Cd55 (CD55 molecule (Cromer blood group)) - Rat Genome Database

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Gene: Cd55 (CD55 molecule (Cromer blood group)) Rattus norvegicus
Analyze
Symbol: Cd55
Name: CD55 molecule (Cromer blood group)
RGD ID: 620651
Description: Exhibits enzyme inhibitor activity. Involved in several processes, including maternal process involved in parturition; negative regulation of complement activation; and spermatogenesis. Localizes to apical plasma membrane. Used to study neuroblastoma and proteinuria. Human ortholog(s) of this gene implicated in prostate cancer and protein-losing enteropathy. Orthologous to human CD55 (CD55 molecule (Cromer blood group)); PARTICIPATES IN complement system pathway; coagulation cascade pathway; myocarditis pathway; INTERACTS WITH 1,3-dinitrobenzene; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: CD55 antigen; CD55 molecule, decay accelerating factor for complement; complement decay-accelerating factor; Daf; Daf1; decay accelarating factor 1; decay accelerating factor 1; decay accelerating factor GPI-form; decay-accelarating factor; glycosylphophatidylinositol-anchored form
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Cd55em6Mcwi   Cd55em4Mcwi  
Genetic Models: SD-Cd55em4Mcwi SD-Cd55em6Mcwi
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21341,857,242 - 41,885,966 (-)NCBI
Rnor_6.0 Ensembl1347,126,741 - 47,154,292 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01347,125,156 - 47,153,557 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01352,177,543 - 52,206,137 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41343,322,246 - 43,348,334 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11343,344,956 - 43,362,318 (-)NCBI
Celera1342,209,852 - 42,236,220 (-)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-anisomycin  (ISO)
(-)-demecolcine  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetylsalicylic acid  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
AM-251  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
butyric acid  (EXP)
cadmium selenide  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chloroprene  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
diclofenac  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (EXP)
diuron  (EXP)
dopamine  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
etoposide  (ISO)
fenoldopam  (EXP)
flavonoids  (EXP)
flutamide  (EXP)
folic acid  (ISO)
furan  (EXP)
indometacin  (ISO)
ionomycin  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
mercury dichloride  (ISO)
metam  (ISO)
methamphetamine  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
mitoxantrone  (ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
panobinostat  (ISO)
paracetamol  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phytoestrogen  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
potassium dichromate  (ISO)
propanal  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulfasalazine  (EXP)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP)
thapsigargin  (ISO)
titanium dioxide  (ISO)
toluene 2,4-diisocyanate  (ISO)
torcetrapib  (ISO)
Tributyltin oxide  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Bao L, etal., Kidney Int. 2002 Dec;62(6):2010-21.
2. Berry LJ, etal., Prostate. 2008 May 1;68(6):577-87.
3. Chen S, etal., Cancer Res. 2000 Jun 1;60(11):3013-8.
4. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Gieske MC, etal., J Endocrinol. 2005 Aug;186(2):303-13.
6. Girotti M and Zingg HH, Endocrinology. 2003 Jun;144(6):2254-65.
7. GOA data from the GO Consortium
8. Harris CL, etal., Immunology. 2000 Aug;100(4):462-70.
9. Hinchliffe SJ, etal., J Immunol 1998 Nov 15;161(10):5695-703.
10. Huang Y, etal., Inflammation. 2018 Feb;41(1):232-239. doi: 10.1007/s10753-017-0681-7.
11. Ikeda J, etal., Clin Cancer Res. 2008 Aug 1;14(15):4780-6.
12. Loberg RD, etal., Neoplasia. 2006 Jan;8(1):69-78.
13. Madjd Z, etal., Clin Cancer Res. 2004 Apr 15;10(8):2797-803.
14. MGD data from the GO Consortium
15. Miwa T, etal., Immunogenetics 2000 Feb;51(2):129-37.
16. Mizuno M, etal., Mol Immunol. 2007 Mar;44(7):1613-22. Epub 2006 Sep 27.
17. NCBI rat LocusLink and RefSeq merged data July 26, 2002
18. Nowicki S, etal., Am J Reprod Immunol. 2001 Aug;46(2):144-8.
19. Pipeline to import KEGG annotations from KEGG into RGD
20. Ramlall V, etal., Nat Med. 2020 Aug 3. pii: 10.1038/s41591-020-1021-2. doi: 10.1038/s41591-020-1021-2.
21. RGD automated import pipeline for gene-chemical interactions
22. Simpson KL, etal., Am J Pathol. 1997 Nov;151(5):1455-67.
23. Wang W, etal., J Urol. 2010 Jun;183(6):2424-31. Epub 2010 Apr 18.
24. Yanagawa B, etal., Lab Invest. 2003 Jan;83(1):75-85.
Additional References at PubMed
PMID:6211481   PMID:7525274   PMID:8223854   PMID:9892684   PMID:11313396   PMID:12477932   PMID:12731067   PMID:15907827   PMID:16818763   PMID:17166698   PMID:17826908   PMID:18064521  
PMID:18947875   PMID:19199708   PMID:19299737   PMID:20458337   PMID:23376485   PMID:23533145   PMID:24377861   PMID:25284781   PMID:27662796   PMID:28657829  


Genomics

Comparative Map Data
Cd55
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21341,857,242 - 41,885,966 (-)NCBI
Rnor_6.0 Ensembl1347,126,741 - 47,154,292 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01347,125,156 - 47,153,557 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01352,177,543 - 52,206,137 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41343,322,246 - 43,348,334 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11343,344,956 - 43,362,318 (-)NCBI
Celera1342,209,852 - 42,236,220 (-)NCBICelera
Cytogenetic Map13q13NCBI
CD55
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1207,321,532 - 207,386,804 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1207,321,376 - 207,386,804 (+)EnsemblGRCh38hg38GRCh38
GRCh381207,321,674 - 207,360,966 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371207,495,023 - 207,534,311 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361205,561,488 - 205,600,470 (+)NCBINCBI36hg18NCBI36
Build 341203,883,259 - 203,922,241NCBI
Celera1180,747,405 - 180,786,905 (+)NCBI
Cytogenetic Map1q32.2NCBI
HuRef1178,191,283 - 178,230,783 (+)NCBIHuRef
CHM1_11208,767,582 - 208,807,063 (+)NCBICHM1_1
Cd55
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391130,357,526 - 130,392,746 (-)NCBIGRCm39mm39
GRCm39 Ensembl1130,366,764 - 130,390,481 (-)Ensembl
GRCm381130,429,798 - 130,465,009 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1130,439,027 - 130,462,744 (-)EnsemblGRCm38mm10GRCm38
MGSCv371132,335,606 - 132,359,317 (-)NCBIGRCm37mm9NCBIm37
MGSCv361132,267,758 - 132,290,230 (-)NCBImm8
Celera1133,067,523 - 133,091,208 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map156.89NCBI
Cd55
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540642,773,368 - 42,796,205 (+)NCBIChiLan1.0ChiLan1.0
CD55
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11187,201,195 - 187,240,350 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1187,201,081 - 187,240,350 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01182,923,369 - 182,962,518 (+)NCBIMhudiblu_PPA_v0panPan3
CD55
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.176,361,037 - 6,396,063 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl76,360,964 - 6,386,226 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha75,923,634 - 5,949,508 (+)NCBI
ROS_Cfam_1.076,049,135 - 6,075,038 (+)NCBI
UMICH_Zoey_3.175,982,465 - 6,008,341 (+)NCBI
UNSW_CanFamBas_1.076,084,489 - 6,110,584 (+)NCBI
UU_Cfam_GSD_1.076,125,081 - 6,150,968 (+)NCBI
Cd55
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934468,104,286 - 68,123,978 (-)NCBI
SpeTri2.0NW_0049365575,344,373 - 5,364,234 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD55
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1967,933,069 - 67,960,380 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2974,368,906 - 74,393,140 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2974,313,866 - 74,314,997 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD55
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12522,055,138 - 22,092,472 (-)NCBI
ChlSab1.1 Ensembl2522,073,629 - 22,092,173 (-)Ensembl
Cd55
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248074,252,676 - 4,274,828 (-)NCBI

Position Markers
RH132379  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21341,859,101 - 41,859,262 (+)MAPPER
Rnor_6.01347,126,905 - 47,127,065NCBIRnor6.0
Rnor_5.01352,179,265 - 52,179,425UniSTSRnor5.0
RGSC_v3.41343,321,762 - 43,321,922UniSTSRGSC3.4
Celera1342,209,368 - 42,209,528UniSTS
RH 3.4 Map13108.0UniSTS
Cytogenetic Map13q13UniSTS
RH139453  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21341,868,081 - 41,868,201 (+)MAPPER
Rnor_6.01347,135,774 - 47,135,893NCBIRnor6.0
Rnor_5.01352,188,134 - 52,188,253UniSTSRnor5.0
RGSC_v3.41343,330,741 - 43,330,860UniSTSRGSC3.4
Celera1342,218,349 - 42,218,468UniSTS
RH 3.4 Map13108.8UniSTS
Cytogenetic Map13q13UniSTS
RH141317  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21341,868,081 - 41,868,288 (+)MAPPER
Rnor_6.01347,135,774 - 47,135,980NCBIRnor6.0
Rnor_5.01352,188,134 - 52,188,340UniSTSRnor5.0
RGSC_v3.41343,330,741 - 43,330,947UniSTSRGSC3.4
Celera1342,218,349 - 42,218,555UniSTS
Cytogenetic Map13q13UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13147622148Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131107975663Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131107975663Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131107975663Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13901674250513953Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13901690682995569Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13901690682995569Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1312193394108478121Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131409633059096330Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131409633059096330Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131444158250799665Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131444158251577031Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131462463159624631Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131462463159624631Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131981081464810814Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)132005247765052477Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)132148248158537177Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1324502279108770533Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132800833873008338Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132858445273584452Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132907693474076934Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132907693474076934Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1335301263107975663Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133614753364868393Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133614753399968921Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133614753399968921Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133614753399968921Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133614753399968921Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133734634882346348Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133937292784372927Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133950130093652524Rat
2292232Pur16Proteinuria QTL 1617.2total urine protein amount (VT:0000032)urine protein level (CMO:0000591)134106005747227923Rat
4889861Pur29Proteinuria QTL 2913.80.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)134231074486833540Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)134231074487310744Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)134250834587508345Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)134250834587508345Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134357571788575717Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134567662990676629Rat
2303032Bp328Blood pressure QTL 328arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134644457050799665Rat


Genetic Models
This gene Cd55 is modified in the following models/strains
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:227
Count of miRNA genes:155
Interacting mature miRNAs:183
Transcripts:ENSRNOT00000005284
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 6 16 16 4 16 4 6 10 23 11 4
Low 37 24 8 15 8 4 5 74 25 18 4
Below cutoff 17 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_022269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB026900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB026901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB026902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB026903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB026904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB026905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB032395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB032396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB294577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB294578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC127764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF039583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF039584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB610207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000005284   ⟹   ENSRNOP00000005284
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1347,126,741 - 47,154,292 (-)Ensembl
RefSeq Acc Id: NM_022269   ⟹   NP_071605
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21341,859,586 - 41,885,831 (-)NCBI
Rnor_6.01347,127,278 - 47,153,521 (-)NCBI
Rnor_5.01352,177,543 - 52,206,137 (-)NCBI
RGSC_v3.41343,322,246 - 43,348,334 (-)RGD
Celera1342,209,852 - 42,236,220 (-)RGD
Sequence:
RefSeq Acc Id: XM_006249717   ⟹   XP_006249779
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21341,866,378 - 41,885,889 (-)NCBI
Rnor_6.01347,135,701 - 47,153,550 (-)NCBI
Rnor_5.01352,177,543 - 52,206,137 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006249719   ⟹   XP_006249781
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21341,858,921 - 41,885,861 (-)NCBI
Rnor_6.01347,127,609 - 47,153,546 (-)NCBI
Rnor_5.01352,177,543 - 52,206,137 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006249723   ⟹   XP_006249785
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21341,857,242 - 41,885,945 (-)NCBI
Rnor_6.01347,125,156 - 47,153,557 (-)NCBI
Rnor_5.01352,177,543 - 52,206,137 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769498   ⟹   XP_008767720
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21341,858,921 - 41,885,907 (-)NCBI
Rnor_6.01347,127,609 - 47,153,547 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598923   ⟹   XP_017454412
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21341,857,281 - 41,885,863 (-)NCBI
Rnor_6.01347,125,176 - 47,153,546 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598924   ⟹   XP_017454413
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21341,857,242 - 41,885,966 (-)NCBI
Rnor_6.01347,125,158 - 47,153,556 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039091062   ⟹   XP_038946990
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21341,857,268 - 41,885,872 (-)NCBI
RefSeq Acc Id: XM_039091063   ⟹   XP_038946991
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21341,857,289 - 41,885,571 (-)NCBI
Protein Sequences
Protein RefSeqs NP_071605 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249779 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249781 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249785 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767720 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454412 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454413 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946990 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946991 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC77438 (Get FASTA)   NCBI Sequence Viewer  
  AAC77439 (Get FASTA)   NCBI Sequence Viewer  
  AAH61869 (Get FASTA)   NCBI Sequence Viewer  
  BAA88989 (Get FASTA)   NCBI Sequence Viewer  
  BAA88990 (Get FASTA)   NCBI Sequence Viewer  
  BAA88991 (Get FASTA)   NCBI Sequence Viewer  
  BAA88992 (Get FASTA)   NCBI Sequence Viewer  
  BAA88993 (Get FASTA)   NCBI Sequence Viewer  
  BAA88994 (Get FASTA)   NCBI Sequence Viewer  
  BAA92770 (Get FASTA)   NCBI Sequence Viewer  
  BAA92771 (Get FASTA)   NCBI Sequence Viewer  
  BAA92772 (Get FASTA)   NCBI Sequence Viewer  
  BAF94240 (Get FASTA)   NCBI Sequence Viewer  
  BAF94260 (Get FASTA)   NCBI Sequence Viewer  
  EDM09864 (Get FASTA)   NCBI Sequence Viewer  
  EDM09865 (Get FASTA)   NCBI Sequence Viewer  
  EDM09866 (Get FASTA)   NCBI Sequence Viewer  
  EDM09867 (Get FASTA)   NCBI Sequence Viewer  
  EDM09868 (Get FASTA)   NCBI Sequence Viewer  
  EDM09869 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_071605   ⟸   NM_022269
- Peptide Label: precursor
- UniProtKB: Q9Z0M0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249785   ⟸   XM_006249723
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006249781   ⟸   XM_006249719
- Peptide Label: isoform X4
- UniProtKB: A0A0G2QC50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249779   ⟸   XM_006249717
- Peptide Label: isoform X1
- UniProtKB: Q9Z0L9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767720   ⟸   XM_008769498
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017454413   ⟸   XM_017598924
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017454412   ⟸   XM_017598923
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000005284   ⟸   ENSRNOT00000005284
RefSeq Acc Id: XP_038946990   ⟸   XM_039091062
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038946991   ⟸   XM_039091063
- Peptide Label: isoform X5
Protein Domains
Sushi

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698783
Promoter ID:EPDNEW_R9308
Type:initiation region
Name:Cd55_1
Description:CD55 molecule, decay accelerating factor for complement
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01347,153,498 - 47,153,558EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
13 52205295 52205296 G A snv FHH/EurMcwi (KNAW), FHH/EurMcwi (MCW)


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
13 47152701 47152702 G A snv FHH/EurMcwi (RGD), FHH/EurMcwi (MCW)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
13 43347514 43347515 G A snv FHH/EurMcwi (MDC), FHH/EurMcwi (ICL), FHH/EurMcwi (MCW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620651 AgrOrtholog
Ensembl Genes ENSRNOG00000003927 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000005284 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005284 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5598916 IMAGE-MGC_LOAD
InterPro Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP UniProtKB/TrEMBL
KEGG Report rno:64036 UniProtKB/TrEMBL
MGC_CLONE MGC:72267 IMAGE-MGC_LOAD
NCBI Gene 64036 ENTREZGENE
Pfam Sushi UniProtKB/TrEMBL
PhenoGen Cd55 PhenoGen
PROSITE SUSHI UniProtKB/TrEMBL
SMART CCP UniProtKB/TrEMBL
Superfamily-SCOP Complement_control_module UniProtKB/TrEMBL
UniProt A0A0G2QC50 ENTREZGENE, UniProtKB/TrEMBL
  Q9Z0L9 ENTREZGENE, UniProtKB/TrEMBL
  Q9Z0M0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary G3V6H8 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-02-02 Cd55  CD55 molecule, decay accelerating factor for complement  Cd55  Cd55 molecule  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-29 Cd55  Cd55 molecule  Cd55  CD55 antigen  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-22 Cd55  CD55 antigen  Daf1  decay accelarating factor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Daf1  decay accelarating factor 1  Daf  decay-accelarating factor  Symbol and Name updated 1299863 APPROVED
2002-08-07 Daf  decay-accelarating factor      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains four SCR domains and a serine/threonine rich-stretch that is heavily O glycosylated 632506
gene_protein 70-kDa glycosylphosphatidylinositol (GPI)-linked glycoprotein 632506