Myl1_v1 (myosin, light chain 1, variant 1) - Rat Genome Database

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Gene: Myl1_v1 (myosin, light chain 1, variant 1) Rattus norvegicus
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Symbol: Myl1_v1
Name: myosin, light chain 1, variant 1
RGD ID: 620884
Description: Predicted to be a structural constituent of muscle.
Type: protein-coding  of Myl1  
Previously known as: Mlc1; Mlc1-f; myosin light chains (MLC1-f) gene; myosin, light polypeptide 1, variant 1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
RGSC_v3.1965,863,967 - 65,864,508 (-)NCBI


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
2. Fast skeletal muscle myosin light chains 1 and 3 are produced from a single gene by a combined process of differential RNA transcription and splicing. Periasamy M, etal., J Biol Chem 1984 Nov 10;259(21):13595-604.
3. GOA pipeline RGD automated data pipeline
4. Myosin light-chain 1 and 3 gene has two structurally distinct and differentially regulated promoters evolving at different rates. Strehler EE, etal., Mol Cell Biol 1985 Nov;5(11):3168-82.
Additional References at PubMed
PMID:16160062  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001077656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide M12022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Protein Sequences
Protein RefSeqs NP_001071124 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000017838.3
  ENSRNOP00055014115
  ENSRNOP00060026714
  ENSRNOP00065036973
Protein Domains
EF-hand

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000013262 UniProtKB/Swiss-Prot
  ENSRNOG00055010340 UniProtKB/Swiss-Prot
  ENSRNOG00060018855 UniProtKB/Swiss-Prot
  ENSRNOG00065026114 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000017838.7 UniProtKB/Swiss-Prot
  ENSRNOT00055017516 UniProtKB/Swiss-Prot
  ENSRNOT00060032712 UniProtKB/Swiss-Prot
  ENSRNOT00065045090 UniProtKB/Swiss-Prot
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ca-Reg_Muscle_Contr_Cell_Proc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:56781 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene Myl1_v1
  Myl1_v1 ENTREZGENE
PANTHER MYOSIN LIGHT CHAIN 1, 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MYOSIN LIGHT CHAIN 1/3, SKELETAL MUSCLE ISOFORM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Myl1_v1 PhenoGen
PROSITE EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013262 RatGTEx
  ENSRNOG00055010340 RatGTEx
  ENSRNOG00060018855 RatGTEx
  ENSRNOG00065026114 RatGTEx
SMART EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6KFD8_RAT UniProtKB/TrEMBL
  A6KFD9_RAT UniProtKB/TrEMBL
  MYL1_RAT UniProtKB/Swiss-Prot
UniProt Secondary P02601 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-10-07 Myl1_v1  myosin, light polypeptide 1, variant 1  Mlc1  myosin light chains (MLC1-f) gene  Symbol and Name updated 1299863 APPROVED
2002-08-07 Mlc1  myosin light chains (MLC1-f) gene      Symbol and Name status set to provisional 70820 PROVISIONAL