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Gene: Ndufv3 (NADH:ubiquinone oxidoreductase subunit V3) Rattus norvegicus

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Symbol:

Ndufv3 (Ensembl: Ndufv3-ps1)

Name:

NADH:ubiquinone oxidoreductase subunit V3 (Ensembl:NADH:ubiquinone oxidoreductase subunit V3, pseudogene 1)

RGD ID:

621020

Description:

Predicted to be involved in mitochondrial ATP synthesis coupled electron transport. Predicted to be located in mitochondrion. Predicted to be part of respiratory chain complex I. Predicted to be active in mitochondrial inner membrane. Orthologous to human NDUFV3 (NADH:ubiquinone oxidoreductase subunit V3); PARTICIPATES IN forkhead class A signaling pathway; Alzheimer's disease pathway; Huntington's disease pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CI-9kD; complex I-9kD; MGC72817; Mipp65; NADH dehydrogenase (ubiquinone) flavoprotein 3; NADH dehydrogenase (ubiquinone) flavoprotein 3-like; NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial; NADH-ubiquinone oxidoreductase 9 kDa subunit; Ndufv3l

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Related Pseudogenes:

Ndufv3-ps1

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	9,613,786 - 9,622,941 (+)	NCBI		GRCr8
GRCr8 Ensembl	20	9,613,786 - 9,624,381 (+)	Ensembl		GRCr8 Ensembl
GRCr8 Ensembl	13	48,468,224 - 48,488,847 (-)	Ensembl		GRCr8 Ensembl
mRatBN7.2	20	9,612,462 - 9,621,622 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	45,916,312 - 45,916,638 (-)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	20	9,612,431 - 9,623,074 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	10,313,049 - 10,322,444 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	9,674,226 - 9,683,620 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	10,144,578 - 10,153,725 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	10,265,826 - 10,275,298 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	10,265,806 - 10,275,304 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	12,455,139 - 12,464,611 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	9,951,109 - 9,960,265 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	11,126,335 - 11,135,486 (+)	NCBI		Celera
RGSC_v3.1	20	9,951,416 - 9,960,492 (+)	NCBI
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cataract 9 multiple types (ISO)

developmental and epileptic encephalopathy 30 (ISO)

homocystinuria (ISO)

primary ciliary dyskinesia (ISO)

progressive myoclonus epilepsy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2,4-dinitrotoluene (EXP)

2-palmitoylglycerol (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (EXP,ISO)

5-fluorouracil (ISO)

5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole (EXP)

6-propyl-2-thiouracil (EXP)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amiodarone (EXP)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

azoxystrobin (ISO)

benzbromarone (EXP)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

Brodifacoum (EXP)

cadmium dichloride (EXP)

cannabidiol (ISO)

captan (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

clofibrate (EXP,ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

corosolic acid (ISO)

coumarin (ISO)

deguelin (ISO)

deoxynivalenol (ISO)

Dibutyl phosphate (ISO)

epoxiconazole (ISO)

fenthion (ISO)

finasteride (EXP)

flavonoids (EXP)

flutamide (ISO)

folic acid (ISO)

folpet (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

L-ethionine (EXP)

lead(0) (ISO)

lipopolysaccharide (ISO)

methyl methanesulfonate (ISO)

N-methyl-4-phenylpyridinium (ISO)

nefazodone (EXP)

niclosamide (ISO)

nitrates (ISO)

okadaic acid (ISO)

omeprazole (EXP)

oxybenzone (EXP)

p-toluidine (EXP)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (EXP,ISO)

pyrimidifen (ISO)

rotenone (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

sulforaphane (ISO)

sulindac (EXP)

sunitinib (ISO)

T-2 toxin (EXP)

tetrachloromethane (ISO)

thioacetamide (EXP)

thiram (ISO)

toluene (EXP)

trichloroethene (EXP)

Triptolide (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial ATP synthesis coupled electron transport (IBA,ISO)

Cellular Component

membrane (IEA)

mitochondrial inner membrane (IEA,ISO)

mitochondrion (IEA,ISO)

respiratory chain complex I (IBA,IEA,ISO,ISS)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Alzheimer's disease pathway (IEA)

forkhead class A signaling pathway (ISO)

Huntington's disease pathway (IEA)

oxidative phosphorylation pathway (IEA)

Parkinson's disease pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Molecular cloning and characterization of a novel mitochondrial phosphoprotein, MIPP65, from rat liver.	Kitagawa M, etal., Exp Cell Res 1997 Aug 25;235(1):71-8.
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:12611891	PMID:14651853	PMID:15489334	PMID:18614015	PMID:20833797	PMID:22658674	PMID:22681889	PMID:24746669	PMID:25002582	PMID:26686297	PMID:27626371
PMID:27940020	PMID:28844695	PMID:35352799

Genomics

Comparative Map Data

Ndufv3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	9,613,786 - 9,622,941 (+)	NCBI		GRCr8
GRCr8 Ensembl	20	9,613,786 - 9,624,381 (+)	Ensembl		GRCr8 Ensembl
GRCr8 Ensembl	13	48,468,224 - 48,488,847 (-)	Ensembl		GRCr8 Ensembl
mRatBN7.2	20	9,612,462 - 9,621,622 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	45,916,312 - 45,916,638 (-)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	20	9,612,431 - 9,623,074 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	10,313,049 - 10,322,444 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	9,674,226 - 9,683,620 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	10,144,578 - 10,153,725 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	10,265,826 - 10,275,298 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	10,265,806 - 10,275,304 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	12,455,139 - 12,464,611 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	9,951,109 - 9,960,265 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	11,126,335 - 11,135,486 (+)	NCBI		Celera
RGSC_v3.1	20	9,951,416 - 9,960,492 (+)	NCBI
Cytogenetic Map	20	p12	NCBI

NDUFV3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	42,893,309 - 42,913,299 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	42,879,644 - 42,913,304 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	21	44,313,419 - 44,333,409 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	43,186,447 - 43,202,842 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	21	43,186,446 - 43,202,841	NCBI
Celera	21	29,462,954 - 29,479,344 (+)	NCBI		Celera
Cytogenetic Map	21	q22.3	NCBI
HuRef	21	29,728,932 - 29,766,787 (+)	NCBI		HuRef
CHM1_1	21	43,874,271 - 43,890,607 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	21	41,281,682 - 41,301,785 (+)	NCBI		T2T-CHM13v2.0

Ndufv3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	31,739,089 - 31,750,300 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	31,739,089 - 31,750,305 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	31,520,115 - 31,531,326 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	31,520,115 - 31,531,331 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	31,657,060 - 31,668,271 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	31,248,868 - 31,260,036 (+)	NCBI		MGSCv36	mm8
Celera	17	32,437,759 - 32,448,956 (+)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI
cM Map	17	16.64	NCBI

Ndufv3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	39,026,057 - 39,039,347 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	39,029,943 - 39,039,425 (-)	NCBI	ChiLan1.0	ChiLan1.0

NDUFV3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	38,954,362 - 38,970,144 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	33,806,294 - 33,824,964 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	29,205,714 - 29,222,057 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	42,516,295 - 42,531,750 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	42,516,295 - 42,531,750 (+)	Ensembl	panpan1.1		panPan2

NDUFV3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	37,118,201 - 37,131,035 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	37,118,247 - 37,130,810 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	36,268,697 - 36,281,543 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	36,659,624 - 36,672,473 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	31	36,527,744 - 36,540,579 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	36,507,988 - 36,520,853 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	37,004,390 - 37,017,234 (+)	NCBI		UU_Cfam_GSD_1.0

Ndufv3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	36,353,922 - 36,365,099 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	1,102,694 - 1,113,978 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	1,102,724 - 1,113,856 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NDUFV3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	13	206,111,337 - 206,123,987 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	216,572,830 - 216,576,885 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NDUFV3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	86,750,630 - 86,759,744 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	86,750,648 - 86,759,826 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	14,722,078 - 14,736,492 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ndufv3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624745	27,777,507 - 27,786,939 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ndufv3
55 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	127
Count of miRNA genes:	93
Interacting mature miRNAs:	103
Transcripts:	ENSRNOT00000001564, ENSRNOT00000030926
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8043920	29865039	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24164241	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	1	27341128	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29193376	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29193376	Rat
1581577	Pur15	Proteinuria QTL 15	4.38	0.0002	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	20	8043920	15089182	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	1	26925056	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
7387283	Uae44	Urinary albumin excretion QTL 44		0.1712	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	20	1	26128279	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
1331772	Cdexp2	CD45RC expression in CD8 T cells QTL 2	5.7		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	20	3626323	10078622	Rat
631265	Iresp1	Immunoglobin response QTL1	8.3		blood anti-double stranded DNA antibody amount (VT:0004762)	serum anti-DNA antibody level (CMO:0001533)	20	9041099	11115921	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29193376	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29193376	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29193376	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1	14100378	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat

Markers in Region

RH129486

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	9,621,420 - 9,621,604 (+)	MAPPER	mRatBN7.2
mRatBN7.2	13	45,916,257 - 45,916,441 (-)	MAPPER	mRatBN7.2
mRatBN7.2	13	45,916,257 - 45,916,441 (+)	MAPPER	mRatBN7.2
mRatBN7.2	20	9,621,420 - 9,621,604 (-)	MAPPER	mRatBN7.2
Rnor_6.0	20	10,275,097 - 10,275,280	NCBI	Rnor6.0
Rnor_6.0	13	51,297,241 - 51,297,424	NCBI	Rnor6.0
Rnor_5.0	13	56,353,905 - 56,354,088	UniSTS	Rnor5.0
Rnor_5.0	20	12,464,410 - 12,464,593	UniSTS	Rnor5.0
RGSC_v3.4	13	47,416,575 - 47,416,758	UniSTS	RGSC3.4
RGSC_v3.4	20	9,960,064 - 9,960,247	UniSTS	RGSC3.4
Celera	20	11,135,285 - 11,135,468	UniSTS
Celera	13	46,244,064 - 46,244,247	UniSTS
Cytogenetic Map	13	q13	UniSTS
Cytogenetic Map	20	p12	UniSTS

RH129888

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	45,916,291 - 45,916,488 (+)	MAPPER	mRatBN7.2
mRatBN7.2	20	9,621,393 - 9,621,570 (-)	MAPPER	mRatBN7.2
Rnor_6.0	13	51,297,275 - 51,297,471	NCBI	Rnor6.0
Rnor_5.0	13	56,353,939 - 56,354,135	UniSTS	Rnor5.0
RGSC_v3.4	13	47,416,609 - 47,416,805	UniSTS	RGSC3.4
Celera	13	46,244,098 - 46,244,294	UniSTS
Cytogenetic Map	13	q13	UniSTS
Cytogenetic Map	20	p12	UniSTS

RH139157

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	9,618,167 - 9,618,287 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	10,271,846 - 10,271,965	NCBI	Rnor6.0
Rnor_5.0	20	12,461,159 - 12,461,278	UniSTS	Rnor5.0
RGSC_v3.4	20	9,956,813 - 9,956,932	UniSTS	RGSC3.4
Celera	20	11,132,034 - 11,132,153	UniSTS
RH 3.4 Map	20	130.73	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	18	96	210	166	163	107	45	107	10	406	186	11	173	86	113	56	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001101011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_022607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB000098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC059134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB608313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK365764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV725422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001564 ⟹ ENSRNOP00000001564

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	9,613,790 - 9,624,381 (+)	Ensembl
mRatBN7.2 Ensembl	20	9,612,449 - 9,621,622 (+)	Ensembl
Rnor_6.0 Ensembl	20	10,265,806 - 10,275,304 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000030926 ⟹ ENSRNOP00000038094

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	48,468,252 - 48,483,260 (-)	Ensembl
mRatBN7.2 Ensembl	13	45,916,312 - 45,916,638 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086272 ⟹ ENSRNOP00000073627

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	9,613,786 - 9,618,398 (+)	Ensembl
mRatBN7.2 Ensembl	20	9,612,431 - 9,617,077 (+)	Ensembl
Rnor_6.0 Ensembl	20	10,265,826 - 10,275,298 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098355 ⟹ ENSRNOP00000084950

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	9,613,834 - 9,624,381 (+)	Ensembl
mRatBN7.2 Ensembl	20	9,612,431 - 9,623,074 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106384 ⟹ ENSRNOP00000092722

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	9,614,389 - 9,624,381 (+)	Ensembl
mRatBN7.2 Ensembl	20	9,612,507 - 9,621,617 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117823 ⟹ ENSRNOP00000090547

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	9,616,768 - 9,621,622 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000148967 ⟹ ENSRNOP00000110610

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	48,468,252 - 48,483,903 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000156825 ⟹ ENSRNOP00000112031

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	48,468,224 - 48,488,328 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000159791 ⟹ ENSRNOP00000101412

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	48,468,235 - 48,488,847 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000169461 ⟹ ENSRNOP00000110869

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	48,468,247 - 48,487,658 (-)	Ensembl

RefSeq Acc Id:

NM_001101011 ⟹ NP_001094481

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	9,613,786 - 9,622,941 (+)	NCBI
mRatBN7.2	20	9,612,462 - 9,621,622 (+)	NCBI
Rnor_6.0	20	10,265,826 - 10,275,298 (+)	NCBI
Rnor_5.0	20	12,455,139 - 12,464,611 (+)	NCBI
RGSC_v3.4	20	9,951,109 - 9,960,265 (+)	RGD
Celera	20	11,126,335 - 11,135,486 (+)	RGD

Sequence:

show sequence

ACGTGACGCGGGGCCGAGCCTCGGGTTGTGCGGGTGCACGCTCAGGTTACGTACCTAGGTGCGA
CCTCGGCGCTGGGCGTCTGTACCATGGCGGTCTCTCTCCTGCTGCGGGGAGGACGAATCCGGGC
GCTGAAGGCTGCCCTTCTCGAGGCAAAGGTGTTCCGAGGAGAACTGGCTTCTACAGTGCCCCTG
TCTACAGAGTCCGAGAATAATAAAAAGGCGGCAGGACCAACTAGCAAGACGGAAAGTGTGTTCA
AAGAGCCCACACTGGTTCCCGAGTCGAGTGACACCACCACCTACAAGAACCTGCAGCATCATGA
GTACAACGCATTCACCTTCCTAGACCTGAACCTGGACCTCTCCAAGTTCAGGCTGCCACAGCCG
TCTTCGGGACGAGAGTCGCCCCGGCACTGAACTCAACTCAGGGTAGACCCCCGTGTGGTCCCTT
GAATTCTTGCCTGTGAGAATAAAAGTCAGAGGCACAAA

hide sequence

RefSeq Acc Id:

NM_022607 ⟹ NP_072129

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	9,613,786 - 9,622,941 (+)	NCBI
mRatBN7.2	20	9,612,462 - 9,621,622 (+)	NCBI
Rnor_6.0	20	10,265,826 - 10,275,298 (+)	NCBI
Rnor_5.0	20	12,455,139 - 12,464,611 (+)	NCBI
RGSC_v3.4	20	9,951,109 - 9,960,265 (+)	RGD
Celera	20	11,126,335 - 11,135,486 (+)	RGD

Sequence:

show sequence

ACGTGACGCGGGGCCGAGCCTCGGGTTGTGCGGGTGCACGCTCAGGTTACGTACCTAGGTGCGA
CCTCGGCGCTGGGCGTCTGTACCATGGCGGTCTCTCTCCTGCTGCGGGGAGGACGAATCCGGGC
GCTGAAGGCTGCCCTTCTCGAGGCAAAGGTGTTCCGAGGAGAACTGGCTTCTACAGTGCCCCTG
TCTACAGAGTCCGAGAATAATAAAAAGGCGGCAGGACCAACTAGCAAGACGGAAAGTGTGTTCA
AAGATGTGGTGGGAGCAGAGGAGAGGGCCAAGCTCCTAGACACTCACACAGCAGCGGCACTGTC
CAAAAGCTCCCCTCCACCCAGTTCTTACCCATCAGTGGAGAACACAGGTGGGGCTGTCGCAGGC
CTGCCGCTCACAGACTTGTCAAGAAAGACTTTGGTAGCGTTTCCTCAGAAAGTTACGCCTCCAC
CGCATGCCTGGGCTTCTGACTCGGAGGCTCGGCGGCATGTCCAGAAAGTGACGAAAGATTCATC
TTCATCTTCCTCATCCAGCTCCTCAGATTCAGACTCTGATGGGGAGGAACATGGCTCCGACATT
GGTCCCCGAGTGGCAAGCAAAAGCAAGGCAGGGTTTTCCAAACCTGAGGCTTCTCGTCCCTCGA
AGAACGGAGCCCCTAAGATCACAGTTTTTGCAAAAGAGAAGGCCAAGGTGCAGAAGCCACACAC
AGATGTCACCTACCCAGAGAAGCCCCTGCAGCCTAAGAAGAAAGGGACTTTCACCAAGCCTGTA
GAAGATAGTAAAGAAACCAGGTCCAAGCTCATGACATCCAAGCCACAGTCCAGTGAGGTTTTGG
AGCAAAAAATGAAGGAAAAACAGCACCAGGGAAAACGGAGACCAGACAAGACAGGAAAGGAAAG
CACAGAGCTGTTTGAAGCTGAAGGAATTTTACCCGGCCACAGGAAAGCCAGAGTTTCCACACAG
CCCACAACCGGAACACAAGAGGCCAGCGCAGAACTCCGGCCAGCCGCTGCCCCCGAGTCGGGAG
CTAGACAGGAAGCCAAAGGGCCAGAGCTCGAATGGAAGACCGCTTCTCCCCTGGTCAGAAAAGA
AAGCCTGGAGAAGCAGGTGCCAGAAGGGAGCTTCCAGGCGGAGGAGGAGACCTCAGGAGATCAG
ACACTAGGGAGATATTCGAAGACAGTTCCTGTTGAGGAGAAAAATACCTTTGGAGAGAGAGCTG
GACCACAACTGGAGGGGACGTTCCAGGCGCCAGCCGGCGAAGCCCCGCCCACTGATGCAGGCCC
ACCCCAGGAAGCCCCAGGCGACACACAGGAGCCCACACTGGTTCCCGAGTCGAGTGACACCACC
ACCTACAAGAACCTGCAGCATCATGAGTACAACGCATTCACCTTCCTAGACCTGAACCTGGACC
TCTCCAAGTTCAGGCTGCCACAGCCGTCTTCGGGACGAGAGTCGCCCCGGCACTGAACTCAACT
CAGGGTAGACCCCCGTGTGGTCCCTTGAATTCTTGCCTGTGAGAATAAAAGTCAGAGGCACAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001094481	(Get FASTA)	NCBI Sequence Viewer
	NP_072129	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH59134	(Get FASTA)	NCBI Sequence Viewer
	BAA24351	(Get FASTA)	NCBI Sequence Viewer
	EDL97015	(Get FASTA)	NCBI Sequence Viewer
	EDL97016	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001564
	ENSRNOP00000038094.1
	ENSRNOP00000084950
	ENSRNOP00000084950.1
GenBank Protein	Q6PCU8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_072129 ⟸ NM_022607
- Peptide Label:	isoform 1
- UniProtKB:	G3V644 (UniProtKB/TrEMBL), O54755 (UniProtKB/TrEMBL), A6JJZ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVSLLLRGGRIRALKAALLEAKVFRGELASTVPLSTESENNKKAAGPTSKTESVFKDVVGAEE RAKLLDTHTAAALSKSSPPPSSYPSVENTGGAVAGLPLTDLSRKTLVAFPQKVTPPPHAWASDS EARRHVQKVTKDSSSSSSSSSSDSDSDGEEHGSDIGPRVASKSKAGFSKPEASRPSKNGAPKIT VFAKEKAKVQKPHTDVTYPEKPLQPKKKGTFTKPVEDSKETRSKLMTSKPQSSEVLEQKMKEKQ HQGKRRPDKTGKESTELFEAEGILPGHRKARVSTQPTTGTQEASAELRPAAAPESGARQEAKGP ELEWKTASPLVRKESLEKQVPEGSFQAEEETSGDQTLGRYSKTVPVEEKNTFGERAGPQLEGTF QAPAGEAPPTDAGPPQEAPGDTQEPTLVPESSDTTTYKNLQHHEYNAFTFLDLNLDLSKFRLPQ PSSGRESPRH hide sequence

RefSeq Acc Id:	NP_001094481 ⟸ NM_001101011
- Peptide Label:	isoform 2
- UniProtKB:	Q6PCU8 (UniProtKB/Swiss-Prot), A6JK00 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVSLLLRGGRIRALKAALLEAKVFRGELASTVPLSTESENNKKAAGPTSKTESVFKEPTLVPE SSDTTTYKNLQHHEYNAFTFLDLNLDLSKFRLPQPSSGRESPRH hide sequence

Ensembl Acc Id:

ENSRNOP00000001564 ⟸ ENSRNOT00000001564

Ensembl Acc Id:

ENSRNOP00000073627 ⟸ ENSRNOT00000086272

Ensembl Acc Id:

ENSRNOP00000092722 ⟸ ENSRNOT00000106384

Ensembl Acc Id:

ENSRNOP00000090547 ⟸ ENSRNOT00000117823

Ensembl Acc Id:

ENSRNOP00000084950 ⟸ ENSRNOT00000098355

Ensembl Acc Id:

ENSRNOP00000038094 ⟸ ENSRNOT00000030926

Ensembl Acc Id:

ENSRNOP00000101412 ⟸ ENSRNOT00000159791

Ensembl Acc Id:

ENSRNOP00000110869 ⟸ ENSRNOT00000169461

Ensembl Acc Id:

ENSRNOP00000110610 ⟸ ENSRNOT00000148967

Ensembl Acc Id:

ENSRNOP00000112031 ⟸ ENSRNOT00000156825

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6PCU8-F1-model_v2	AlphaFold	Q6PCU8	1-108	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701476

Promoter ID:

EPDNEW_R12000

Type:

initiation region

Name:

Ndufv3_1

Description:

NADH:ubiquinone oxidoreductase subunit V3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	10,265,875 - 10,265,935	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621020	AgrOrtholog
BioCyc Gene	G2FUF-4310	BioCyc
Ensembl Genes	ENSRNOG00000001182	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00000027593	Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000001564	ENTREZGENE
	ENSRNOT00000030926.2	UniProtKB/Swiss-Prot
	ENSRNOT00000098355	ENTREZGENE
	ENSRNOT00000098355.1	UniProtKB/Swiss-Prot
InterPro	NDUFV3	UniProtKB/Swiss-Prot
KEGG Report	rno:64539	UniProtKB/Swiss-Prot
NCBI Gene	64539	ENTREZGENE
PANTHER	NADH DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN 3, MITOCHONDRIAL	UniProtKB/Swiss-Prot
	PTHR17117	UniProtKB/Swiss-Prot
Pfam	NDUFV3	UniProtKB/Swiss-Prot
PhenoGen	Ndufv3	PhenoGen
RatGTEx	ENSRNOG00000001182	RatGTEx
	ENSRNOG00000027593	RatGTEx
UniProt	A0A8I6AEG4_RAT	UniProtKB/TrEMBL
	A0A8I6ANH1_RAT	UniProtKB/TrEMBL
	A0A8L2R7R6_RAT	UniProtKB/TrEMBL
	A6JJZ9	ENTREZGENE, UniProtKB/TrEMBL
	A6JK00	ENTREZGENE, UniProtKB/TrEMBL
	G3V644	ENTREZGENE, UniProtKB/TrEMBL
	NDUV3_RAT	UniProtKB/Swiss-Prot
	O54755	ENTREZGENE, UniProtKB/TrEMBL
	Q6PCU8	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-18	Ndufv3	NADH:ubiquinone oxidoreductase subunit V3	Ndufv3	NADH dehydrogenase (ubiquinone) flavoprotein 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-01-23	Ndufv3	NADH dehydrogenase (ubiquinone) flavoprotein 3	Ndufv3l	NADH dehydrogenase (ubiquinone) flavoprotein 3-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	Ndufv3l	NADH dehydrogenase (ubiquinone) flavoprotein 3-like	Mipp65	MIPP65 protein	Symbol and Name updated	1299863	APPROVED
2002-08-07	Mipp65	MIPP65 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in all tissues tested	633270
gene_homology	contains two regions with homology to mitochondrial NADH-ubiquinone oxidoreductase 9-kDa subunit precursor	633270

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)