Gripap1 (GRIP1 associated protein 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gripap1 (GRIP1 associated protein 1) Rattus norvegicus
Analyze
Symbol: Gripap1
Name: GRIP1 associated protein 1
RGD ID: 621249
Description: Enables guanyl-nucleotide exchange factor activity and ionotropic glutamate receptor binding activity. Involved in negative regulation of receptor clustering; regulation of neurotransmitter receptor transport, endosome to postsynaptic membrane; and regulation of recycling endosome localization within postsynapse. Located in dendrite; neuronal cell body; and presynaptic membrane. Is active in glutamatergic synapse. Is extrinsic component of postsynaptic early endosome membrane. Orthologous to human GRIPAP1 (GRIP1 associated protein 1); INTERACTS WITH 2,4-dinitrotoluene; 3-chloropropane-1,2-diol; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GRASP-1; Grasp1; GRIP-associated protein 1; GRIP1-associated protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,350,817 - 17,380,626 (-)NCBIGRCr8
mRatBN7.2X14,678,896 - 14,708,747 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,678,898 - 14,708,679 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX19,492,440 - 19,522,378 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,560,734 - 20,590,671 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,825,905 - 16,855,840 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X15,523,929 - 15,553,702 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,523,929 - 15,553,720 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,305,164 - 16,334,935 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,713,439 - 26,743,461 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X26,766,907 - 26,796,928 (-)NCBI
CeleraX14,763,609 - 14,793,412 (-)NCBICelera
Cytogenetic MapXq12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Neuron specific Rab4 effector GRASP-1 coordinates membrane specialization and maturation of recycling endosomes. Hoogenraad CC, etal., PLoS Biol. 2010 Jan 19;8(1):e1000283. doi: 10.1371/journal.pbio.1000283.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. GRASP-1: a neuronal RasGEF associated with the AMPA receptor/GRIP complex. Ye B, etal., Neuron 2000 Jun;26(3):603-17.
Additional References at PubMed
PMID:8889548   PMID:22516433   PMID:22871113   PMID:34245609  


Genomics

Comparative Map Data
Gripap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,350,817 - 17,380,626 (-)NCBIGRCr8
mRatBN7.2X14,678,896 - 14,708,747 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,678,898 - 14,708,679 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX19,492,440 - 19,522,378 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,560,734 - 20,590,671 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,825,905 - 16,855,840 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X15,523,929 - 15,553,702 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,523,929 - 15,553,720 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,305,164 - 16,334,935 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,713,439 - 26,743,461 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X26,766,907 - 26,796,928 (-)NCBI
CeleraX14,763,609 - 14,793,412 (-)NCBICelera
Cytogenetic MapXq12NCBI
GRIPAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X48,973,723 - 49,002,264 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX48,973,720 - 49,002,265 (-)EnsemblGRCh38hg38GRCh38
GRCh37X48,830,134 - 48,858,675 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,715,078 - 48,743,619 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X48,589,582 - 48,614,923NCBI
CeleraX52,807,255 - 52,833,383 (+)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX46,487,542 - 46,516,750 (-)NCBIHuRef
CHM1_1X48,861,436 - 48,889,990 (-)NCBICHM1_1
T2T-CHM13v2.0X48,384,190 - 48,412,744 (-)NCBIT2T-CHM13v2.0
Gripap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,656,009 - 7,686,805 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,656,004 - 7,686,806 (+)EnsemblGRCm39 Ensembl
GRCm38X7,789,961 - 7,820,567 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,789,765 - 7,820,567 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X7,367,121 - 7,397,689 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X6,946,954 - 6,977,522 (+)NCBIMGSCv36mm8
CeleraX3,649,702 - 3,680,935 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.51NCBI
Gripap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543500,340 - 527,267 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955543500,340 - 527,243 (-)NCBIChiLan1.0ChiLan1.0
GRIPAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X50,463,524 - 50,492,167 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X50,466,901 - 50,495,545 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X41,271,762 - 41,300,327 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X49,128,760 - 49,157,059 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,128,760 - 49,157,059 (-)Ensemblpanpan1.1panPan2
GRIPAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,121,646 - 42,145,330 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,121,301 - 42,145,218 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,497,529 - 16,520,822 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X42,258,246 - 42,281,569 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX42,257,921 - 42,281,517 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X42,244,505 - 42,267,815 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X42,232,713 - 42,255,999 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,326,953 - 42,350,247 (-)NCBIUU_Cfam_GSD_1.0
Gripap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,652,314 - 34,676,582 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936721891,824 - 916,984 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936721892,704 - 916,965 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRIPAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,043,029 - 43,070,364 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,043,613 - 43,070,363 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,897,905 - 47,917,864 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GRIPAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,093,225 - 46,120,097 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX46,091,584 - 46,120,097 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607611,578,935 - 11,606,742 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gripap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624893753,111 - 778,539 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624893753,111 - 778,563 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gripap1
96 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:107
Count of miRNA genes:92
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000012646
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X144797220991088Rat
631204Gluco15Glucose level QTL 150.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X162371522646544Rat

Markers in Region
AI854681  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X14,678,962 - 14,679,049 (+)MAPPERmRatBN7.2
Rnor_6.0X15,523,996 - 15,524,082NCBIRnor6.0
Rnor_5.0X16,305,231 - 16,305,317UniSTSRnor5.0
RGSC_v3.4X26,713,506 - 26,713,592UniSTSRGSC3.4
CeleraX14,763,676 - 14,763,762UniSTS
Cytogenetic MapXq13UniSTS
RH140691  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X14,696,437 - 14,696,652 (+)MAPPERmRatBN7.2
Rnor_6.0X15,541,473 - 15,541,687NCBIRnor6.0
Rnor_5.0X16,322,706 - 16,322,920UniSTSRnor5.0
RGSC_v3.4X26,730,983 - 26,731,197UniSTSRGSC3.4
CeleraX14,781,183 - 14,781,397UniSTS
Cytogenetic MapXq13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC130624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF274057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF274058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ780554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000012646   ⟹   ENSRNOP00000012646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX14,678,898 - 14,708,666 (-)Ensembl
Rnor_6.0 EnsemblX15,523,929 - 15,553,720 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102832   ⟹   ENSRNOP00000097700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX14,678,899 - 14,708,679 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104859   ⟹   ENSRNOP00000081274
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX14,678,898 - 14,702,524 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110470   ⟹   ENSRNOP00000081157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX14,678,898 - 14,706,808 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111277   ⟹   ENSRNOP00000085406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX14,678,898 - 14,708,665 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118453   ⟹   ENSRNOP00000084554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX14,678,898 - 14,702,524 (-)Ensembl
RefSeq Acc Id: NM_053807   ⟹   NP_446259
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,588 (-)NCBI
mRatBN7.2X14,678,896 - 14,708,666 (-)NCBI
Rnor_6.0X15,523,929 - 15,553,702 (-)NCBI
Rnor_5.0X16,305,164 - 16,334,935 (-)NCBI
RGSC_v3.4X26,713,439 - 26,743,461 (-)RGD
CeleraX14,763,609 - 14,793,412 (-)RGD
Sequence:
RefSeq Acc Id: XM_039099399   ⟹   XP_038955327
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,619 (-)NCBI
mRatBN7.2X14,678,896 - 14,708,747 (-)NCBI
RefSeq Acc Id: XM_039099400   ⟹   XP_038955328
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,619 (-)NCBI
mRatBN7.2X14,678,896 - 14,708,747 (-)NCBI
RefSeq Acc Id: XM_039099401   ⟹   XP_038955329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,620 (-)NCBI
mRatBN7.2X14,678,896 - 14,708,747 (-)NCBI
RefSeq Acc Id: XM_039099403   ⟹   XP_038955331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,619 (-)NCBI
mRatBN7.2X14,678,896 - 14,708,747 (-)NCBI
RefSeq Acc Id: XM_039099404   ⟹   XP_038955332
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,619 (-)NCBI
mRatBN7.2X14,678,896 - 14,708,747 (-)NCBI
RefSeq Acc Id: XM_039099405   ⟹   XP_038955333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,620 (-)NCBI
mRatBN7.2X14,678,896 - 14,708,747 (-)NCBI
RefSeq Acc Id: XM_063279737   ⟹   XP_063135807
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,624 (-)NCBI
RefSeq Acc Id: XM_063279738   ⟹   XP_063135808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,625 (-)NCBI
RefSeq Acc Id: XM_063279739   ⟹   XP_063135809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,625 (-)NCBI
RefSeq Acc Id: XM_063279740   ⟹   XP_063135810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,625 (-)NCBI
RefSeq Acc Id: XM_063279741   ⟹   XP_063135811
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,625 (-)NCBI
RefSeq Acc Id: XM_063279742   ⟹   XP_063135812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,625 (-)NCBI
RefSeq Acc Id: XM_063279743   ⟹   XP_063135813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,624 (-)NCBI
RefSeq Acc Id: XM_063279744   ⟹   XP_063135814
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,626 (-)NCBI
RefSeq Acc Id: XM_063279745   ⟹   XP_063135815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,620 (-)NCBI
RefSeq Acc Id: XM_063279746   ⟹   XP_063135816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,625 (-)NCBI
RefSeq Acc Id: XM_063279747   ⟹   XP_063135817
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,625 (-)NCBI
RefSeq Acc Id: XM_063279748   ⟹   XP_063135818
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,620 (-)NCBI
RefSeq Acc Id: XM_063279749   ⟹   XP_063135819
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,626 (-)NCBI
RefSeq Acc Id: XM_063279750   ⟹   XP_063135820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,625 (-)NCBI
RefSeq Acc Id: XM_063279751   ⟹   XP_063135821
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,626 (-)NCBI
RefSeq Acc Id: XM_063279752   ⟹   XP_063135822
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,620 (-)NCBI
RefSeq Acc Id: XM_063279753   ⟹   XP_063135823
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,620 (-)NCBI
RefSeq Acc Id: XM_063279754   ⟹   XP_063135824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X17,350,817 - 17,380,620 (-)NCBI
Protein Sequences
Protein RefSeqs NP_446259 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955327 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955328 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955329 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955331 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955332 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955333 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135807 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135808 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135809 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135810 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135811 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135812 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135813 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135814 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135815 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135816 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135817 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135818 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135819 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135820 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135821 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135822 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135823 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135824 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF82298 (Get FASTA)   NCBI Sequence Viewer  
  AAF82299 (Get FASTA)   NCBI Sequence Viewer  
  EDL83826 (Get FASTA)   NCBI Sequence Viewer  
  EDL83827 (Get FASTA)   NCBI Sequence Viewer  
  EDL83828 (Get FASTA)   NCBI Sequence Viewer  
  EDL83829 (Get FASTA)   NCBI Sequence Viewer  
  EDL83830 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000012646.7
  ENSRNOP00000081157.1
  ENSRNOP00000081274.1
  ENSRNOP00000084554.1
  ENSRNOP00000085406.1
  ENSRNOP00000097700.1
GenBank Protein Q9JHZ4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_446259   ⟸   NM_053807
- UniProtKB: Q9JHZ4 (UniProtKB/Swiss-Prot),   Q9JHZ3 (UniProtKB/Swiss-Prot),   A6KP79 (UniProtKB/TrEMBL),   A0A8I5ZRM3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012646   ⟸   ENSRNOT00000012646
RefSeq Acc Id: XP_038955332   ⟸   XM_039099404
- Peptide Label: isoform X17
- UniProtKB: A6KP78 (UniProtKB/TrEMBL),   A0A8I5ZRM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955327   ⟸   XM_039099399
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZRM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955331   ⟸   XM_039099403
- Peptide Label: isoform X15
- UniProtKB: A0A8I5ZRM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955333   ⟸   XM_039099405
- Peptide Label: isoform X18
- UniProtKB: A0A8I5ZRM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955328   ⟸   XM_039099400
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZRM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955329   ⟸   XM_039099401
- Peptide Label: isoform X13
- UniProtKB: A0A8I5ZRM3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000081157   ⟸   ENSRNOT00000110470
Ensembl Acc Id: ENSRNOP00000081274   ⟸   ENSRNOT00000104859
Ensembl Acc Id: ENSRNOP00000085406   ⟸   ENSRNOT00000111277
Ensembl Acc Id: ENSRNOP00000084554   ⟸   ENSRNOT00000118453
Ensembl Acc Id: ENSRNOP00000097700   ⟸   ENSRNOT00000102832
RefSeq Acc Id: XP_063135821   ⟸   XM_063279751
- Peptide Label: isoform X21
- UniProtKB: A0A8I6ARM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135819   ⟸   XM_063279749
- Peptide Label: isoform X19
- UniProtKB: A0A8I6ARM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135814   ⟸   XM_063279744
- Peptide Label: isoform X10
- UniProtKB: A0A8I6ARM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135820   ⟸   XM_063279750
- Peptide Label: isoform X20
- UniProtKB: A0A8I5ZRM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135817   ⟸   XM_063279747
- Peptide Label: isoform X14
- UniProtKB: A0A8I6ARM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135810   ⟸   XM_063279740
- Peptide Label: isoform X4
- UniProtKB: A0A8I6ARM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135808   ⟸   XM_063279738
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ARM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135816   ⟸   XM_063279746
- Peptide Label: isoform X12
- UniProtKB: A0A8I6ARM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135812   ⟸   XM_063279742
- Peptide Label: isoform X7
- UniProtKB: A0A8I6ARM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135809   ⟸   XM_063279739
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ARM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135811   ⟸   XM_063279741
- Peptide Label: isoform X5
- UniProtKB: A0A8I6ARM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135813   ⟸   XM_063279743
- Peptide Label: isoform X9
- UniProtKB: A0A8I6ARM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135807   ⟸   XM_063279737
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ARM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135824   ⟸   XM_063279754
- Peptide Label: isoform X24
- UniProtKB: A0A8I5ZRM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135823   ⟸   XM_063279753
- Peptide Label: isoform X23
- UniProtKB: A0A8I5ZSM8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135815   ⟸   XM_063279745
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZRM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135818   ⟸   XM_063279748
- Peptide Label: isoform X16
- UniProtKB: A0A8I5ZRM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135822   ⟸   XM_063279752
- Peptide Label: isoform X22
- UniProtKB: A0A8I5ZSM8 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JHZ4-F1-model_v2 AlphaFold Q9JHZ4 1-837 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701742
Promoter ID:EPDNEW_R12265
Type:initiation region
Name:Gripap1_1
Description:GRIP1 associated protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X15,553,715 - 15,553,775EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621249 AgrOrtholog
BioCyc Gene G2FUF-2922 BioCyc
Ensembl Genes ENSRNOG00000009071 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012646.8 UniProtKB/Swiss-Prot
  ENSRNOT00000102832.1 UniProtKB/TrEMBL
  ENSRNOT00000104859.1 UniProtKB/TrEMBL
  ENSRNOT00000110470.1 UniProtKB/TrEMBL
  ENSRNOT00000111277.1 UniProtKB/Swiss-Prot
  ENSRNOT00000118453.1 UniProtKB/TrEMBL
InterPro GRIPAP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:116493 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 116493 ENTREZGENE
PANTHER GRIP1-ASSOCIATED PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR18978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gripap1 PhenoGen
RatGTEx ENSRNOG00000009071 RatGTEx
  ENSRNOG00055028286 RatGTEx
  ENSRNOG00060024104 RatGTEx
  ENSRNOG00065011223 RatGTEx
UniProt A0A8I5ZRM3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZSM8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A293_RAT UniProtKB/TrEMBL
  A0A8I6ARM9 ENTREZGENE, UniProtKB/TrEMBL
  A6KP78 ENTREZGENE, UniProtKB/TrEMBL
  A6KP79 ENTREZGENE, UniProtKB/TrEMBL
  A6KP80_RAT UniProtKB/TrEMBL
  A6KP81_RAT UniProtKB/TrEMBL
  A6KP82_RAT UniProtKB/TrEMBL
  GRAP1_RAT UniProtKB/Swiss-Prot
  Q9JHZ3 ENTREZGENE
  Q9JHZ4 ENTREZGENE
UniProt Secondary Q9JHZ3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Gripap1  GRIP1 associated protein 1  Grasp1  GRIP-associated protein 1  Symbol and Name updated 1299863 APPROVED
2002-08-07 Grasp1  GRIP-associated protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_physical_interaction interacts with GRIP and AMPA receptors 632892