Rpl36 (ribosomal protein L36) - Rat Genome Database

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Gene: Rpl36 (ribosomal protein L36) Rattus norvegicus
Analyze
Symbol: Rpl36 (Ensembl: AABR07064980.1)
Name: ribosomal protein L36
RGD ID: 62085
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Part of cytosolic large ribosomal subunit. Orthologous to human RPL36 (ribosomal protein L36); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S ribosomal protein L36; large ribosomal subunit protein eL36
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,529,117 - 1,534,534 (+)NCBIGRCr8
mRatBN7.291,441,986 - 1,447,397 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl698,809,534 - 98,809,897 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx91,880,070 - 1,880,823 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,230,252 - 7,231,005 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,185,275 - 6,186,028 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,441,228 - 10,441,981 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,441,259 - 10,441,834 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,438,155 - 9,438,908 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,066,440 - 7,067,193 (-)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
3-chloropropane-1,2-diol  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
aconitine  (EXP)
ammonium chloride  (EXP)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cocaine  (EXP)
cyclosporin A  (ISO)
deguelin  (ISO)
dibutyl phthalate  (EXP)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
fenpyroximate  (ISO)
fulvestrant  (ISO)
hydralazine  (ISO)
inulin  (ISO)
ivermectin  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosomorpholine  (EXP)
nitrofen  (EXP)
paracetamol  (ISO)
parathion  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
PhIP  (EXP)
picoxystrobin  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
pyrimidifen  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (ISO)
stigmasterol  (ISO)
sunitinib  (ISO)
tebufenpyrad  (ISO)
tetrachloromethane  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. The primary structure of rat ribosomal protein L36. Chan YL, etal., Biochem Biophys Res Commun 1993 Apr 30;192(2):849-53.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
9. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
10. Isolation of eukaryotic ribosomal proteins. Purification and characterization of 60 S ribosomal subunit proteins L3, L6, L7', L8, L10, L15, L17, L18, L19, L23', L25, L27', L28, L29, L31, L32, L34, L35, L36, L36', and L37'. Tsurugi K, etal., J Biol Chem. 1977 Jun 10;252(11):3961-9.
Additional References at PubMed
PMID:12962325   PMID:16452087   PMID:16791210   PMID:19946888   PMID:22658674   PMID:25957688   PMID:30053369  


Genomics

Comparative Map Data
Rpl36
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,529,117 - 1,534,534 (+)NCBIGRCr8
mRatBN7.291,441,986 - 1,447,397 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl698,809,534 - 98,809,897 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx91,880,070 - 1,880,823 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,230,252 - 7,231,005 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,185,275 - 6,186,028 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,441,228 - 10,441,981 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,441,259 - 10,441,834 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,438,155 - 9,438,908 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,066,440 - 7,067,193 (-)NCBICelera
Cytogenetic Map9q11NCBI
RPL36
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38195,690,295 - 5,691,875 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl195,674,947 - 5,691,875 (+)EnsemblGRCh38hg38GRCh38
GRCh37195,690,306 - 5,691,886 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36195,641,272 - 5,642,678 (+)NCBINCBI36Build 36hg18NCBI36
Build 34195,641,366 - 5,642,676NCBI
Celera195,627,643 - 5,629,049 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef195,451,041 - 5,452,447 (+)NCBIHuRef
CHM1_1195,689,881 - 5,691,287 (+)NCBICHM1_1
T2T-CHM13v2.0195,676,985 - 5,678,565 (+)NCBIT2T-CHM13v2.0
Rpl36
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391756,917,094 - 56,921,246 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1756,920,416 - 56,921,243 (+)EnsemblGRCm39 Ensembl
GRCm381756,610,094 - 56,614,246 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,613,416 - 56,614,243 (+)EnsemblGRCm38mm10GRCm38
MGSCv371756,752,818 - 56,753,669 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,298,553 - 56,299,366 (+)NCBIMGSCv36mm8
Celera1760,957,594 - 60,958,445 (+)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.42NCBI
Rpl36
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554953,729,626 - 3,731,043 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554953,729,626 - 3,731,043 (-)NCBIChiLan1.0ChiLan1.0
RPL36
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22010,086,603 - 10,088,233 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,312,923 - 9,314,419 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0194,707,396 - 4,708,897 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1195,643,030 - 5,644,360 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl195,643,030 - 5,644,360 (+)Ensemblpanpan1.1panPan2
RPL36
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12054,334,256 - 54,335,169 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2054,060,978 - 54,061,750 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,989,877 - 54,990,655 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12054,052,260 - 54,053,143 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02054,532,877 - 54,533,648 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,730,153 - 54,730,916 (-)NCBIUU_Cfam_GSD_1.0
Rpl36
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,569,528 - 214,570,479 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,264,356 - 3,265,244 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,264,356 - 3,265,255 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL36
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl273,286,903 - 73,288,489 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1273,286,906 - 73,288,512 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,808,887 - 73,810,493 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL36
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.165,347,618 - 5,348,818 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660812,754,130 - 2,755,378 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl36
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248284,511,511 - 4,513,995 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248284,512,260 - 4,513,895 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rpl36
6 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:24
Count of miRNA genes:24
Interacting mature miRNAs:24
Transcripts:ENSRNOT00000043704
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 1 1
Medium 3 43 57 41 18 41 8 11 74 35 40 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000043704   ⟹   ENSRNOP00000058934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl910,441,259 - 10,441,834 (-)Ensembl
RefSeq Acc Id: NM_022504   ⟹   NP_071949
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,533,780 - 1,534,533 (+)NCBI
mRatBN7.291,446,643 - 1,447,396 (+)NCBI
Rnor_6.0910,441,228 - 10,441,981 (-)NCBI
Rnor_5.099,438,155 - 9,438,908 (-)NCBI
Celera97,066,440 - 7,067,193 (-)RGD
Sequence:
RefSeq Acc Id: XM_039084146   ⟹   XP_038940074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,529,117 - 1,534,534 (+)NCBI
mRatBN7.291,441,986 - 1,447,397 (+)NCBI
Protein Sequences
Protein RefSeqs NP_071949 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940074 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH58475 (Get FASTA)   NCBI Sequence Viewer  
  CAA48345 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000070800.1
  ENSRNOP00000073975.1
GenBank Protein P39032 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_071949   ⟸   NM_022504
- UniProtKB: Q6PDV5 (UniProtKB/Swiss-Prot),   P39032 (UniProtKB/Swiss-Prot),   A0A0G2K6X1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000058934   ⟸   ENSRNOT00000043704
RefSeq Acc Id: XP_038940074   ⟸   XM_039084146
- Peptide Label: isoform X1
- UniProtKB: A6KQW5 (UniProtKB/TrEMBL),   A0A0G2K6X1 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P39032-F1-model_v2 AlphaFold P39032 1-105 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62085 AgrOrtholog
BioCyc Gene G2FUF-28522 BioCyc
Ensembl Genes ENSRNOG00000033473 Ensembl
  ENSRNOG00000055777 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000060478 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000083272.2 UniProtKB/TrEMBL
  ENSRNOT00000085003.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1760 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6888196 IMAGE-MGC_LOAD
InterPro L36e_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L36e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:58927 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72835 IMAGE-MGC_LOAD
NCBI Gene 58927 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L36 UniProtKB/Swiss-Prot
  60S RIBOSOMAL PROTEIN L36 UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L36 UniProtKB/TrEMBL
  PTHR10114 UniProtKB/Swiss-Prot
Pfam Ribosomal_L36e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpl36 PhenoGen
PROSITE RIBOSOMAL_L36E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000033473 RatGTEx
  ENSRNOG00000055777 RatGTEx
  ENSRNOG00000060478 RatGTEx
TIGR TC228760
UniProt A0A0G2K6X1 ENTREZGENE, UniProtKB/TrEMBL
  A6KQW5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZJJ6_RAT UniProtKB/TrEMBL
  P39032 ENTREZGENE
  Q6PDV5 ENTREZGENE
  RL36_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q6PDV5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Rpl36  ribosomal protein L36      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein 104 amino acids 61735