Ndufv3 (NADH:ubiquinone oxidoreductase subunit V3) - Rat Genome Database

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Gene: Ndufv3 (NADH:ubiquinone oxidoreductase subunit V3) Rattus norvegicus
Analyze
Symbol: Ndufv3 (Ensembl: Ndufv3-ps1)
Name: NADH:ubiquinone oxidoreductase subunit V3 (Ensembl:NADH:ubiquinone oxidoreductase subunit V3, pseudogene 1)
RGD ID: 621020
Description: Predicted to be involved in mitochondrial ATP synthesis coupled electron transport. Predicted to be located in mitochondrion. Predicted to be part of respiratory chain complex I. Predicted to be active in mitochondrial inner membrane. Orthologous to human NDUFV3 (NADH:ubiquinone oxidoreductase subunit V3); PARTICIPATES IN forkhead class A signaling pathway; Alzheimer's disease pathway; Huntington's disease pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CI-9kD; complex I-9kD; MGC72817; Mipp65; NADH dehydrogenase (ubiquinone) flavoprotein 3; NADH dehydrogenase (ubiquinone) flavoprotein 3-like; NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial; NADH-ubiquinone oxidoreductase 9 kDa subunit; Ndufv3l
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Ndufv3-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8209,613,786 - 9,622,941 (+)NCBIGRCr8
GRCr8 Ensembl209,613,786 - 9,624,381 (+)EnsemblGRCr8 Ensembl
GRCr8 Ensembl1348,468,224 - 48,488,847 (-)EnsemblGRCr8 Ensembl
mRatBN7.2209,612,462 - 9,621,622 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,916,312 - 45,916,638 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl209,612,431 - 9,623,074 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2010,313,049 - 10,322,444 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0209,674,226 - 9,683,620 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02010,144,578 - 10,153,725 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02010,265,826 - 10,275,298 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2010,265,806 - 10,275,304 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02012,455,139 - 12,464,611 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4209,951,109 - 9,960,265 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2011,126,335 - 11,135,486 (+)NCBICelera
RGSC_v3.1209,951,416 - 9,960,492 (+)NCBI
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-dinitrotoluene  (EXP)
2-palmitoylglycerol  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
5-fluorouracil  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
azoxystrobin  (ISO)
benzbromarone  (EXP)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
Brodifacoum  (EXP)
cadmium dichloride  (EXP)
cannabidiol  (ISO)
captan  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibrate  (EXP,ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
corosolic acid  (ISO)
coumarin  (ISO)
deguelin  (ISO)
deoxynivalenol  (ISO)
Dibutyl phosphate  (ISO)
epoxiconazole  (ISO)
fenthion  (ISO)
finasteride  (EXP)
flavonoids  (EXP)
flutamide  (ISO)
folic acid  (ISO)
folpet  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
GSK-J4  (ISO)
L-ethionine  (EXP)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
methyl methanesulfonate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (EXP)
niclosamide  (ISO)
nitrates  (ISO)
okadaic acid  (ISO)
omeprazole  (EXP)
oxybenzone  (EXP)
p-toluidine  (EXP)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (EXP,ISO)
pyrimidifen  (ISO)
rotenone  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sulforaphane  (ISO)
sulindac  (EXP)
sunitinib  (ISO)
T-2 toxin  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
toluene  (EXP)
trichloroethene  (EXP)
Triptolide  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Molecular cloning and characterization of a novel mitochondrial phosphoprotein, MIPP65, from rat liver. Kitagawa M, etal., Exp Cell Res 1997 Aug 25;235(1):71-8.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12611891   PMID:14651853   PMID:15489334   PMID:18614015   PMID:20833797   PMID:22658674   PMID:22681889   PMID:24746669   PMID:25002582   PMID:26686297   PMID:27626371  
PMID:27940020   PMID:28844695   PMID:35352799  


Genomics

Comparative Map Data
Ndufv3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8209,613,786 - 9,622,941 (+)NCBIGRCr8
GRCr8 Ensembl209,613,786 - 9,624,381 (+)EnsemblGRCr8 Ensembl
GRCr8 Ensembl1348,468,224 - 48,488,847 (-)EnsemblGRCr8 Ensembl
mRatBN7.2209,612,462 - 9,621,622 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,916,312 - 45,916,638 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl209,612,431 - 9,623,074 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2010,313,049 - 10,322,444 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0209,674,226 - 9,683,620 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02010,144,578 - 10,153,725 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02010,265,826 - 10,275,298 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2010,265,806 - 10,275,304 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02012,455,139 - 12,464,611 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4209,951,109 - 9,960,265 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2011,126,335 - 11,135,486 (+)NCBICelera
RGSC_v3.1209,951,416 - 9,960,492 (+)NCBI
Cytogenetic Map20p12NCBI
NDUFV3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382142,893,309 - 42,913,299 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2142,879,644 - 42,913,304 (+)EnsemblGRCh38hg38GRCh38
GRCh372144,313,419 - 44,333,409 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362143,186,447 - 43,202,842 (+)NCBINCBI36Build 36hg18NCBI36
Build 342143,186,446 - 43,202,841NCBI
Celera2129,462,954 - 29,479,344 (+)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2129,728,932 - 29,766,787 (+)NCBIHuRef
CHM1_12143,874,271 - 43,890,607 (+)NCBICHM1_1
T2T-CHM13v2.02141,281,682 - 41,301,785 (+)NCBIT2T-CHM13v2.0
Ndufv3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391731,739,089 - 31,750,300 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1731,739,089 - 31,750,305 (+)EnsemblGRCm39 Ensembl
GRCm381731,520,115 - 31,531,326 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1731,520,115 - 31,531,331 (+)EnsemblGRCm38mm10GRCm38
MGSCv371731,657,060 - 31,668,271 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361731,248,868 - 31,260,036 (+)NCBIMGSCv36mm8
Celera1732,437,759 - 32,448,956 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1716.64NCBI
Ndufv3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540739,026,057 - 39,039,347 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540739,029,943 - 39,039,425 (-)NCBIChiLan1.0ChiLan1.0
NDUFV3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22238,954,362 - 38,970,144 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12133,806,294 - 33,824,964 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02129,205,714 - 29,222,057 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12142,516,295 - 42,531,750 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2142,516,295 - 42,531,750 (+)Ensemblpanpan1.1panPan2
NDUFV3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13137,118,201 - 37,131,035 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3137,118,247 - 37,130,810 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3136,268,697 - 36,281,543 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03136,659,624 - 36,672,473 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13136,527,744 - 36,540,579 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03136,507,988 - 36,520,853 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03137,004,390 - 37,017,234 (+)NCBIUU_Cfam_GSD_1.0
Ndufv3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497136,353,922 - 36,365,099 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365001,102,694 - 1,113,978 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365001,102,724 - 1,113,856 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFV3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.113206,111,337 - 206,123,987 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213216,572,830 - 216,576,885 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFV3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1286,750,630 - 86,759,744 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl286,750,648 - 86,759,826 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605414,722,078 - 14,736,492 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufv3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474527,777,507 - 27,786,939 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ndufv3
55 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:127
Count of miRNA genes:93
Interacting mature miRNAs:103
Transcripts:ENSRNOT00000001564, ENSRNOT00000030926
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804392029865039Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
1581577Pur15Proteinuria QTL 154.380.0002urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)20804392015089182Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362632310078622Rat
631265Iresp1Immunoglobin response QTL18.3blood anti-double stranded DNA antibody amount (VT:0004762)serum anti-DNA antibody level (CMO:0001533)20904109911115921Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
RH129486  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2209,621,420 - 9,621,604 (+)MAPPERmRatBN7.2
mRatBN7.21345,916,257 - 45,916,441 (-)MAPPERmRatBN7.2
mRatBN7.21345,916,257 - 45,916,441 (+)MAPPERmRatBN7.2
mRatBN7.2209,621,420 - 9,621,604 (-)MAPPERmRatBN7.2
Rnor_6.02010,275,097 - 10,275,280NCBIRnor6.0
Rnor_6.01351,297,241 - 51,297,424NCBIRnor6.0
Rnor_5.01356,353,905 - 56,354,088UniSTSRnor5.0
Rnor_5.02012,464,410 - 12,464,593UniSTSRnor5.0
RGSC_v3.41347,416,575 - 47,416,758UniSTSRGSC3.4
RGSC_v3.4209,960,064 - 9,960,247UniSTSRGSC3.4
Celera2011,135,285 - 11,135,468UniSTS
Celera1346,244,064 - 46,244,247UniSTS
Cytogenetic Map13q13UniSTS
Cytogenetic Map20p12UniSTS
RH129888  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,916,291 - 45,916,488 (+)MAPPERmRatBN7.2
mRatBN7.2209,621,393 - 9,621,570 (-)MAPPERmRatBN7.2
Rnor_6.01351,297,275 - 51,297,471NCBIRnor6.0
Rnor_5.01356,353,939 - 56,354,135UniSTSRnor5.0
RGSC_v3.41347,416,609 - 47,416,805UniSTSRGSC3.4
Celera1346,244,098 - 46,244,294UniSTS
Cytogenetic Map13q13UniSTS
Cytogenetic Map20p12UniSTS
RH139157  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2209,618,167 - 9,618,287 (+)MAPPERmRatBN7.2
Rnor_6.02010,271,846 - 10,271,965NCBIRnor6.0
Rnor_5.02012,461,159 - 12,461,278UniSTSRnor5.0
RGSC_v3.4209,956,813 - 9,956,932UniSTSRGSC3.4
Celera2011,132,034 - 11,132,153UniSTS
RH 3.4 Map20130.73UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 18 96 210 166 163 107 45 107 10 406 186 11 173 86 113 56 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000001564   ⟹   ENSRNOP00000001564
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl209,613,790 - 9,624,381 (+)Ensembl
mRatBN7.2 Ensembl209,612,449 - 9,621,622 (+)Ensembl
Rnor_6.0 Ensembl2010,265,806 - 10,275,304 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000030926   ⟹   ENSRNOP00000038094
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1348,468,252 - 48,483,260 (-)Ensembl
mRatBN7.2 Ensembl1345,916,312 - 45,916,638 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086272   ⟹   ENSRNOP00000073627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl209,613,786 - 9,618,398 (+)Ensembl
mRatBN7.2 Ensembl209,612,431 - 9,617,077 (+)Ensembl
Rnor_6.0 Ensembl2010,265,826 - 10,275,298 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098355   ⟹   ENSRNOP00000084950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl209,613,834 - 9,624,381 (+)Ensembl
mRatBN7.2 Ensembl209,612,431 - 9,623,074 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106384   ⟹   ENSRNOP00000092722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl209,614,389 - 9,624,381 (+)Ensembl
mRatBN7.2 Ensembl209,612,507 - 9,621,617 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117823   ⟹   ENSRNOP00000090547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl209,616,768 - 9,621,622 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000148967   ⟹   ENSRNOP00000110610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1348,468,252 - 48,483,903 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000156825   ⟹   ENSRNOP00000112031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1348,468,224 - 48,488,328 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000159791   ⟹   ENSRNOP00000101412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1348,468,235 - 48,488,847 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000169461   ⟹   ENSRNOP00000110869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1348,468,247 - 48,487,658 (-)Ensembl
RefSeq Acc Id: NM_001101011   ⟹   NP_001094481
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8209,613,786 - 9,622,941 (+)NCBI
mRatBN7.2209,612,462 - 9,621,622 (+)NCBI
Rnor_6.02010,265,826 - 10,275,298 (+)NCBI
Rnor_5.02012,455,139 - 12,464,611 (+)NCBI
RGSC_v3.4209,951,109 - 9,960,265 (+)RGD
Celera2011,126,335 - 11,135,486 (+)RGD
Sequence:
RefSeq Acc Id: NM_022607   ⟹   NP_072129
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8209,613,786 - 9,622,941 (+)NCBI
mRatBN7.2209,612,462 - 9,621,622 (+)NCBI
Rnor_6.02010,265,826 - 10,275,298 (+)NCBI
Rnor_5.02012,455,139 - 12,464,611 (+)NCBI
RGSC_v3.4209,951,109 - 9,960,265 (+)RGD
Celera2011,126,335 - 11,135,486 (+)RGD
Sequence:
RefSeq Acc Id: NP_072129   ⟸   NM_022607
- Peptide Label: isoform 1
- UniProtKB: G3V644 (UniProtKB/TrEMBL),   O54755 (UniProtKB/TrEMBL),   A6JJZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001094481   ⟸   NM_001101011
- Peptide Label: isoform 2
- UniProtKB: Q6PCU8 (UniProtKB/Swiss-Prot),   A6JK00 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000001564   ⟸   ENSRNOT00000001564
Ensembl Acc Id: ENSRNOP00000073627   ⟸   ENSRNOT00000086272
Ensembl Acc Id: ENSRNOP00000092722   ⟸   ENSRNOT00000106384
Ensembl Acc Id: ENSRNOP00000090547   ⟸   ENSRNOT00000117823
Ensembl Acc Id: ENSRNOP00000084950   ⟸   ENSRNOT00000098355
Ensembl Acc Id: ENSRNOP00000038094   ⟸   ENSRNOT00000030926
Ensembl Acc Id: ENSRNOP00000101412   ⟸   ENSRNOT00000159791
Ensembl Acc Id: ENSRNOP00000110869   ⟸   ENSRNOT00000169461
Ensembl Acc Id: ENSRNOP00000110610   ⟸   ENSRNOT00000148967
Ensembl Acc Id: ENSRNOP00000112031   ⟸   ENSRNOT00000156825

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PCU8-F1-model_v2 AlphaFold Q6PCU8 1-108 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701476
Promoter ID:EPDNEW_R12000
Type:initiation region
Name:Ndufv3_1
Description:NADH:ubiquinone oxidoreductase subunit V3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02010,265,875 - 10,265,935EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621020 AgrOrtholog
BioCyc Gene G2FUF-4310 BioCyc
Ensembl Genes ENSRNOG00000001182 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000027593 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000001564 ENTREZGENE
  ENSRNOT00000030926.2 UniProtKB/Swiss-Prot
  ENSRNOT00000098355 ENTREZGENE
  ENSRNOT00000098355.1 UniProtKB/Swiss-Prot
InterPro NDUFV3 UniProtKB/Swiss-Prot
KEGG Report rno:64539 UniProtKB/Swiss-Prot
NCBI Gene 64539 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN 3, MITOCHONDRIAL UniProtKB/Swiss-Prot
  PTHR17117 UniProtKB/Swiss-Prot
Pfam NDUFV3 UniProtKB/Swiss-Prot
PhenoGen Ndufv3 PhenoGen
RatGTEx ENSRNOG00000001182 RatGTEx
  ENSRNOG00000027593 RatGTEx
UniProt A0A8I6AEG4_RAT UniProtKB/TrEMBL
  A0A8I6ANH1_RAT UniProtKB/TrEMBL
  A0A8L2R7R6_RAT UniProtKB/TrEMBL
  A6JJZ9 ENTREZGENE, UniProtKB/TrEMBL
  A6JK00 ENTREZGENE, UniProtKB/TrEMBL
  G3V644 ENTREZGENE, UniProtKB/TrEMBL
  NDUV3_RAT UniProtKB/Swiss-Prot
  O54755 ENTREZGENE, UniProtKB/TrEMBL
  Q6PCU8 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-18 Ndufv3  NADH:ubiquinone oxidoreductase subunit V3  Ndufv3  NADH dehydrogenase (ubiquinone) flavoprotein 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-01-23 Ndufv3  NADH dehydrogenase (ubiquinone) flavoprotein 3  Ndufv3l  NADH dehydrogenase (ubiquinone) flavoprotein 3-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Ndufv3l  NADH dehydrogenase (ubiquinone) flavoprotein 3-like  Mipp65  MIPP65 protein  Symbol and Name updated 1299863 APPROVED
2002-08-07 Mipp65  MIPP65 protein      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in all tissues tested 633270
gene_homology contains two regions with homology to mitochondrial NADH-ubiquinone oxidoreductase 9-kDa subunit precursor 633270