Cd151 (CD151 molecule (Raph blood group))

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Gene: Cd151 (CD151 molecule (Raph blood group)) Rattus norvegicus

Analyze

Symbol:

Cd151

Name:

CD151 molecule (Raph blood group)

RGD ID:

621290

Description:

Enables integrin binding activity. Predicted to act upstream of or within several processes, including T cell proliferation; positive regulation of endocytosis; and wound healing, spreading of cells. Predicted to be located in basement membrane and cell surface. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in epidermolysis bullosa simplex. Orthologous to human CD151 (CD151 molecule (Raph blood group)); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; aldehydo-D-glucose.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CD151 antigen; CD151 antigen (Raph blood group); CD151 antigen-like; LOC100911730; PETA-3; platelet endothelial tetraspan antigen-3; platelet-endothelial tetraspan antigen 3

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CD151 (CD151 molecule (Raph blood group))	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cd151 (CD151 antigen)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cd151 (CD151 molecule (Raph blood group))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CD151 (CD151 molecule (Raph blood group))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CD151 (CD151 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cd151 (CD151 molecule (Raph blood group))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CD151 (CD151 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CD151 (CD151 molecule (Raph blood group))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TSPAN11 (tetraspanin 11)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	CD151 (CD151 molecule (Raph blood group))	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cd151 (CD151 antigen)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cd151 (CD151 molecule)	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	cd151l (CD151 antigen, like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tsp-20	Alliance	DIOPT (Hieranoid\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	196,564,744 - 196,568,753 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	196,565,181 - 196,568,753 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	204,910,092 - 204,914,112 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	1	212,038,605 - 212,042,612 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	1	204,712,755 - 204,716,762 (+)	NCBI	Rnor_WKY
Rnor_6.0	1	214,446,659 - 214,450,668 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	214,446,659 - 214,450,666 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	1	214,009,784 - 214,013,765 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	220,926,982 - 220,930,995 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	201,653,960 - 201,657,967 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	201,807,314 - 201,811,322 (+)	NCBI
Celera	1	194,198,240 - 194,202,247 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

delta beta-thalassemia (ISO)

developmental and epileptic encephalopathy (ISO)

early infantile epileptic encephalopathy (ISO)

Epidermolysis Bullosa Simplex 7, with Nephropathy and Deafness (ISO)

genetic disease (ISO)

immunodeficiency 39 (ISO)

neuronal ceroid lipofuscinosis (ISO)

Segawa Syndrome, Autosomal Recessive (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

acetylsalicylic acid (ISO)

aflatoxin B1 (ISO)

aldehydo-D-glucose (EXP)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

cannabidiol (ISO)

carbamazepine (EXP)

carbon nanotube (ISO)

carmustine (ISO)

chlormequat chloride (EXP)

chrysene (ISO)

cisplatin (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

cyclophosphamide (ISO)

cyclosporin A (ISO)

D-glucose (EXP)

dexamethasone (ISO)

diazinon (ISO)

dibenz[a,h]anthracene (ISO)

dibutyl phthalate (EXP,ISO)

diethylstilbestrol (ISO)

dioxygen (EXP)

fenamidone (ISO)

fipronil (EXP)

flavonoids (EXP)

flutamide (EXP)

folic acid (ISO)

fulvestrant (ISO)

glucose (EXP)

hydroquinone O-beta-D-glucopyranoside (ISO)

ivermectin (ISO)

lithium atom (EXP)

lithium hydride (EXP)

methamphetamine (EXP)

methotrexate (ISO)

N-nitrosodiethylamine (EXP)

nickel subsulfide (EXP)

nicotine (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

parathion (ISO)

phenethyl caffeate (EXP)

quercetin (ISO)

simvastatin (EXP)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

testosterone (ISO)

testosterone enanthate (ISO)

tetrachloromethane (EXP,ISO)

tetraphene (ISO)

topotecan (EXP)

trichloroethene (EXP)

tungsten (ISO)

valproic acid (EXP,ISO)

vancomycin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell migration (ISO)

positive regulation of cell migration (ISO)

positive regulation of endocytosis (ISO)

T cell proliferation (ISO)

wound healing, spreading of cells (ISO)

Cellular Component

basement membrane (ISO)

cell surface (ISO)

membrane (IEA)

Molecular Function

integrin binding (IPI,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Tetraspan protein CD151: a common target of mood stabilizing drugs?	Hua LV, etal., Neuropsychopharmacology 2001 Nov;25(5):729-36.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Cell surface tetraspanin Tspan8 contributes to molecular pathways of exosome-induced endothelial cell activation.	Nazarenko I, etal., Cancer Res. 2010 Feb 15;70(4):1668-78. doi: 10.1158/0008-5472.CAN-09-2470. Epub 2010 Feb 2.
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
8.	GOA pipeline	RGD automated data pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	The tetraspanin CD151 functions as a negative regulator in the adhesion-dependent activation of Ras.	Sawada S, etal., J Biol Chem 2003 Jul 18;278(29):26323-6. Epub 2003 Jun 2.
12.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15199151	PMID:15489334	PMID:17716972	PMID:21423176	PMID:23302890	PMID:23683890	PMID:24220332	PMID:25544774	PMID:27993971	PMID:31186138	PMID:32285246	PMID:34022890

Genomics

Comparative Map Data

Cd151
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	196,564,744 - 196,568,753 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	196,565,181 - 196,568,753 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	204,910,092 - 204,914,112 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	1	212,038,605 - 212,042,612 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	1	204,712,755 - 204,716,762 (+)	NCBI	Rnor_WKY
Rnor_6.0	1	214,446,659 - 214,450,668 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	214,446,659 - 214,450,666 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	1	214,009,784 - 214,013,765 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	220,926,982 - 220,930,995 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	201,653,960 - 201,657,967 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	201,807,314 - 201,811,322 (+)	NCBI
Celera	1	194,198,240 - 194,202,247 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI

CD151
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	832,952 - 838,831 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	11	832,887 - 839,831 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	832,952 - 838,831 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	822,952 - 828,835 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	822,985 - 828,834	NCBI
Celera	11	899,583 - 905,516 (+)	NCBI		Celera
Cytogenetic Map	11	p15.5	NCBI
HuRef	11	648,214 - 654,180 (+)	NCBI		HuRef
CHM1_1	11	831,908 - 837,876 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	884,376 - 890,206 (+)	NCBI		T2T-CHM13v2.0

Cd151
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	141,047,275 - 141,051,394 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	141,047,305 - 141,051,386 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	141,467,362 - 141,471,481 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	141,467,392 - 141,471,473 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	148,653,261 - 148,657,380 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	141,318,713 - 141,322,793 (+)	NCBI		MGSCv36	mm8
Celera	7	141,261,153 - 141,265,272 (+)	NCBI		Celera
Cytogenetic Map	7	F5	NCBI
cM Map	7	86.82	NCBI

Cd151
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955476	11,294,359 - 11,337,825 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955476	11,294,359 - 11,298,990 (-)	NCBI	ChiLan1.0	ChiLan1.0

CD151
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	11	895,802 - 900,289 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	895,802 - 900,289 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	11	851,726 - 857,651 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

CD151
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	45,195,875 - 45,200,066 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	45,196,237 - 45,200,081 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	43,862,244 - 43,867,003 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	45,860,205 - 45,864,968 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	45,860,164 - 45,864,953 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	45,324,956 - 45,329,719 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	44,889,787 - 44,894,548 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	45,627,918 - 45,632,683 (+)	NCBI		UU_Cfam_GSD_1.0

Cd151
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	592,813 - 597,115 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936888	592,849 - 597,107 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936888	592,325 - 597,116 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CD151
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	525,051 - 529,565 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	525,000 - 529,568 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	144,770 - 149,324 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CD151
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	639,044 - 645,154 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	639,345 - 647,157 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	97,729,178 - 97,734,979 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Cd151
13 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	151
Count of miRNA genes:	101
Interacting mature miRNAs:	121
Transcripts:	ENSRNOT00000072434
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	94494440	198211706	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	94494440	198324465	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94642722	214537671	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	102813953	201278233	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	102813953	201278233	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	102813953	218753816	Rat
7794788	Mcs32	Mammary carcinoma susceptibility QTL 32	2.61		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	1	115540693	238914717	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118608292	241799120	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118944897	199050459	Rat
631549	Bp89	Blood pressure QTL 89	5.7		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350581	201284552	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	143506580	212458660	Rat
61348	Bp30	Blood pressure QTL 30	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	144017057	197814409	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	144267353	222987745	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	144267353	251128347	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	149448574	221264292	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	150700142	252085212	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	150700247	252085048	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	150700247	252085048	Rat
1354602	Bw35	Body weight QTL 35	12.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	201278233	Rat
1354620	Kidm19	Kidney mass QTL 19	4		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	201278233	Rat
1354634	Kidm12	Kidney mass QTL 12	3.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	1	151162512	201278233	Rat
1354636	Lmblg1	Limb length QTL 1	6.4		tibia length (VT:0004357)	tibia length (CMO:0000450)	1	151162512	201278233	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	256448636	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	151162766	225824951	Rat
61343	Bp28	Blood pressure QTL 28			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	151646613	196646613	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	153136852	260522016	Rat
2303622	Vencon6	Ventilatory control QTL 6		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	1	154561505	199561505	Rat
4889428	Stresp24	Stress response QTL 24		0.05	heart pumping trait (VT:2000009)	absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)	1	155866514	200866514	Rat
1354618	Kidm15	Kidney mass QTL 15	5		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	1	156677124	201278233	Rat
2312420	Pur17	Proteinuria QTL 17	7.1	0.0001	urine protein amount (VT:0005160)	urine total protein excretion rate (CMO:0000756)	1	156677124	218753816	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	156677124	256448636	Rat
61347	Bp197	Blood pressure QTL 197	4.2		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	1	158633083	203633083	Rat
2292222	Bp307	Blood pressure QTL 307	3.06	0.0014	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164310393	213533942	Rat
2292220	Bp306	Blood pressure QTL 306	3.47	0.00087	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164310393	243914901	Rat
619613	Bp77	Blood pressure QTL 77		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164747424	209747424	Rat
619613	Bp77	Blood pressure QTL 77		0.01	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	164747424	209747424	Rat
1354653	Despr9	Despair related QTL 9		0.00019	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	167909849	212909849	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	169112897	197261052	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	169112897	197261052	Rat
61341	Bp26	Blood pressure QTL 26			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	169537671	214537671	Rat
724562	Rends1	Renal damage susceptibility QTL 1		0.05	kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	1	169537671	214537671	Rat
1358294	Bw37	Body weight QTL 37	5	0.000011	body mass (VT:0001259)	body weight (CMO:0000012)	1	171310381	216310381	Rat
2293689	Bss47	Bone structure and strength QTL 47	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	1	171629477	216629477	Rat
2293693	Bss22	Bone structure and strength QTL 22	33.52	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	1	171629477	216629477	Rat
2300161	Bmd43	Bone mineral density QTL 43	8.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	171629477	216629477	Rat
2300174	Bmd42	Bone mineral density QTL 42	8.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	bone mineral density (CMO:0001226)	1	171629477	216629477	Rat
2300187	Bmd41	Bone mineral density QTL 41	8.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	171629477	216629477	Rat
2293654	Bss30	Bone structure and strength QTL 30	32.65	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	1	171629477	216629477	Rat
2293673	Bss27	Bone structure and strength QTL 27	18.63	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	1	171629477	216629477	Rat
2293677	Bss41	Bone structure and strength QTL 41	9.38	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	1	171629477	216629477	Rat
1549830	Bss1	Bone structure and strength QTL 1	4.8		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	172609619	217609619	Rat
631214	Bw61	Body weight QTL61	3.4	0.0001	intramuscular adipose amount (VT:0010044)	intramuscular fat area (CMO:0001162)	1	173108781	218108781	Rat
70163	Bw20	Body weight QTL 20	5.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	174133260	219133260	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	176426412	257976495	Rat
1600380	Niddm70	Non-insulin dependent diabetes mellitus QTL 70	3.1	0.0008	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	176550523	221550523	Rat
10059600	Bp378	Blood pressure QTL 378	3.08	0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	176869060	221869060	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	177227632	256448636	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	177227632	256448636	Rat
1558658	Bw59	Body weight QTL 59	3.5	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	1	178784622	223784622	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	178810256	240830002	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	179567751	260522016	Rat
1302787	Stl25	Serum triglyceride level QTL 25	2.7	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	180359209	210702199	Rat
6903303	Scl34	Serum cholesterol QTL 34	2.5	0.0033	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	180359209	218108781	Rat
737977	Bp160	Blood pressure QTL 160		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	181133855	226133855	Rat
724559	Pancm1	Pancreatic morphology QTL 1	7.1		islet of Langerhans morphology trait (VT:0005215)	pancreatic islet damage composite score (CMO:0001156)	1	181759564	214537555	Rat
2293083	Iddm25	Insulin dependent diabetes mellitus QTL 25	4.18		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	181829673	224569684	Rat
634312	Bp143	Blood pressure QTL 143	3	0.0002	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	182623426	219932796	Rat
8655655	Arrd2	Age-related retinal degeneration QTL 2	7.79		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	183970203	243914901	Rat
8655855	Arrd3	Age-related retinal degeneration QTL 3	3.07		lens clarity trait (VT:0001304)	cataract incidence/prevalence measurement (CMO:0001585)	1	183970203	243914901	Rat
631838	Niddm36	Non-insulin dependent diabetes mellitus QTL 36		0.01	insulin secretion trait (VT:0003564)	calculated pancreatic islet insulin release measurement (CMO:0001217)	1	184550676	229550676	Rat
1300145	Rf7	Renal function QTL 7	2.96		urine creatinine amount (VT:0010540)	urine creatinine level (CMO:0000125)	1	185145134	221264292	Rat
1359018	Hrtrt20	Heart rate QTL 20	3.08		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	185356336	202902618	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	185356336	231689108	Rat
1582206	Kidm33	Kidney mass QTL 33	6.9		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	188377360	224054420	Rat
6480780	Insul18	Insulin level QTL 18	4.11		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	189607473	200611765	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	191019702	246062233	Rat
10059590	Kidm44	Kidney mass QTL 44	3.42	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	191033875	236033875	Rat
631260	Tcas2	Tongue tumor susceptibility QTL 2	4.93		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	1	192485903	199050587	Rat
1358191	Ept10	Estrogen-induced pituitary tumorigenesis QTL 10	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	192825253	243914732	Rat
8552891	Epfw5	Epididymal fat weight QTL 5	4.4		epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	1	193113876	238113876	Rat
634338	Hcar4	Hepatocarcinoma resistance QTL 4	4.6		liver integrity trait (VT:0010547)	liver tumorous lesion number to liver area ratio (CMO:0001210)	1	193422268	214537671	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	195804352	257091168	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	195804352	257091168	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	195804352	257091168	Rat
631658	Cm7	Cardiac mass QTL 7	5.32	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	1	196248093	241248093	Rat
1358292	Cm37	Cardiac mass QTL 37	6.2	0.00000081	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	1	196248093	241248093	Rat

Markers in Region

Cd151

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	196,566,618 - 196,566,827 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	214,448,534 - 214,448,742	NCBI	Rnor6.0
Rnor_6.0	1	214,011,628 - 214,011,836	NCBI	Rnor6.0
Rnor_5.0	1	220,928,857 - 220,929,065	UniSTS	Rnor5.0
Rnor_5.0	1	221,365,646 - 221,365,854	UniSTS	Rnor5.0
RGSC_v3.4	1	201,655,835 - 201,656,043	UniSTS	RGSC3.4
Celera	1	194,200,115 - 194,200,323	UniSTS
Cytogenetic Map	1	q41	UniSTS

D1Bda71

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	196,568,347 - 196,568,714 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	214,450,263 - 214,450,629	NCBI	Rnor6.0
Rnor_6.0	1	214,013,357 - 214,013,723	NCBI	Rnor6.0
Rnor_5.0	1	220,930,586 - 220,930,952	UniSTS	Rnor5.0
Rnor_5.0	1	221,367,375 - 221,367,741	UniSTS	Rnor5.0
RGSC_v3.4	1	201,657,564 - 201,657,930	UniSTS	RGSC3.4
Celera	1	194,201,844 - 194,202,210	UniSTS
Cytogenetic Map	1	q41	UniSTS

RH137382

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	196,563,754 - 196,563,950 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	214,445,670 - 214,445,865	NCBI	Rnor6.0
Rnor_6.0	1	214,008,764 - 214,008,959	NCBI	Rnor6.0
Rnor_5.0	1	221,362,782 - 221,362,977	UniSTS	Rnor5.0
Rnor_5.0	1	220,925,993 - 220,926,188	UniSTS	Rnor5.0
RGSC_v3.4	1	201,652,971 - 201,653,166	UniSTS	RGSC3.4
Celera	1	194,197,251 - 194,197,446	UniSTS
RH 3.4 Map	1	1436.8	UniSTS
Cytogenetic Map	1	q41	UniSTS

BM391933

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	196,568,532 - 196,568,700 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	214,450,448 - 214,450,615	NCBI	Rnor6.0
Rnor_6.0	1	214,013,542 - 214,013,709	NCBI	Rnor6.0
Rnor_5.0	1	221,367,560 - 221,367,727	UniSTS	Rnor5.0
Rnor_5.0	1	220,930,771 - 220,930,938	UniSTS	Rnor5.0
RGSC_v3.4	1	201,657,749 - 201,657,916	UniSTS	RGSC3.4
Celera	1	194,202,029 - 194,202,196	UniSTS
RH 3.4 Map	1	1438.4	UniSTS
Cytogenetic Map	1	q41	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_022523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC109542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF192547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC072515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000026079 ⟹ ENSRNOP00000026080

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	214,009,784 - 214,013,761 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000072434 ⟹ ENSRNOP00000066223

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	214,446,659 - 214,450,666 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000089241 ⟹ ENSRNOP00000073673

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	196,565,181 - 196,568,695 (+)	Ensembl
Rnor_6.0 Ensembl	1	214,009,986 - 214,013,765 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000107678 ⟹ ENSRNOP00000096244

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	196,565,211 - 196,568,753 (+)	Ensembl

RefSeq Acc Id:

NM_022523 ⟹ NP_071968

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	196,564,744 - 196,568,751 (+)	NCBI
Rnor_6.0	1	214,446,659 - 214,450,666 (+)	NCBI
Rnor_5.0	1	220,926,982 - 220,930,995 (+)	NCBI
RGSC_v3.4	1	201,653,960 - 201,657,967 (+)	RGD
Celera	1	194,198,240 - 194,202,247 (+)	RGD

Sequence:

show sequence

GCGCTCCTACAGTGGCTGCCGGGGCTGGTATTTCAAAGCGTGGTTGATCTGGTGGCTCTGAGAA
TCATTCTGATTACTGCTTCAGACACCATAGGAGTGGCAAGATCCCACCTGCCAGGTGAAGGGCG
GGCAGATCAGTGACTTTGACCTGTACCTGCTGGTCCTGACTTCCAGAGGCCCAGGATGGGGGAA
TTCAACGAGAAGAAGGCAACATGTGGCACAGTCTGCCTCAAGTATCTGCTGTTCACCTACAACT
GCTGCTTCTGGCTGGCTGGCCTGGCCGTCATGGCAGTGGGCATTTGGACACTGGCCCTCAAGAG
TGACTACATTAGTCTGCTGGCTTCAAGCACCTACCTAGCAACAGCCTACATCTTAGTGGTGGCT
GGTGTTGTTGTCATGGTGACTGGAGTCCTGGGCTGCTGTGCCACTTTCAAGGAGCGACGGAACC
TGTTACGCTTGTACTTCATCCTGCTCCTCATCATCTTCCTTCTGGAGATCATTGCTGGCATCCT
GGCCTATGTCTACTATCAGCAGCTCAACACCGAGCTCAAGGAGAATCTGAAGGACACCATGATC
AAGAGATACCACCAGTCAGGCCATGAGGGTGTGACCAACGCTGTAGACAAGCTGCAGCAAGAGT
TCCACTGCTGTGGCAGCAACAACTCTCGAGACTGGAGAGACAGCGAGTGGATCCGCTCTGGTGA
GGCAGACAGCCGTGTGGTCCCTGACAGCTGCTGTAAGACTGTGGTAACTGGCTGTGGTAAGCGG
GAGCACGCCTCCAACATCTATAAAGTGGAAGGTGGCTGCATCACTAAGCTGGAGTCCTTCATTC
AGGAGCACCTGCGGGTCATCGGGGCCGTGGGCATTGGCATCGCCTGTGTGCAGGTCTTCGGCAT
GATCTTCACCTGCTGCTTGTACAGAAGCCTCAAGCTGGAGCACTACTGACCATGGTGCCAGGCC
AGAAGGCCAGCCTCGCGCTGTGTCCCAGCCCCCCACTACTGAACACTACTGAGTTAGACTGCTG
ACTGCCAGAGAGGTAGCTGCCCTCATGCCATTACCATGTCCCCTGGTGGCTCCACCTCCGTGGT
AGCTTCAAGTGCCTTTCCCTGCACACCAAAGTCCCAAAGCTTGAGGCAGCGTACTTGCCCCAGC
ATTAACAAGAGGGGGCATGTATGCCAGTGTTGGGCTAGGCCTGGCTAGTAGAGTAGGGTTTAGA
TTACTTGACAGAAGTGCCTCTTATGTAGACTGCTTCCCTTTGGGTAGCTGTGATCTGCAGTAAG
TCTGGGGAGAATCCGAGCATACCACTACACGGTGGGTAAGAGCAGGTGGGAAGGGGCCTTTCTG
GTTGGGCTAGGCACCTTTCATGCCTGCTGCCAGGAACCCTCAGATAGGGCAAGCTTAGGGGAAC
TGGAATCCCACACTGTATGCTGTCCTTTCCACACAGGCCTCTTGCTCCTAACGGCCTCAGCCCT
GGGCTTTTCCTACTACTGATAACACTATGTAAATGTTCCATGTTCCTGTACACTGTCTCTTTTG
GGAACATCTCTGAATGGAGCATGGCTGTTTTCATTCACTGCTGTATCCCAGATGCCCACAGATG
CTCCTGCTGTGTGACAGGTGCTCAATAAATGTATAAGCAGTCAAAAAAAAAAAAAAAAAAAAAA
AAAA

hide sequence

RefSeq Acc Id:

XM_006230576 ⟹ XP_006230638

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	196,565,178 - 196,568,753 (+)	NCBI
Rnor_6.0	1	214,447,124 - 214,450,668 (+)	NCBI
Rnor_5.0	1	220,926,982 - 220,930,995 (+)	NCBI

Sequence:

show sequence

CCGTCGGTGGGGCGGGTGCCCGGTGCCATGGAGGGCTCAGGGGAGGTACTGGAGCTGAGTGTAG
GGAGGTAGTGTCCTGGCCGCAGGAGCTATTTCTGGCTGGTCCCGGCTCCCACGCGGACACTTTC
TCAGGGAATTTACATTCAGTCTGCTGATTGTGCCTTGGCTTAGGTTGCTGGATCTGGTGGCTCT
GAGAATCATTCTGATTACTGCTTCAGACACCATAGGAGTGGCAAGATCCCACCTGCCAGGTGAA
GGGCGGGCAGATCAGTGACTTTGACCTGTACCTGCTGGTCCTGACTTCCAGAGGCCCAGGATGG
GGGAATTCAACGAGAAGAAGGCAACATGTGGCACAGTCTGCCTCAAGTATCTGCTGTTCACCTA
CAACTGCTGCTTCTGGCTGGCTGGCCTGGCCGTCATGGCAGTGGGCATTTGGACACTGGCCCTC
AAGAGTGACTACATTAGTCTGCTGGCTTCAAGCACCTACCTAGCAACAGCCTACATCTTAGTGG
TGGCTGGTGTTGTTGTCATGGTGACTGGAGTCCTGGGCTGCTGTGCCACTTTCAAGGAGCGACG
GAACCTGTTACGCTTGTACTTCATCCTGCTCCTCATCATCTTCCTTCTGGAGATCATTGCTGGC
ATCCTGGCCTATGTCTACTATCAGCAGCTCAACACCGAGCTCAAGGAGAATCTGAAGGACACCA
TGATCAAGAGATACCACCAGTCAGGCCATGAGGGTGTGACCAACGCTGTAGACAAGCTGCAGCA
AGAGTTCCACTGCTGTGGCAGCAACAACTCTCGAGACTGGAGAGACAGCGAGTGGATCCGCTCT
GGTGAGGCAGACAGCCGTGTGGTCCCTGACAGCTGCTGTAAGACTGTGGTAACTGGCTGTGGTA
AGCGGGAGCACGCCTCCAACATCTATAAAGTGGAAGGTGGCTGCATCACTAAGCTGGAGTCCTT
CATTCAGGAGCACCTGCGGGTCATCGGGGCCGTGGGCATTGGCATCGCCTGTGTGCAGGTCTTC
GGCATGATCTTCACCTGCTGCTTGTACAGAAGCCTCAAGCTGGAGCACTACTGACCATGGTGCC
AGGCCAGAAGGCCAGCCTCGCGCTGTGTCCCAGCCCCCCACTACTGAACACTACTGAGTTAGAC
TGCTGACTGCCAGAGAGGTAGCTGCCCTCATGCCATTACCATGTCCCCTGGTGGCTCCACCTCC
GTGGTAGCTTCAAGTGCCTTTCCCTGCACACCAAAGTCCCAAAGCTTGAGGCAGCGTACTTGCC
CCAGCATTAACAAGAGGGGGCATGTATGCCAGTGTTGGGCTAGGCCTGGCTAGTAGAGTAGGGT
TTAGATTACTTGACAGAAGTGCCTCTTATGTAGACTGCTTCCCTTTGGGTAGCTGTGATCTGCA
GTAAGTCTGGGGAGAATCCGAGCATACCACTACACGGTGGGTAAGAGCAGGTGGGAAGGGGCCT
TTCTGGTTGGGCTAGGCACCTTTCATGCCTGCTGCCAGGAACCCTCAGATAGGGCAAGCTTAGG
GGAACTGGAATCCCACACTGTATGCTGTCCTTTCCACACAGGCCTCTTGCTCCTAACGGCCTCA
GCCCTGGGCTTTTCCTACTACTGATAACACTATGTAAATGTTCAACGTTCCTGTACACTGTCTC
TTTTGGGAACATCTCTGAATGGAGCATGGCTGTTTTCATTCACTGCTGTATCCCAGATGCCCAC
AGATGCTCCTGCTGTGTGACAGGTGCTCAATAAATGTATAAGCAGTCGA

hide sequence

RefSeq Acc Id:

XM_017589658 ⟹ XP_017445147

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	196,565,129 - 196,568,753 (+)	NCBI
Rnor_6.0	1	214,447,071 - 214,450,668 (+)	NCBI

Sequence:

show sequence

CTTCATCTCTGTGACGCGGGGATTCCTCGCCCAGCCGACTTCAGTATTTCATCCCGTCGGTGGG
GCGGGTGCCCGGTGCCATGGAGGGCTCAGGGGAGATCTGGTGGCTCTGAGAATCATTCTGATTA
CTGCTTCAGACACCATAGGAGTGGCAAGATCCCACCTGCCAGGTGAAGGGCGGGCAGATCAGTG
ACTTTGACCTGTACCTGCTGGTCCTGACTTCCAGAGGCCCAGGATGGGGGAATTCAACGAGAAG
AAGGCAACATGTGGCACAGTCTGCCTCAAGTATCTGCTGTTCACCTACAACTGCTGCTTCTGGC
TGGCTGGCCTGGCCGTCATGGCAGTGGGCATTTGGACACTGGCCCTCAAGAGTGACTACATTAG
TCTGCTGGCTTCAAGCACCTACCTAGCAACAGCCTACATCTTAGTGGTGGCTGGTGTTGTTGTC
ATGGTGACTGGAGTCCTGGGCTGCTGTGCCACTTTCAAGGAGCGACGGAACCTGTTACGCTTGT
ACTTCATCCTGCTCCTCATCATCTTCCTTCTGGAGATCATTGCTGGCATCCTGGCCTATGTCTA
CTATCAGCAGCTCAACACCGAGCTCAAGGAGAATCTGAAGGACACCATGATCAAGAGATACCAC
CAGTCAGGCCATGAGGGTGTGACCAACGCTGTAGACAAGCTGCAGCAAGAGTTCCACTGCTGTG
GCAGCAACAACTCTCGAGACTGGAGAGACAGCGAGTGGATCCGCTCTGGTGAGGCAGACAGCCG
TGTGGTCCCTGACAGCTGCTGTAAGACTGTGGTAACTGGCTGTGGTAAGCGGGAGCACGCCTCC
AACATCTATAAAGTGGAAGGTGGCTGCATCACTAAGCTGGAGTCCTTCATTCAGGAGCACCTGC
GGGTCATCGGGGCCGTGGGCATTGGCATCGCCTGTGTGCAGGTCTTCGGCATGATCTTCACCTG
CTGCTTGTACAGAAGCCTCAAGCTGGAGCACTACTGACCATGGTGCCAGGCCAGAAGGCCAGCC
TCGCGCTGTGTCCCAGCCCCCCACTACTGAACACTACTGAGTTAGACTGCTGACTGCCAGAGAG
GTAGCTGCCCTCATGCCATTACCATGTCCCCTGGTGGCTCCACCTCCGTGGTAGCTTCAAGTGC
CTTTCCCTGCACACCAAAGTCCCAAAGCTTGAGGCAGCGTACTTGCCCCAGCATTAACAAGAGG
GGGCATGTATGCCAGTGTTGGGCTAGGCCTGGCTAGTAGAGTAGGGTTTAGATTACTTGACAGA
AGTGCCTCTTATGTAGACTGCTTCCCTTTGGGTAGCTGTGATCTGCAGTAAGTCTGGGGAGAAT
CCGAGCATACCACTACACGGTGGGTAAGAGCAGGTGGGAAGGGGCCTTTCTGGTTGGGCTAGGC
ACCTTTCATGCCTGCTGCCAGGAACCCTCAGATAGGGCAAGCTTAGGGGAACTGGAATCCCACA
CTGTATGCTGTCCTTTCCACACAGGCCTCTTGCTCCTAACGGCCTCAGCCCTGGGCTTTTCCTA
CTACTGATAACACTATGTAAATGTTCAACGTTCCTGTACACTGTCTCTTTTGGGAACATCTCTG
AATGGAGCATGGCTGTTTTCATTCACTGCTGTATCCCAGATGCCCACAGATGCTCCTGCTGTGT
GACAGGTGCTCAATAAATGTATAAGCAGTCGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_071968	(Get FASTA)	NCBI Sequence Viewer
	XP_006230638	(Get FASTA)	NCBI Sequence Viewer
	XP_017445147	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF05763	(Get FASTA)	NCBI Sequence Viewer
	AAH72515	(Get FASTA)	NCBI Sequence Viewer
	EDM12073	(Get FASTA)	NCBI Sequence Viewer
	EDM12074	(Get FASTA)	NCBI Sequence Viewer
	EDM12075	(Get FASTA)	NCBI Sequence Viewer
	EDM12076	(Get FASTA)	NCBI Sequence Viewer
	EDM12077	(Get FASTA)	NCBI Sequence Viewer
	EDM12078	(Get FASTA)	NCBI Sequence Viewer
	EDM12079	(Get FASTA)	NCBI Sequence Viewer
	EDM12080	(Get FASTA)	NCBI Sequence Viewer
	EDM12081	(Get FASTA)	NCBI Sequence Viewer
	EDM12082	(Get FASTA)	NCBI Sequence Viewer
	EDM12083	(Get FASTA)	NCBI Sequence Viewer
	EDM12084	(Get FASTA)	NCBI Sequence Viewer
	EDM12085	(Get FASTA)	NCBI Sequence Viewer
	EDM12086	(Get FASTA)	NCBI Sequence Viewer
	EDM12087	(Get FASTA)	NCBI Sequence Viewer
	EDM12088	(Get FASTA)	NCBI Sequence Viewer
	Q9QZA6	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_071968 ⟸ NM_022523

- UniProtKB:

Q9QZA6 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGEFNEKKATCGTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASSTYLATAYIL
VVAGVVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYVYYQQLNTELKENLKD
TMIKRYHQSGHEGVTNAVDKLQQEFHCCGSNNSRDWRDSEWIRSGEADSRVVPDSCCKTVVTGC
GKREHASNIYKVEGGCITKLESFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY

hide sequence

RefSeq Acc Id:	XP_006230638 ⟸ XM_006230576
- Peptide Label:	isoform X1
- UniProtKB:	Q9QZA6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGEFNEKKATCGTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASSTYLATAYIL VVAGVVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYVYYQQLNTELKENLKD TMIKRYHQSGHEGVTNAVDKLQQEFHCCGSNNSRDWRDSEWIRSGEADSRVVPDSCCKTVVTGC GKREHASNIYKVEGGCITKLESFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY hide sequence

RefSeq Acc Id:	XP_017445147 ⟸ XM_017589658
- Peptide Label:	isoform X1
- UniProtKB:	Q9QZA6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGEFNEKKATCGTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASSTYLATAYIL VVAGVVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYVYYQQLNTELKENLKD TMIKRYHQSGHEGVTNAVDKLQQEFHCCGSNNSRDWRDSEWIRSGEADSRVVPDSCCKTVVTGC GKREHASNIYKVEGGCITKLESFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY hide sequence

RefSeq Acc Id:

ENSRNOP00000073673 ⟸ ENSRNOT00000089241

RefSeq Acc Id:

ENSRNOP00000066223 ⟸ ENSRNOT00000072434

RefSeq Acc Id:

ENSRNOP00000026080 ⟸ ENSRNOT00000026079

RefSeq Acc Id:

ENSRNOP00000096244 ⟸ ENSRNOT00000107678

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9QZA6-F1-model_v2	AlphaFold	Q9QZA6	1-253	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690548

Promoter ID:

EPDNEW_R1072

Type:

initiation region

Name:

Cd151_1

Description:

CD151 molecule

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	214,446,639 - 214,446,699	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621290	AgrOrtholog
BioCyc Gene	G2FUF-56947	BioCyc
Ensembl Genes	ENSRNOG00000019215	Ensembl
	ENSRNOG00000046094	Ensembl
	ENSRNOG00000062573	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000073673	ENTREZGENE
	ENSRNOP00000073673.1	UniProtKB/Swiss-Prot
	ENSRNOP00000096244.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000089241	ENTREZGENE
	ENSRNOT00000089241.2	UniProtKB/Swiss-Prot
	ENSRNOT00000107678.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.1450.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7104419	IMAGE-MGC_LOAD
InterPro	Tetraspanin	UniProtKB/Swiss-Prot
	Tetraspanin/Peripherin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Tetraspanin_animals	UniProtKB/TrEMBL
	Tetraspanin_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Tetraspanin_EC2_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:64315	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:91689	IMAGE-MGC_LOAD
NCBI Gene	64315	ENTREZGENE
PANTHER	CD151 ANTIGEN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR19282	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Tetraspanin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cd151	PhenoGen
PIRSF	Tetraspanin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS	TMFOUR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	TM4_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF48652	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6AQJ7_RAT	UniProtKB/TrEMBL
	CD151_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Cd151	CD151 molecule (Raph blood group)	LOC100911730	CD151 antigen-like	Data Merged	737654	PROVISIONAL
2012-07-05	LOC100911730	CD151 antigen-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-06-27	Cd151	CD151 molecule (Raph blood group)	Cd151	CD151 antigen (Raph blood group)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-10	Cd151	CD151 antigen (Raph blood group)	Cd151	CD151 molecule (Raph blood group)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-22	Cd151	CD151 molecule (Raph blood group)	Cd151	CD151 antigen	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Cd151	CD151 antigen			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Cd151				Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_drugs	expression in the frontal cortex decreases in response to chronic treatment with lithium, carbamazepine, and valproate	632481

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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