74,234,688 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01167,317,747 - 67,322,850 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11170,542,242 - 70,546,305 (-)NCBIpanpan1.1PanPan1.1panPan2
PHOX2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12125,895,628 - 25,900,338 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2125,892,321 - 25,900,351 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2125,665,337 - 25,670,038 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02126,104,275 - 26,108,976 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2126,104,334 - 26,108,323 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12125,895,746 - 25,900,444 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02126,111,941 - 26,116,643 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02126,013,496 - 26,018,198 (+)NCBIUU_Cfam_GSD_1.0
Phox2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494759,940,335 - 59,944,949 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364981,540,484 - 1,544,360 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364981,539,939 - 1,544,469 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHOX2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl96,807,623 - 6,812,578 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.196,808,144 - 6,831,636 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.297,570,140 - 7,586,515 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHOX2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1163,459,031 - 63,464,674 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl163,459,719 - 63,463,894 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604362,420,425 - 62,425,613 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phox2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248174,775,258 - 4,779,303 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248174,775,176 - 4,779,694 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Phox2a
15 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:80
Count of miRNA genes:68
Interacting mature miRNAs:69
Transcripts:ENSRNOT00000026702
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
2313060Bss71Bone structure and strength QTL 712.60.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)1118944747163944747Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118944897199050459Rat
1598850Bp297Blood pressure QTL 2972.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
2293140Bp313Blood pressure QTL 313arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121833674166833674Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350408181759564Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1123350408182418476Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1123350408182418476Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350581201284552Rat
634348Bp138Blood pressure QTL 138arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501168883176Rat
9685799Bp375Blood pressure QTL 375arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
631654Bp107Blood pressure QTL 107arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
9685802Bp376Blood pressure QTL 376arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1126540680171540680Rat
738006Anxrr14Anxiety related response QTL 1440.00035locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
738028Anxrr12Anxiety related response QTL 124.90.00001locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
631202Gluco13Glucose level QTL 130.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1131763437159756369Rat
6893347Bw98Body weight QTL 980.20.53body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
6893361Bw104Body weight QTL 1040.590.27body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
1558645Bw55Body weight QTL 553.20.004body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
631206Niddm40Non-insulin dependent diabetes mellitus QTL 40blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1136745990163747690Rat
71118Thym1Thymus enlargement QTL 110.170.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
724550Thym3Thymus enlargement QTL 37.820.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1136830018181830018Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1143506580212458660Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144017057197814409Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1144267353222987745Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
634315Niddm45Non-insulin dependent diabetes mellitus QTL 457.16blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1144267916172949660Rat
61379Bp44Blood pressure QTL 4419.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144267916174133260Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1149448574221264292Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1151162512201278233Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512201278233Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1151162512201278233Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1151162512201278233Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1151646613196646613Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
2303622Vencon6Ventilatory control QTL 60.001respiration trait (VT:0001943)respiration rate (CMO:0000289)1154561505199561505Rat
1582204Livw1Liver weight QTL 13.60.0003liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)1155422851172949803Rat
4889419Cstrr2Cold stress response QTL 20.05urine catecholamine amount (VT:0010502)absolute change in urine norepinephrine level (CMO:0001634)1155866514158592016Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1155866514200866514Rat

Markers in Region
X75014  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21156,182,774 - 156,182,957 (+)MAPPERmRatBN7.2
Rnor_6.01166,897,909 - 166,898,091NCBIRnor6.0
Rnor_5.01173,087,623 - 173,087,805UniSTSRnor5.0
RGSC_v3.41159,277,548 - 159,277,730UniSTSRGSC3.4
Celera1154,261,396 - 154,261,578UniSTS
Cytogenetic Map1q32UniSTS
RH137019  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21156,200,106 - 156,200,303 (+)MAPPERmRatBN7.2
Rnor_6.01166,915,108 - 166,915,304NCBIRnor6.0
Rnor_5.01173,104,893 - 173,105,089UniSTSRnor5.0
RGSC_v3.41159,295,836 - 159,296,032UniSTSRGSC3.4
Celera1154,279,528 - 154,279,724UniSTS
RH 3.4 Map11273.7UniSTS
Cytogenetic Map1q32UniSTS
RH128243  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21156,182,790 - 156,182,986 (+)MAPPERmRatBN7.2
Rnor_6.01166,897,925 - 166,898,120NCBIRnor6.0
Rnor_5.01173,087,639 - 173,087,834UniSTSRnor5.0
Celera1154,261,412 - 154,261,607UniSTS
RH 3.4 Map11272.9UniSTS
Cytogenetic Map1q32UniSTS
RH142431  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21156,182,775 - 156,182,987 (+)MAPPERmRatBN7.2
Rnor_6.01166,897,910 - 166,898,121NCBIRnor6.0
Rnor_5.01173,087,624 - 173,087,835UniSTSRnor5.0
Celera1154,261,397 - 154,261,608UniSTS
RH 3.4 Map11272.9UniSTS
Cytogenetic Map1q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 3 16 10 11 7 9 33 13 33 11 7
Below cutoff 11 19 13 8 13 1 2 17 10 7 1

Sequence


RefSeq Acc Id: ENSRNOT00000026702   ⟹   ENSRNOP00000026702
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1156,178,754 - 156,183,118 (+)Ensembl
Rnor_6.0 Ensembl1166,893,734 - 166,898,252 (+)Ensembl
RefSeq Acc Id: NM_053869   ⟹   NP_446321
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81165,590,757 - 165,595,122 (+)NCBI
mRatBN7.21156,178,754 - 156,183,118 (+)NCBI
Rnor_6.01166,893,734 - 166,898,252 (+)NCBI
Rnor_5.01173,083,448 - 173,087,966 (+)NCBI
RGSC_v3.41159,273,524 - 159,312,136 (+)RGD
Celera1154,257,374 - 154,261,739 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_446321 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB04168 (Get FASTA)   NCBI Sequence Viewer  
  BAD54702 (Get FASTA)   NCBI Sequence Viewer  
  EDM18273 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000026702
  ENSRNOP00000026702.7
GenBank Protein Q62782 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_446321   ⟸   NM_053869
- UniProtKB: G3V8L2 (UniProtKB/TrEMBL),   A6I6V7 (UniProtKB/TrEMBL),   Q60FX4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000026702   ⟸   ENSRNOT00000026702
Protein Domains
Homeobox

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62782-F1-model_v2 AlphaFold Q62782 1-281 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621323 AgrOrtholog
BioCyc Gene G2FUF-58277 BioCyc
Ensembl Genes ENSRNOG00000019706 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026702 ENTREZGENE
  ENSRNOT00000026702.7 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:116648 UniProtKB/Swiss-Prot
NCBI Gene 116648 ENTREZGENE
PANTHER HOMEOBOX PROTEIN ARISTALESS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAIRED MESODERM HOMEOBOX PROTEIN 2A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Phox2a PhenoGen
PROSITE HOMEOBOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019706 RatGTEx
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6I6V7 ENTREZGENE, UniProtKB/TrEMBL
  G3V8L2 ENTREZGENE, UniProtKB/TrEMBL
  PHX2A_RAT UniProtKB/Swiss-Prot
  Q60FX4 ENTREZGENE, UniProtKB/TrEMBL
  Q62782 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Phox2a  paired-like homeobox 2a  Arix  aristaless (Drosophila) homeobox  Symbol and Name updated 1299863 APPROVED
2002-08-07 Arix  aristaless (Drosophila) homeobox      Symbol and Name status set to provisional 70820 PROVISIONAL