Ccnl1 (cyclin L1) - Rat Genome Database

Name: Ccnl1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Ccnl1 (cyclin L1) Rattus norvegicus

Analyze

Symbol:

Ccnl1

Name:

cyclin L1

RGD ID:

620864

Description:

Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in regulation of RNA splicing and regulation of transcription by RNA polymerase II. Located in nuclear speck. Orthologous to human CCNL1 (cyclin L1); INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Ania-6a; Ccnl; cyclin Ania-6a; cyclin L; cyclin-L; cyclin-L1; cyclin-L1-like; LOC100909712; MGC93069

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCNL1 (cyclin L1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ccnl1 (cyclin L1)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Ccnl1 (cyclin L1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCNL1 (cyclin L1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCNL1 (cyclin L1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccnl1 (cyclin L1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCNL1 (cyclin L1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCNL1 (cyclin L1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccnl1 (cyclin L1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CCNL1 (cyclin L1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ccnl1 (cyclin L1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccnl1a (cyclin L1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG16903	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cyl-1	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ccnl1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	150,184,865 - 150,199,524 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	150,184,798 - 150,197,368 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	157,294,697 - 157,307,010 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	2	155,345,203 - 155,357,516 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	2	149,977,917 - 149,990,230 (-)	NCBI	Rnor_WKY
Rnor_6.0	2	157,747,295 - 157,759,838 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	157,747,542 - 157,759,838 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	177,110,678 - 177,122,977 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	155,757,335 - 155,769,633 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	155,707,300 - 155,719,596 (-)	NCBI
Celera	2	144,599,445 - 144,611,743 (-)	NCBI		Celera
Cytogenetic Map	2	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (EXP,ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3H-1,2-dithiole-3-thione (EXP)

4-hydroxyphenyl retinamide (ISO)

acetaldehyde (ISO)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bis(2-chloroethyl) sulfide (EXP,ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

C60 fullerene (EXP)

cadmium dichloride (EXP)

caffeine (ISO)

capsaicin (EXP)

CGP 52608 (ISO)

chlorpyrifos (EXP)

chrysene (ISO)

clozapine (EXP)

cocaine (EXP)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

D-glucose (ISO)

dibutyl phthalate (EXP)

doxorubicin (ISO)

fluoranthene (ISO)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

glucose (ISO)

glyphosate (EXP)

haloperidol (EXP)

imidacloprid (EXP)

leflunomide (ISO)

lipopolysaccharide (EXP)

methamphetamine (EXP)

methyl methanesulfonate (ISO)

methylisothiazolinone (ISO)

methylmercury chloride (ISO)

mono(2-ethyl-5-oxohexyl) phthalate (ISO)

N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine (EXP)

nefazodone (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (EXP,ISO)

potassium chromate (ISO)

rac-lactic acid (ISO)

ranitidine (EXP)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

Soman (EXP)

tamoxifen (ISO)

tetrachloromethane (ISO)

tetraphene (ISO)

thiabendazole (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

vitamin E (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of RNA splicing (ISO)

regulation of transcription by RNA polymerase II (IBA,IEA)

Cellular Component

cyclin-dependent protein kinase holoenzyme complex (ISO)

nuclear speck (IDA)

nucleus (IBA,IEA,ISO)

Molecular Function

cyclin-dependent protein serine/threonine kinase regulator activity (IBA,IEA)

protein binding (IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	A complex program of striatal gene expression induced by dopaminergic stimulation.	Berke JD, etal., J Neurosci 1998 Jul 15;18(14):5301-10.
2.	Dopamine and glutamate induce distinct striatal splice forms of Ania-6, an RNA polymerase II-associated cyclin.	Berke JD, etal., Neuron 2001 Oct 25;32(2):277-87.
3.	Identification and characterization of the CDK12/cyclin L1 complex involved in alternative splicing regulation.	Chen HH, etal., Mol Cell Biol. 2006 Apr;26(7):2736-45.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Regulation of ania-6 splice variants by distinct signaling pathways in striatal neurons.	Sgambato V, etal., J Neurochem 2003 Jul;86(1):153-64.

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:17494991

Genomics

Comparative Map Data

Ccnl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	150,184,865 - 150,199,524 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	150,184,798 - 150,197,368 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	157,294,697 - 157,307,010 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	2	155,345,203 - 155,357,516 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	2	149,977,917 - 149,990,230 (-)	NCBI	Rnor_WKY
Rnor_6.0	2	157,747,295 - 157,759,838 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	157,747,542 - 157,759,838 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	177,110,678 - 177,122,977 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	155,757,335 - 155,769,633 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	155,707,300 - 155,719,596 (-)	NCBI
Celera	2	144,599,445 - 144,611,743 (-)	NCBI		Celera
Cytogenetic Map	2	q31	NCBI

CCNL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	157,143,121 - 157,160,147 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	3	157,146,508 - 157,160,760 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	156,860,910 - 156,877,936 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	158,348,279 - 158,361,176 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	158,348,286 - 158,361,184	NCBI
Celera	3	155,289,188 - 155,302,097 (-)	NCBI		Celera
Cytogenetic Map	3	q25.31	NCBI
HuRef	3	154,261,958 - 154,274,873 (-)	NCBI		HuRef
CHM1_1	3	156,828,587 - 156,841,484 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	159,917,663 - 159,934,689 (-)	NCBI		T2T-CHM13v2.0

Ccnl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	65,853,333 - 65,869,451 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	65,853,572 - 65,865,670 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	65,945,908 - 65,962,029 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	65,946,151 - 65,958,249 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	65,750,073 - 65,762,147 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	66,034,080 - 66,046,148 (-)	NCBI		MGSCv36	mm8
Celera	3	66,084,322 - 66,096,395 (-)	NCBI		Celera
Cytogenetic Map	3	E1	NCBI

Ccnl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955448	8,113,216 - 8,124,628 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955448	8,112,774 - 8,125,912 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCNL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	3	155,062,940 - 155,080,377 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	154,192,971 - 154,210,468 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	162,250,825 - 162,264,645 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	162,251,326 - 162,263,174 (-)	Ensembl	panpan1.1		panPan2

CCNL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	50,639,851 - 50,643,777 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	50,512,891 - 50,525,567 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	51,273,830 - 51,286,528 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	51,273,791 - 51,287,522 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	50,857,079 - 50,869,721 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	50,909,267 - 50,921,953 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	51,194,168 - 51,206,919 (-)	NCBI		UU_Cfam_GSD_1.0

Ccnl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	85,676,959 - 85,689,190 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936519	4,044,708 - 4,056,993 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936519	4,044,762 - 4,056,987 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCNL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	96,986,266 - 97,002,467 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	96,984,542 - 97,004,401 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	105,143,782 - 105,161,937 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCNL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	33,592,391 - 33,608,124 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	33,593,500 - 33,609,195 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	6,181,869 - 6,195,601 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccnl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	34,754,581 - 34,768,879 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	34,712,248 - 34,768,236 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ccnl1
39 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	233
Count of miRNA genes:	159
Interacting mature miRNAs:	186
Transcripts:	ENSRNOT00000016016
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	157142209	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	43154682	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	72532993	157142209	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	76539322	150540526	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1354594	Despr10	Despair related QTL 10		0.00000249	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	114654253	159654253	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	114837527	185876470	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
1582257	Gluco21	Glucose level QTL 21	3.1	0.0035	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	118111229	157142209	Rat
738007	Anxrr7	Anxiety related response QTL 7	4.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	118189491	163189491	Rat
1358360	Sradr2	Stress Responsive Adrenal Weight QTL 2	10.24		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	2	129164097	152195315	Rat
6907363	Bp357	Blood pressure QTL 357	4.1	0.002	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	129540907	174540907	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
1549828	Bp258	Blood pressure QTL 258		0.03	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	142323368	150650069	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	143657411	190602963	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
631520	Bp73	Blood pressure QTL 73		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147686913	168355276	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat

Markers in Region

T03514

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	150,185,151 - 150,185,341 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	157,747,582 - 157,747,771	NCBI	Rnor6.0
Rnor_5.0	2	177,110,721 - 177,110,910	UniSTS	Rnor5.0
RGSC_v3.4	2	155,757,378 - 155,757,567	UniSTS	RGSC3.4
Celera	2	144,599,488 - 144,599,677	UniSTS
Cytogenetic Map	2	q31	UniSTS

RH130191

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	150,184,898 - 150,185,092 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	157,747,329 - 157,747,522	NCBI	Rnor6.0
Rnor_5.0	2	177,110,468 - 177,110,661	UniSTS	Rnor5.0
RGSC_v3.4	2	155,757,125 - 155,757,318	UniSTS	RGSC3.4
Celera	2	144,599,235 - 144,599,428	UniSTS
RH 3.4 Map	2	974.8	UniSTS
Cytogenetic Map	2	q31	UniSTS

RH143534

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	150,190,597 - 150,190,789 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	157,753,028 - 157,753,219	NCBI	Rnor6.0
Rnor_5.0	2	177,116,167 - 177,116,358	UniSTS	Rnor5.0
RGSC_v3.4	2	155,762,824 - 155,763,015	UniSTS	RGSC3.4
Celera	2	144,604,933 - 144,605,124	UniSTS
RH 3.4 Map	2	970.7	UniSTS
Cytogenetic Map	2	q31	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	42	57	41	19	41	7	7	74	35	41	11	7
Low		1					1	4					1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005500226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_591102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF030091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC128699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC161817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB608234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000015763 ⟹ ENSRNOP00000015763

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	150,185,109 - 150,197,348 (-)	Ensembl
Rnor_6.0 Ensembl	2	157,747,542 - 157,759,819 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000016016 ⟹ ENSRNOP00000016016

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	150,184,798 - 150,197,368 (-)	Ensembl
Rnor_6.0 Ensembl	2	157,747,542 - 157,759,838 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000109005 ⟹ ENSRNOP00000085346

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	150,184,798 - 150,197,368 (-)	Ensembl

RefSeq Acc Id:

NM_053662 ⟹ NP_446114

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	150,185,109 - 150,197,408 (-)	NCBI
Rnor_6.0	2	157,747,539 - 157,759,838 (-)	NCBI
Rnor_5.0	2	177,110,678 - 177,122,977 (-)	NCBI
RGSC_v3.4	2	155,757,335 - 155,769,633 (-)	RGD
Celera	2	144,599,445 - 144,611,743 (-)	RGD

Sequence:

show sequence

GTCACGGGAATATCCGTCGCGCCGAGGACGCTGGTTAGTCTCGCTTTGGGTTCCGGCTGCGTCG
GGCGTGCGTGTAGCTCGCTAGAACTATGGCGTCCGGGCCTCACCCGACATCGACCGCTGCCGCC
GCCTCTGCCTCGTCCGCCGCCCCGAGTGCGGGCGGCTCCAGCTCCGGCACGACGACCACGACGA
CGACGACGACCGGAGGGATCCTGATTGGCGACCGCCTGTACTCGGAGGTGTCGCTTACCATCGA
CCACTCGGTGATTCCGGAGGAGCGGCTCTCGCCTACCCCGTCCATGCAGGACGGCCTCGACCTG
CCCAGCGAGACGGACCTGCGCATCTTAGGCTGCGAGCTCATCCAGGCCGCCGGCATTCTCCTCC
GGCTGCCGCAGGTGGCGATGGCTACGGGGCAGGTGTTGTTTCATCGTTTTTTCTACTCCAAGTC
TTTCGTCAAACACAGTTTCGAGATTGTTGCCATGGCCTGTATTAATCTTGCATCAAAAATTGAA
GAAGCACCAAGAAGAATAAGAGATGTGATTAATGTATTCCACCACCTCCGCCAGTTAAGAGGAA
AAAGGACTCCAAGCCCCCTGATCCTTGATCAGAACTACATTAACACCAAAAATCAAGTTATCAA
GGCAGAGAGGAGGGTGCTAAAGGAGTTGGGATTTTGTGTTCATGTCAAGCATCCCCATAAGATC
ATTGTAATGTATTTACAAGTCTTAGAATGTGAACGTAACCAAACCCTGGTTCAGACTGCCTGGA
ATTATATGAATGACAGTCTTCGAACCAATGTTTTTGTTCGCTTTCAACCAGAGACTATAGCATG
TGCTTGTATCTACCTTGCAGCTAGAGCACTTCAAATTCCATTGCCAACTCGGCCCCATTGGTTT
CTTCTTTTTGGTACCACAGAAGAGGAGATTCAAGAAATCTGCATAGAGACACTTAGACTTTATA
CCAGGAAAAAGCCTAACTATGAATTGCTGGAAAAGGAAGTAGAAAAAAGAAAAGTAGCCTTACA
GGAAGCCAAGTTAAAGGCAAAGGGATTGAATCTTGATGGAACTCCAGCCCTTTCCACTTTAGGT
GGTTTTTCTCCAGCCTCCAAACCATCATCACCAAGAGAAGTAAAAGCTGAAGAGAAATCACCAG
TTTCCATTAATGTGAAGACAGTCAAAAAAGAACCTGAGGATAGACAACAAGCTTCCAAAAGCCC
TTATAATGGTGTAAGAAAAGACAGCAAGAGAAGCAGAAACAGCAGAAGTGCCAGTAGATCAAGG
TCAAGAACCAGGTCACGCTCTAGATCACACACCCCAAGAAGACATTATAATAATAGGCGAAGTC
GATCTGGAACATACAGCTCAAGATCAAGAAGCAGGTCTCGCAGTCACAGTGAAAGTCCTCGAAG
ACATCATAATCATGGTTCTCCTCACCTTAAGGCCAAACATACCAGAGAAGATTTAAAAAGCTCA
AATAGACATGGTCATAAAAGGAAAAAATCTCGGTCTCGATCTCAGAGCAAGACTCGGGATCACT
CAGATGTTACCAAGAAACACAGGCATGAAAGGGGGCATCACAGAGACAGGCGTGAAAGATCTCG
CTCCTTTGAGAGGTCCCATAAAGGCAAGCACCACGGTGGAAGTCGCTCAGGACATGGCAGGCAT
AGGCGCTGACTTTCATCCTCTGACACTGCATCGGTCCCTGGTGTTGCCCATATGCAGTGTGACG
ATGTATGGACTCAATCAAAACATGAAAAGCAAACTGATTAGGGATTGATTTATTAAAATTGTCT
AGGTTTCTAGAAACACTGAGGACATTTTCTTTTGAAAAGAACTATGTTAAGGTTTTTTGCACAT
TAAAATGCCCTAGCAGTATCTAATTGAAAACCATGGTCAGGTTCAATTGTACTTTATTATAGTT
GTGTATTGTTTATTGCTATAAGAACTGGAGCGTAAATTCTGTAAAAATGTATCTTATTTTTATA
CAGATAAAACTTGCAGACACTGTTCTATTTAAGTGGTTATTTGTTTAAATGATGGTGAATACTT
TCTTAACACTGGTTTGTCCGCATGTGTAAAGATTTTTACAAGGAAATAAAATACAAATCTTGTT
TTTCTAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039101552 ⟹ XP_038957480

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	150,184,865 - 150,198,192 (-)	NCBI

RefSeq Acc Id:

XM_039101553 ⟹ XP_038957481

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	150,184,865 - 150,198,184 (-)	NCBI

RefSeq Acc Id:

XR_005500226

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	150,187,587 - 150,199,524 (-)	NCBI

RefSeq Acc Id:

XR_591102

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	150,184,865 - 150,199,519 (-)	NCBI
Rnor_6.0	2	157,748,168 - 157,759,832 (-)	NCBI

Sequence:

show sequence

GGAATATCCGTCGCGCCGAGGACGCTGGTTAGTCTCGCTTTGGGTTCCGGCTGCGTCGGGCGTG
CGTGTAGCTCGCTAGAACTATGGCGTCCGGGCCTCACCCGACATCGACCGCTGCCGCCGCCTCT
GCCTCGTCCGCCGCCCCGAGTGCGGGCGGCTCCAGCTCCGGCACGACGACCACGACGACGACGA
CGACCGGAGGGATCCTGATTGGCGACCGCCTGTACTCGGAGGTGTCGCTTACCATCGACCACTC
GGTGATTCCGGAGGAGCGGCTCTCGCCTACCCCGTCCATGCAGGACGGCCTCGACCTGCCCAGC
GAGACGGACCTGCGCATCTTAGGCTGCGAGCTCATCCAGGCCGCCGGCATTCTCCTCCGGCTGC
CGCAGGTGGCGATGGCTACGGGGCAGGTGTTGTTTCATCGTTTTTTCTACTCCAAGTCTTTCGT
CAAACACAGTTTCGAGATTGTTGCCATGGCCTGTATTAATCTTGCATCAAAAATTGAAGAAGCA
CCAAGAAGAATAAGAGATGTGATTAATGTATTCCACCACCTCCGCCAGTTAAGAGGAAAAAGGA
CTCCAAGCCCCCTGATCCTTGATCAGAACTACATTAACACCAAAAATCAAGTTATCAAGGCAGA
GAGGAGGGTGCTAAAGGAGTTGGGATTTTGTGTTCATGTCAAGCATCCCCATAAGATCATTGTA
ATGTATTTACAAGTCTTAGAATGTGAACGTAACCAAACCCTGGTTCAGACTGCCTGGGTAGTCC
ATGATGGTAAGTCATAGAACTCTGCCCTCTGCACTTCAGCCCATGACCTCAGGATGGCCTGATT
GGCTAGCCTGCTCTCCAGCCAATCCAGTGCAAGCTCTCATCCGAGATTCACTGAAGTGGTCCAT
ATCCATCTGGCAGCATCTTCTAGTTCTGTCGGGGTGTCAAAAGGATTTGTATATTTGCTTCTAG
AAGTAACTATGCATCATGCCTATGTATTATTCAATGTATACCTGTAACTATCAAAATGAATATT
TCATTTTTGATAGATTGTTGTCCAGCTATTATGAATTGTTTTTGTTTTTTGTTTTTTGTTTTTT
TTTTTAATTGGGTTCAATTAAATTTCTACTTTGCAGTGTGTATGGCATCCTTTCTACCACAGGA
GGCTGAGGCTACCTTACACTGGTAGTTTTAAATAGGTACCTGTTGCCGTTTTTTAGGTTTCTCT
GCTATTGAGCTGTCACAGGCAGTGATATAAGAAGCAATTTTAAAGAGAAGTTGATGTTATTTAA
ATATTTTTGACCTTGGACCTTTGAGAAAGGCTAAGCAAGGAAATTGTGGTTTAGTCATAAATGA
TTCATGTAACTGCTGATAAACAAGCATTAAATAATTCTGGATTTTTCAAAAATGTCTTTTTATG
ACTGCCATGCTTTTGGATTCAATAGATACTGGTAACATTTGAAAAGCCACATTGCTTTATAAAA
TGCATGAGTTTTTAATGTGTTCTATGCAACAAATAACATTAATGAATAAAAGGATTTTATAGAA
ATAATCCATTTAGTTCCAGCTCAGGCTTTTTAGCAAATTGTAGAGTTTTCTAGTTAAGAAATTT
CATGGGAAAGTCTCACTAGAGATTTCTAAGTTTATTTAATTGAACTTAAGTCATTGCTTTTATT
TATATTTAACTGCAAAAAGGTATATTAAAACGGCCATTGTGACATATTTATTGTTCACTTCTCT
ACCTAGATTTTTTGGAAGTGTCTTTTTTTTTTTTTTTTTTTAATTATAAGTCATTTGGTGGATT
CTTACTAAAAATGCCTTTTTACCCCTGTTCATAGTATTTTTAAAGAACTTGATTGACACTGCTT
TTTCGTTATGGATAAAGGAGAGATGGTCAGTAATTAAGGCTTGAAGTATTGTTGGGAGTGGTGA
ATTCTGAACTTATCAAATTGACTTCTAAAACATTGCTTTTTATAACATGTTAAGGGAAGGCCTT
GGGGGTAAGAGCTATATGAGTAATGTAGAATTACTTAAGGTGCTGTGGGGGAATGGTTAGAAAC
TGTTACATGGTGCCATTTAAAGATGTGAATATAAGGAGGAGAAAAAAGAATGAAGTAGATTGAG
TCTCCAATTTTACATGTACTTCAGGAGAATTGGTTTGCTTATGAACTAAGCTTACAGCTGAAAT
GTTTTTCAGGAATTATATGAATGACAGTCTTCGAACCAATGTTTTTGTTCGCTTTCAACCAGAG
ACTATAGCATGTGCTTGTATCTACCTTGCAGCTAGAGCACTTCAAATTCCATTGCCAACTCGGC
CCCATTGGTTTCTTCTTTTTGGTACCACAGAAGAGGAGATTCAAGAAATCTGCATAGAGACACT
TAGACTTTATACCAGGAAAAAGCCTAACTATGAATTGCTGGAAAAGGAAGTAGAAAAAAGAAAA
GTAGCCTTACAGGAAGCCAAGTTAAAGGCAAAGGGATTGAATCTTGATGGAACTCCAGCCCTTT
CCACTTTAGGTGGTTTTTCTCCAGCCTCCAAACCATCATCACCAAGAGAAGTAAAAGCTGAAGA
GAAATCACCAGTTTCCATTAATGTGAAGACAGTCAAAAAAGAACCTGAGGATAGACAACAAGCT
TCCAAAAGCCCTTATAATGGTGTAAGAAAAGACAGCAAGAGAAGCAGAAACAGCAGAAGTGCCA
GTAGATCAAGGTCAAGAACCAGGTCACGCTCTAGATCACACACCCCAAGAAGACATTATAATAA
TAGGCGAAGTCGATCTGGAACATACAGCTCAAGATCAAGAAGCAGGTCTCGCAGTCACAGTGAA
AGTCCTCGAAGACATCATAATCATGGTTCTCCTCACCTTAAGGCCAAACATACCAGAGAAGATT
TAAAAAGCTCAAATAGACATGGTCATAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_446114	(Get FASTA)	NCBI Sequence Viewer
	XP_038957480	(Get FASTA)	NCBI Sequence Viewer
	XP_038957481	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD45558	(Get FASTA)	NCBI Sequence Viewer
	AAH85686	(Get FASTA)	NCBI Sequence Viewer
	AAI61817	(Get FASTA)	NCBI Sequence Viewer
	EDM00936	(Get FASTA)	NCBI Sequence Viewer
	Q9R1Q2	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_446114 ⟸ NM_053662

- UniProtKB:

Q5U364 (UniProtKB/Swiss-Prot), Q9R1Q2 (UniProtKB/Swiss-Prot), B1WBN1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASGPHPTSTAAAASASSAAPSAGGSSSGTTTTTTTTTGGILIGDRLYSEVSLTIDHSVIPEER
LSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEI
VAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQNYINTKNQVIKAERRVLKE
LGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLRTNVFVRFQPETIACACIYLAAR
ALQIPLPTRPHWFLLFGTTEEEIQEICIETLRLYTRKKPNYELLEKEVEKRKVALQEAKLKAKG
LNLDGTPALSTLGGFSPASKPSSPREVKAEEKSPVSINVKTVKKEPEDRQQASKSPYNGVRKDS
KRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPH
LKAKHTREDLKSSNRHGHKRKKSRSRSQSKTRDHSDVTKKHRHERGHHRDRRERSRSFERSHKG
KHHGGSRSGHGRHRR

hide sequence

RefSeq Acc Id:	XP_038957480 ⟸ XM_039101552
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038957481 ⟸ XM_039101553
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSRNOP00000015763 ⟸ ENSRNOT00000015763

RefSeq Acc Id:

ENSRNOP00000016016 ⟸ ENSRNOT00000016016

RefSeq Acc Id:

ENSRNOP00000085346 ⟸ ENSRNOT00000109005

Protein Domains

Cyclin C-terminal Cyclin-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9R1Q2-F1-model_v2	AlphaFold	Q9R1Q2	1-527	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620864	AgrOrtholog
BioCyc Gene	G2FUF-52881	BioCyc
Ensembl Genes	ENSRNOG00000011586	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000015763.7	UniProtKB/TrEMBL
	ENSRNOP00000016016	ENTREZGENE
	ENSRNOP00000016016.2	UniProtKB/Swiss-Prot
	ENSRNOP00000085346.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015763.7	UniProtKB/TrEMBL
	ENSRNOT00000016016	ENTREZGENE
	ENSRNOT00000016016.6	UniProtKB/Swiss-Prot
	ENSRNOT00000109005.1	UniProtKB/TrEMBL
Gene3D-CATH	Cyclin-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:9022416	IMAGE-MGC_LOAD
InterPro	Cyclin-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyclin-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyclin/Ssn8	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyclin_C-dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyclin_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:114121	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:187267	IMAGE-MGC_LOAD
NCBI Gene	114121	ENTREZGENE
PANTHER	PTHR10026	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR10026:SF64	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Cyclin_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyclin_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ccnl1	PhenoGen
PIRSF	Cyclin_L	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	CYCLIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyclin_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF47954	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6A3Q0_RAT	UniProtKB/TrEMBL
	A0A8L2Q7J2_RAT	UniProtKB/TrEMBL
	B1WBN1	ENTREZGENE, UniProtKB/TrEMBL
	CCNL1_RAT	UniProtKB/Swiss-Prot
	Q5U364	ENTREZGENE
	Q9R1Q2	ENTREZGENE
UniProt Secondary	Q5U364	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Ccnl1	cyclin L1	LOC100909712	cyclin-L1-like	Data Merged	737654	PROVISIONAL
2012-07-05	LOC100909712	cyclin-L1-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2004-09-10	Ccnl1	cyclin L1	Ccnl	cyclin L	Symbol and Name updated	1299863	APPROVED
2002-08-07	Ccnl	cyclin L			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localized to nuclear speckles	632453
gene_pathway	may be induced by dopamine-activated signalling pathway	631964

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar