Rps11 (ribosomal protein S11) - Rat Genome Database

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Gene: Rps11 (ribosomal protein S11) Rattus norvegicus
Analyze
Symbol: Rps11
Name: ribosomal protein S11
RGD ID: 621026
Description: Predicted to be a structural constituent of ribosome. Involved in osteoblast differentiation. Located in membrane. Part of cytosolic small ribosomal subunit. Orthologous to human RPS11 (ribosomal protein S11); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 40S ribosomal protein S11; small ribosomal subunit protein uS17
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rps11-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,742,153 - 104,744,261 (-)NCBIGRCr8
GRCr8 Ensembl1104,742,155 - 104,744,337 (-)EnsemblGRCr8 Ensembl
mRatBN7.2195,605,690 - 95,607,798 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,605,692 - 95,607,874 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1100,991,082 - 100,993,190 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,463,749 - 109,465,857 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,754,156 - 102,756,264 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,116,641 - 101,118,749 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,116,635 - 101,118,825 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,182,148 - 102,184,258 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,596,744 - 95,598,852 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera189,864,107 - 89,866,215 (-)NCBICelera
RGSC_v3.1195,674,854 - 95,676,963 (-)NCBI
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
Brodifacoum  (EXP)
bromobenzene  (EXP)
C60 fullerene  (EXP)
cadmium dichloride  (EXP)
caffeine  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
clobetasol  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
crocidolite asbestos  (ISO)
decabromodiphenyl ether  (ISO)
dibutyl phthalate  (EXP)
dichlorine  (EXP)
diuron  (ISO)
ethanol  (ISO)
flutamide  (EXP)
FR900359  (ISO)
furfural  (ISO)
genistein  (EXP,ISO)
gentamycin  (EXP)
glafenine  (EXP)
hydralazine  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-nitrosodiethylamine  (EXP)
nimesulide  (EXP)
nitrates  (ISO)
ozone  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
PhIP  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium chloride  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
tolcapone  (EXP)
Tributyltin oxide  (ISO)
triphenyl phosphate  (ISO)
tungsten  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29. Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
3. Differential expression profiling of membrane proteins by quantitative proteomics in a human mesenchymal stem cell line undergoing osteoblast differentiation. Foster LJ, etal., Stem Cells. 2005 Oct;23(9):1367-77.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
12. Nucleotide sequence of cloned cDNA specific for rat ribosomal protein S11. Tanaka T, etal., J Biol Chem 1985 May 25;260(10):6329-33.
Additional References at PubMed
PMID:8706699   PMID:15883184   PMID:16791210   PMID:16854843   PMID:19056867   PMID:19946888   PMID:21423176   PMID:22658674   PMID:23979707   PMID:24625528   PMID:29476059   PMID:30053369  


Genomics

Comparative Map Data
Rps11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,742,153 - 104,744,261 (-)NCBIGRCr8
GRCr8 Ensembl1104,742,155 - 104,744,337 (-)EnsemblGRCr8 Ensembl
mRatBN7.2195,605,690 - 95,607,798 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,605,692 - 95,607,874 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1100,991,082 - 100,993,190 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,463,749 - 109,465,857 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,754,156 - 102,756,264 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,116,641 - 101,118,749 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,116,635 - 101,118,825 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,182,148 - 102,184,258 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,596,744 - 95,598,852 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera189,864,107 - 89,866,215 (-)NCBICelera
RGSC_v3.1195,674,854 - 95,676,963 (-)NCBI
Cytogenetic Map1q22NCBI
RPS11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,496,434 - 49,499,708 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,496,365 - 49,499,708 (+)EnsemblGRCh38hg38GRCh38
GRCh371949,999,691 - 50,002,965 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,691,446 - 54,694,756 (+)NCBINCBI36Build 36hg18NCBI36
Build 341954,691,445 - 54,694,756NCBI
Celera1946,868,975 - 46,872,285 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,377,110 - 46,380,457 (+)NCBIHuRef
CHM1_11950,001,422 - 50,004,769 (+)NCBICHM1_1
T2T-CHM13v2.01952,496,418 - 52,499,692 (+)NCBIT2T-CHM13v2.0
Rps11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,771,812 - 44,773,813 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,771,803 - 44,773,863 (-)EnsemblGRCm39 Ensembl
GRCm38745,122,388 - 45,124,389 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,122,379 - 45,124,439 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,377,758 - 52,379,759 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,990,428 - 44,992,424 (-)NCBIMGSCv36mm8
Celera740,575,480 - 40,577,481 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.14NCBI
Rps11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,354,540 - 1,356,509 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,354,540 - 1,356,509 (-)NCBIChiLan1.0ChiLan1.0
RPS11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22055,611,025 - 55,615,372 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11957,532,346 - 57,535,717 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01946,508,942 - 46,512,312 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11955,432,486 - 55,435,808 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1955,432,486 - 55,435,808 (+)Ensemblpanpan1.1panPan2
RPS11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,000,265 - 107,003,057 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,000,265 - 107,003,057 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,583,541 - 106,586,333 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,520,326 - 107,523,118 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,520,326 - 107,523,118 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,193,377 - 107,196,169 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,835,539 - 106,838,333 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,676,550 - 107,679,342 (-)NCBIUU_Cfam_GSD_1.0
Rps11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,739,465 - 21,742,245 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366643,357,505 - 3,360,484 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366643,357,682 - 3,360,435 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,577,667 - 54,580,846 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,577,414 - 54,579,797 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,306,380 - 50,308,765 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,678,361 - 42,681,698 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl642,677,690 - 42,682,759 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607322,605,473 - 22,608,857 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,723,136 - 4,726,483 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,724,620 - 4,726,593 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rps11
14 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:135
Count of miRNA genes:108
Interacting mature miRNAs:114
Transcripts:ENSRNOT00000066328
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1102780511182384005Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)192963855109494029Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1101228864146228864Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)1102359314153680016Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)199645382182701046Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)197582336142582336Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1101594089146594089Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1100345976145345976Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)196717367160111531Rat

Markers in Region
D1Bda20  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81104,742,190 - 104,742,743 (+)Marker Load Pipeline
mRatBN7.2195,605,727 - 95,606,280 (+)MAPPERmRatBN7.2
Rnor_6.01101,116,679 - 101,117,231NCBIRnor6.0
Rnor_5.01102,182,188 - 102,182,740UniSTSRnor5.0
RGSC_v3.4195,596,782 - 95,597,334UniSTSRGSC3.4
Celera189,864,145 - 89,864,697UniSTS
Cytogenetic Map1q22UniSTS
MARC_4679-4680:996679598:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr85144,572,996 - 144,573,301 (+)Marker Load Pipeline
mRatBN7.2195,606,304 - 95,606,983 (+)MAPPERmRatBN7.2
Rnor_6.01101,117,256 - 101,117,934NCBIRnor6.0
Rnor_5.01102,182,765 - 102,183,443UniSTSRnor5.0
RGSC_v3.4195,597,359 - 95,598,037UniSTSRGSC3.4
Celera189,864,722 - 89,865,400UniSTS
Cytogenetic Map1q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 11 49 113 91 90 59 25 59 6 218 97 11 93 45 60 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC099450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  K03250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000066328   ⟹   ENSRNOP00000061250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1104,742,155 - 104,744,337 (-)Ensembl
mRatBN7.2 Ensembl195,605,692 - 95,607,874 (-)Ensembl
Rnor_6.0 Ensembl1101,116,635 - 101,118,825 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1104,742,157 - 104,744,284 (-)Ensembl
mRatBN7.2 Ensembl195,605,694 - 95,607,821 (-)Ensembl
Rnor_6.0 Ensembl1101,116,635 - 101,118,772 (-)Ensembl
RefSeq Acc Id: NM_031110   ⟹   NP_112372
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,742,153 - 104,744,261 (-)NCBI
mRatBN7.2195,605,690 - 95,607,798 (-)NCBI
Rnor_6.01101,116,641 - 101,118,749 (-)NCBI
Rnor_5.01102,182,148 - 102,184,258 (-)NCBI
RGSC_v3.4195,596,744 - 95,598,852 (-)RGD
Celera189,864,107 - 89,866,215 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_112372 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA42076 (Get FASTA)   NCBI Sequence Viewer  
  AAH58465 (Get FASTA)   NCBI Sequence Viewer  
  EDM07410 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000061250
  ENSRNOP00000061250.1
GenBank Protein P62282 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_112372   ⟸   NM_031110
- UniProtKB: P62282 (UniProtKB/Swiss-Prot),   A6JAX1 (UniProtKB/TrEMBL),   Q6PDV9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000061250   ⟸   ENSRNOT00000066328
Protein Domains
Small ribosomal subunit protein uS17 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62282-F1-model_v2 AlphaFold P62282 1-158 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690024
Promoter ID:EPDNEW_R549
Type:initiation region
Name:Rps11_1
Description:ribosomal protein S11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01101,118,772 - 101,118,832EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621026 AgrOrtholog
BioCyc Gene G2FUF-59722 BioCyc
Ensembl Genes ENSRNOG00000020595 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000066328 ENTREZGENE
  ENSRNOT00000066328.4 UniProtKB/Swiss-Prot
Gene3D-CATH 2.40.50.1000 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6920362 IMAGE-MGC_LOAD
InterPro NA-bd_OB-fold UniProtKB/Swiss-Prot
  Ribosomal_S11_N UniProtKB/Swiss-Prot
  Ribosomal_S17/S11 UniProtKB/Swiss-Prot
  Ribosomal_S17_arc-typ UniProtKB/Swiss-Prot
  Ribosomal_S17_CS UniProtKB/Swiss-Prot
KEGG Report rno:81774 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72790 IMAGE-MGC_LOAD
NCBI Gene 81774 ENTREZGENE
PANTHER PTHR10744 UniProtKB/Swiss-Prot
  SMALL RIBOSOMAL SUBUNIT PROTEIN US17 UniProtKB/Swiss-Prot
Pfam Ribosomal_S17 UniProtKB/Swiss-Prot
  Ribosomal_S17_N UniProtKB/Swiss-Prot
PhenoGen Rps11 PhenoGen
PRINTS RIBOSOMALS17 UniProtKB/Swiss-Prot
PROSITE RIBOSOMAL_S17 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000020595 RatGTEx
Superfamily-SCOP SSF50249 UniProtKB/Swiss-Prot
UniProt A0A8I5ZVN9_RAT UniProtKB/TrEMBL
  A6JAX1 ENTREZGENE, UniProtKB/TrEMBL
  P62282 ENTREZGENE
  Q6PDV9 ENTREZGENE, UniProtKB/TrEMBL
  RS11_RAT UniProtKB/Swiss-Prot
UniProt Secondary P04643 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Rps11  ribosomal protein S11      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Rps11        Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein 157 amino acids 633996