Rps24 (ribosomal protein S24) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Rps24 (ribosomal protein S24) Rattus norvegicus
Analyze
Symbol: Rps24 (Ensembl: Rps24-ps19)
Name: ribosomal protein S24 (Ensembl:ribosomal protein S24, pseudogene 19)
RGD ID: 621040
Description: Enables translation initiation factor binding activity. Involved in liver regeneration. Part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-blackfan anemia 3. Orthologous to human RPS24 (ribosomal protein S24); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2-nitrofluorene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 40S ribosomal protein S24; L33; small ribosomal subunit protein eS24
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rps24-ps11  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81695,429 - 101,146 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1696,484 - 101,144 (+)EnsemblGRCr8
mRatBN7.21689,538 - 94,267 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1689,604 - 94,279 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1695,956 - 100,543 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0161,241,781 - 1,246,368 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.016103,028 - 107,615 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.016757,390 - 762,091 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl16757,403 - 762,075 (+)Ensemblrn6Rnor6.0
Rnor_5.016752,306 - 757,005 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41643,766 - 48,353 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1676,361 - 80,948 (+)NCBICelera
RGSC_v3.11643,765 - 48,353 (+)NCBI
Cytogenetic Map16p16NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
1,4-dichlorobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,6-dimethoxyphenol  (ISO)
2-nitrofluorene  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
aflatoxin B1  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
benzene  (EXP)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
diethylstilbestrol  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
folic acid  (ISO)
furfural  (ISO)
glafenine  (EXP)
indometacin  (EXP)
ivermectin  (ISO)
L-methionine  (ISO)
Mesaconitine  (EXP)
methapyrilene  (EXP)
methidathion  (ISO)
methylparaben  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
nicotine  (ISO)
orotic acid  (EXP)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
PhIP  (EXP)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium fluoride  (ISO)
succimer  (ISO)
tetrachloromethane  (EXP)
thiram  (ISO)
tolcapone  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Identification of proteins of the 40 S ribosomal subunit involved in interaction with initiation factor eIF-2 in the quaternary initiation complex by means of monospecific antibodies. Bommer UA, etal., FEBS Lett. 1988 Jun 6;233(1):114-8.
3. The primary structure of rat ribosomal protein S24. Chan YL, etal., FEBS Lett 1990 Mar 26;262(2):253-5.
4. Differential display and cloning of messenger RNAs from the late phase of rat liver regeneration. Kar S and Carr BI, Biochem Biophys Res Commun. 1995 Jul 6;212(1):21-6.
5. Immunoelectron microscopic studies on the location of ribosomal proteins on the surface of the 40S ribosomal subunit from rat liver. Lutsch G, etal., Eur J Cell Biol. 1990 Feb;51(1):140-50.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
13. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:2275563   PMID:8706699   PMID:15489334   PMID:15883184   PMID:17186470   PMID:18230666   PMID:18697920   PMID:19946888   PMID:21630459   PMID:22658674   PMID:22681889   PMID:30053369  
PMID:35352799  


Genomics

Comparative Map Data
Rps24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81695,429 - 101,146 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1696,484 - 101,144 (+)EnsemblGRCr8
mRatBN7.21689,538 - 94,267 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1689,604 - 94,279 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1695,956 - 100,543 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0161,241,781 - 1,246,368 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.016103,028 - 107,615 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.016757,390 - 762,091 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl16757,403 - 762,075 (+)Ensemblrn6Rnor6.0
Rnor_5.016752,306 - 757,005 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41643,766 - 48,353 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1676,361 - 80,948 (+)NCBICelera
RGSC_v3.11643,765 - 48,353 (+)NCBI
Cytogenetic Map16p16NCBI
RPS24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381078,033,863 - 78,056,806 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1078,033,760 - 78,056,813 (+)Ensemblhg38GRCh38
GRCh371079,793,621 - 79,816,564 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361079,463,580 - 79,470,480 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341079,463,628 - 79,470,466NCBI
Celera1073,080,118 - 73,103,169 (+)NCBICelera
Cytogenetic Map10q22.3NCBI
HuRef1073,788,531 - 73,811,583 (+)NCBIHuRef
CHM1_11080,076,252 - 80,099,305 (+)NCBICHM1_1
T2T-CHM13v2.01078,902,909 - 78,925,852 (+)NCBIT2T-CHM13v2.0
Rps24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391424,540,786 - 24,545,925 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1424,537,193 - 24,547,027 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381424,490,678 - 24,496,960 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1424,487,125 - 24,496,959 (+)Ensemblmm10GRCm38
MGSCv371425,309,903 - 25,315,368 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361423,323,146 - 23,328,611 (+)NCBIMGSCv36mm8
Celera1420,865,550 - 20,871,015 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1414.42NCBI
Rps24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543714,434,771 - 14,443,106 (-)Ensembl
ChiLan1.0NW_00495543714,435,822 - 14,442,662 (-)NCBIChiLan1.0ChiLan1.0
RPS24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2890,182,435 - 90,189,360 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11090,187,765 - 90,194,684 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01074,554,301 - 74,561,240 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11077,217,260 - 77,224,186 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1077,217,228 - 77,238,519 (+)EnsemblpanPan2panpan1.1
RPS24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1427,886,872 - 27,893,145 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl427,877,075 - 27,908,806 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha428,011,882 - 28,018,156 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0428,188,386 - 28,194,662 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl428,178,583 - 28,209,931 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1428,063,264 - 28,069,528 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0428,262,106 - 28,268,381 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0428,615,187 - 28,621,464 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rps24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721353,069,288 - 53,075,555 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365211,561,992 - 1,568,280 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365211,562,013 - 1,568,280 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1480,473,928 - 80,480,815 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11480,473,867 - 80,480,818 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21487,005,402 - 87,012,373 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1953,400,876 - 53,407,746 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl953,398,783 - 53,407,697 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604813,821,620 - 13,828,511 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475411,218,866 - 11,225,993 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Rps24
17 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:306
Count of miRNA genes:171
Interacting mature miRNAs:195
Transcripts:ENSRNOT00000013588, ENSRNOT00000043005, ENSRNOT00000064788
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12903952Cm117Cardiac mass QTL 1170.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)161839230Rat
12903281Cm116Cardiac mass QTL 1160.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)161839230Rat
12903954Bw186Body weight QTL 1860.011body mass (VT:0001259)body weight (CMO:0000012)161839230Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133425095Rat
12903278Am16Aortic mass QTL 160.019aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)161839230Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126734272Rat
12903279Cm115Cardiac mass QTL 1150.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)161839230Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139568015Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16126734272Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139568015Rat
2301404Bp321Blood pressure QTL 3210.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)161839230Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126734272Rat

Markers in Region
D16Chm23  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21688,524 - 88,716 (+)MAPPERmRatBN7.2
Rnor_6.016756,352 - 756,541NCBIRnor6.0
Rnor_5.016751,266 - 751,455UniSTSRnor5.0
RGSC_v3.41642,656 - 42,845UniSTSRGSC3.4
Celera1675,251 - 75,440UniSTS
Cytogenetic Map16p16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC058140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M89646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X52445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000013588   ⟹   ENSRNOP00000013588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1689,604 - 94,244 (+)Ensembl
Rnor_6.0 Ensembl16757,452 - 762,075 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000064788   ⟹   ENSRNOP00000059382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1689,604 - 92,750 (+)Ensembl
Rnor_6.0 Ensembl16757,403 - 760,568 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101331   ⟹   ENSRNOP00000082107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1689,604 - 94,279 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101860   ⟹   ENSRNOP00000087473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1689,604 - 94,265 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118714   ⟹   ENSRNOP00000084419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1689,604 - 94,279 (+)Ensembl
RefSeq Acc Id: NM_031112   ⟹   NP_112374
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81696,517 - 101,104 (+)NCBI
mRatBN7.21689,637 - 94,225 (+)NCBI
Rnor_6.016757,462 - 762,049 (+)NCBI
Rnor_5.016752,306 - 757,005 (+)NCBI
RGSC_v3.41643,766 - 48,353 (+)RGD
Celera1676,361 - 80,948 (+)RGD
Sequence:
RefSeq Acc Id: XM_006252531   ⟹   XP_006252593
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81696,376 - 101,146 (+)NCBI
mRatBN7.21689,539 - 94,267 (+)NCBI
Rnor_6.016757,390 - 762,091 (+)NCBI
Rnor_5.016752,306 - 757,005 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252533   ⟹   XP_006252595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81696,376 - 101,146 (+)NCBI
mRatBN7.21689,540 - 94,267 (+)NCBI
Rnor_6.016757,391 - 762,091 (+)NCBI
Rnor_5.016752,306 - 757,005 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063275774   ⟹   XP_063131844
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81696,376 - 101,146 (+)NCBI
RefSeq Acc Id: XM_063275775   ⟹   XP_063131845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81696,554 - 101,146 (+)NCBI
RefSeq Acc Id: XM_063275776   ⟹   XP_063131846
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81695,429 - 101,146 (+)NCBI
RefSeq Acc Id: NP_112374   ⟸   NM_031112
- UniProtKB: Q6PEC9 (UniProtKB/Swiss-Prot),   P62850 (UniProtKB/Swiss-Prot),   A6KMF4 (UniProtKB/TrEMBL),   A0A0H2UHH9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252593   ⟸   XM_006252531
- Peptide Label: isoform X3
- UniProtKB: A6KMF6 (UniProtKB/TrEMBL),   A0A0H2UHH9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252595   ⟸   XM_006252533
- Peptide Label: isoform X4
- UniProtKB: A6KMF5 (UniProtKB/TrEMBL),   A0A0H2UHH9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013588   ⟸   ENSRNOT00000013588
Ensembl Acc Id: ENSRNOP00000059382   ⟸   ENSRNOT00000064788
Ensembl Acc Id: ENSRNOP00000082107   ⟸   ENSRNOT00000101331
Ensembl Acc Id: ENSRNOP00000084419   ⟸   ENSRNOT00000118714
Ensembl Acc Id: ENSRNOP00000087473   ⟸   ENSRNOT00000101860
RefSeq Acc Id: XP_063131846   ⟸   XM_063275776
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063131844   ⟸   XM_063275774
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A7A5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131845   ⟸   XM_063275775
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62850-F1-model_v2 AlphaFold P62850 1-133 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699889
Promoter ID:EPDNEW_R10413
Type:multiple initiation site
Name:Rps24_1
Description:ribosomal protein S24
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.016757,456 - 757,516EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621040 AgrOrtholog
BioCyc Gene G2FUF-12314 BioCyc
Ensembl Genes ENSRNOG00000010189 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000013588 ENTREZGENE
  ENSRNOT00000013588.8 UniProtKB/Swiss-Prot
  ENSRNOT00000101331 ENTREZGENE
  ENSRNOT00000101331.1 UniProtKB/Swiss-Prot
  ENSRNOT00000101860 ENTREZGENE
  ENSRNOT00000118714 ENTREZGENE
Gene3D-CATH 3.30.70.3370 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6919886 IMAGE-MGC_LOAD
InterPro eRP_eS24_sf UniProtKB/Swiss-Prot
  Ribosomal_L23/L15e_core_dom_sf UniProtKB/Swiss-Prot
  Ribosomal_S24e UniProtKB/Swiss-Prot
  Ribosomal_S24e_CS UniProtKB/Swiss-Prot
KEGG Report rno:81776 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72788 IMAGE-MGC_LOAD
NCBI Gene 81776 ENTREZGENE
PANTHER PTHR10496 UniProtKB/Swiss-Prot
Pfam Ribosomal_S24e UniProtKB/Swiss-Prot
PhenoGen Rps24 PhenoGen
PROSITE RIBOSOMAL_S24E UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000010189 RatGTEx
Superfamily-SCOP SSF54189 UniProtKB/Swiss-Prot
UniProt A0A0H2UHH9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZX70_RAT UniProtKB/TrEMBL
  A0A8I6A7A5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QSZ3_RAT UniProtKB/TrEMBL
  A6KMF4 ENTREZGENE, UniProtKB/TrEMBL
  A6KMF5 ENTREZGENE, UniProtKB/TrEMBL
  A6KMF6 ENTREZGENE, UniProtKB/TrEMBL
  A6KMF7_RAT UniProtKB/TrEMBL
  A6KMF8_RAT UniProtKB/TrEMBL
  P62850 ENTREZGENE
  Q6PEC9 ENTREZGENE
  RS24_RAT UniProtKB/Swiss-Prot
UniProt Secondary P16632 UniProtKB/Swiss-Prot
  Q6PEC9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Rps24  ribosomal protein S24      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Rps24  ribosomal protein S24      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein 133 amino acids and has a molecular mass of 15,413 634027