Rnf103 (ring finger protein 103) - Rat Genome Database

Advanced Search (OLGA)

Gene: Rnf103 (ring finger protein 103) Rattus norvegicus

Analyze

Symbol:

Rnf103

Name:

ring finger protein 103

RGD ID:

620586

Description:

Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in ERAD pathway and protein ubiquitination. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum. Used to study depressive disorder. Orthologous to human RNF103 (ring finger protein 103); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Adrg34; E3 ubiquitin-protein ligase RNF103; Kf1; RING-type E3 ubiquitin transferase RNF103; zfp-103; Zfp103; zinc finger protein 103

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RNF103 (ring finger protein 103)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Rnf103 (ring finger protein 103)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rnf103 (ring finger protein 103)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RNF103 (ring finger protein 103)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RNF103 (ring finger protein 103)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rnf103 (ring finger protein 103)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RNF103 (ring finger protein 103)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RNF103 (ring finger protein 103)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rnf103 (ring finger protein 103)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rnf103 (ring finger protein 103)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Rnf103 (ring finger protein 103)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RNF103 (ring finger protein 103)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rnf103 (ring finger protein 103)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	chmp3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	chmp3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	105,084,762 - 105,100,839 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	105,084,686 - 105,106,809 (+)	Ensembl				GRCr8
mRatBN7.2	4	103,526,456 - 103,542,529 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	103,526,502 - 103,555,919 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	108,909,563 - 108,925,537 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	104,684,685 - 104,700,659 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	103,296,471 - 103,312,444 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	99,398,479 - 99,415,193 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	99,398,494 - 99,421,164 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	164,178,074 - 164,194,496 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	104,762,184 - 104,778,157 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	92,685,410 - 92,701,383 (+)	NCBI		Celera
RGSC_v3.1	4	105,005,938 - 105,022,637 (+)	NCBI
Cytogenetic Map	4	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

depressive disorder (IDA)

juvenile rheumatoid arthritis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole (EXP)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amiodarone (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzbromarone (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

ciguatoxin CTX1B (ISO)

clofibrate (EXP)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

curcumin (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dimethyl sulfoxide (ISO)

dioxygen (ISO)

doxorubicin (ISO)

fipronil (EXP)

flutamide (EXP)

folic acid (ISO)

fulvestrant (ISO)

glafenine (EXP)

inulin (ISO)

isoprenaline (ISO)

L-ethionine (EXP)

leflunomide (ISO)

omeprazole (EXP)

ozone (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (EXP,ISO)

propiconazole (ISO)

sertraline (EXP)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ERAD pathway (IBA,IEA,ISO)

protein ubiquitination (IBA,IEA,ISO,ISS)

Cellular Component

endoplasmic reticulum (IBA,IEA,ISO,ISS)

endoplasmic reticulum membrane (IEA)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

transferase activity (IEA)

ubiquitin protein ligase activity (IEA)

ubiquitin-protein transferase activity (IBA,IEA,ISO,ISS)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Identification of a novel gene with RING-H2 finger motif induced after chronic antidepressant treatment in rat brain.	Yamada M, etal., Biochem Biophys Res Commun 2000 Nov 11;278(1):150-7.

Additional References at PubMed

PMID:10500182	PMID:12477932	PMID:18675248

Genomics

Comparative Map Data

Rnf103
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	105,084,762 - 105,100,839 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	105,084,686 - 105,106,809 (+)	Ensembl				GRCr8
mRatBN7.2	4	103,526,456 - 103,542,529 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	103,526,502 - 103,555,919 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	108,909,563 - 108,925,537 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	104,684,685 - 104,700,659 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	103,296,471 - 103,312,444 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	99,398,479 - 99,415,193 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	99,398,494 - 99,421,164 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	164,178,074 - 164,194,496 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	104,762,184 - 104,778,157 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	92,685,410 - 92,701,383 (+)	NCBI		Celera
RGSC_v3.1	4	105,005,938 - 105,022,637 (+)	NCBI
Cytogenetic Map	4	q32	NCBI

RNF103
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	86,603,393 - 86,623,877 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	86,603,395 - 86,623,877 (-)	Ensembl			hg38	GRCh38
GRCh37	2	86,830,516 - 86,851,000 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	86,684,027 - 86,704,489 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	86,742,174 - 86,762,636	NCBI
Celera	2	86,658,407 - 86,678,870 (-)	NCBI		Celera
Cytogenetic Map	2	p11.2	NCBI
HuRef	2	86,728,170 - 86,748,085 (-)	NCBI		HuRef
CHM1_1	2	86,760,437 - 86,780,923 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	86,605,396 - 86,625,879 (-)	NCBI		T2T-CHM13v2.0

Rnf103
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	71,470,828 - 71,487,864 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	71,470,878 - 71,487,865 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	71,493,844 - 71,510,880 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	71,493,894 - 71,510,881 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	71,443,888 - 71,460,875 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	71,423,403 - 71,440,390 (+)	NCBI		MGSCv36	mm8
Celera	6	73,573,253 - 73,590,240 (+)	NCBI		Celera
Cytogenetic Map	6	C1	NCBI
cM Map	6	32.16	NCBI

Rnf103
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	1,097,981 - 1,117,844 (+)	Ensembl
ChiLan1.0 Ensembl	NW_004955424	1,130,565 - 1,160,887 (+)	Ensembl
ChiLan1.0	NW_004955424	1,097,981 - 1,161,267 (+)	NCBI	ChiLan1.0	ChiLan1.0

RNF103
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	39,755,754 - 39,776,239 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	39,758,516 - 39,779,000 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	86,659,672 - 86,680,154 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

RNF103
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	38,549,838 - 38,566,613 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	38,549,828 - 38,566,149 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	38,235,604 - 38,252,356 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	39,282,716 - 39,299,449 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	39,282,705 - 39,299,839 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	38,449,002 - 38,465,752 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	38,485,209 - 38,502,055 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	38,833,202 - 38,849,951 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rnf103
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	79,860,350 - 79,880,798 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936712	977,644 - 999,051 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936712	977,650 - 997,623 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RNF103
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	58,161,261 - 58,186,858 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	58,161,087 - 58,183,750 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	60,919,064 - 60,941,736 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RNF103
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666045	91,947,140 - 91,967,856 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rnf103
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	16,688,389 - 16,708,419 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624749	16,689,010 - 16,712,673 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rnf103
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	74,516,104 - 74,533,216 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rnf103
57 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	48
Count of miRNA genes:	39
Interacting mature miRNAs:	48
Transcripts:	ENSRNOT00000064374
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	86583980	149763391	Rat
631689	Scl4	Serum cholesterol level QTL 4	1.9	0.008	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	96731383	141731383	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	39431983	123203361	Rat
1578655	Bmd11	Bone mineral density QTL 11	11		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	4	92406430	137406430	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
1357342	Bw40	Body weight QTL 40		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	4	74233320	119233320	Rat
631556	Bp135	Blood pressure QTL 135		0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	80212111	119233320	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
70167	Bw22	Body weight QTL 22	3.1		body mass (VT:0001259)	body weight (CMO:0000012)	4	74233320	119233320	Rat
1549839	Bw52	Body weight QTL 52		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	71647492	116647492	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82944895	154403548	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	27862204	126119996	Rat
61476	Aia3	Adjuvant induced arthritis QTL 3	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	75939858	140508796	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	65060960	127749483	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	51085655	113588029	Rat
1578670	Bss14	Bone structure and strength QTL 14	16.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	4	88883695	133883695	Rat
2317588	Eae27	Experimental allergic encephalomyelitis QTL 27			nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	4	69036742	114036742	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	40490442	117737312	Rat
70201	Gcr1	Gastric cancer resistance QTL 1	2.7		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	4	103834277	148834277	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
1578662	Bss15	Bone structure and strength QTL 15	19.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	4	88883695	133883695	Rat
2306547	Iddm38	Insulin dependent diabetes mellitus QTL 38			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	68353567	113353567	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
2306545	Iddm39	Insulin dependent diabetes mellitus QTL 39			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	78687630	123687630	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	74169813	134199155	Rat
634334	Xhs3	X-ray hypersensitivity QTL 3	10		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	86058928	131411333	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	75939858	140508796	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	0.0003	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	84349032	129349032	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63245026	129846354	Rat
631651	Bp124	Blood pressure QTL 124	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	64209744	109209744	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	57664252	127749483	Rat
2306899	Bp338	Blood pressure QTL 338		0.071	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	82336765	127336765	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	86583980	131583980	Rat
61434	Cia3	Collagen induced arthritis QTL 3	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63224393	108224393	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	33538597	116185060	Rat

Markers in Region

AW146237

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	103,542,382 - 103,542,462 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	99,415,047 - 99,415,126	NCBI	Rnor6.0
Rnor_5.0	4	164,194,350 - 164,194,429	UniSTS	Rnor5.0
RGSC_v3.4	4	104,778,011 - 104,778,090	UniSTS	RGSC3.4
Celera	4	92,701,237 - 92,701,316	UniSTS
Cytogenetic Map	4	q33	UniSTS

RH134592

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	103,542,071 - 103,542,265 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	99,414,736 - 99,414,929	NCBI	Rnor6.0
Rnor_5.0	4	164,194,039 - 164,194,232	UniSTS	Rnor5.0
RGSC_v3.4	4	104,777,700 - 104,777,893	UniSTS	RGSC3.4
Celera	4	92,700,926 - 92,701,119	UniSTS
RH 3.4 Map	4	630.64	UniSTS
Cytogenetic Map	4	q33	UniSTS

MARC_24177-24178:1033563974:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	103,541,402 - 103,542,061 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	99,414,067 - 99,414,725	NCBI	Rnor6.0
Rnor_5.0	4	164,193,370 - 164,194,028	UniSTS	Rnor5.0
RGSC_v3.4	4	104,777,031 - 104,777,689	UniSTS	RGSC3.4
Celera	4	92,700,257 - 92,700,915	UniSTS
Cytogenetic Map	4	q33	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF306394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC100629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000064374 ⟹ ENSRNOP00000062726

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	99,398,494 - 99,415,192 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088018 ⟹ ENSRNOP00000072898

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	105,084,686 - 105,106,809 (+)	Ensembl
mRatBN7.2 Ensembl	4	103,526,502 - 103,555,919 (+)	Ensembl
Rnor_6.0 Ensembl	4	99,399,148 - 99,421,164 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104694 ⟹ ENSRNOP00000090023

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	105,084,686 - 105,098,710 (+)	Ensembl
mRatBN7.2 Ensembl	4	103,526,502 - 103,540,403 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108994 ⟹ ENSRNOP00000089357

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	105,084,686 - 105,100,829 (+)	Ensembl
mRatBN7.2 Ensembl	4	103,526,502 - 103,537,838 (+)	Ensembl

RefSeq Acc Id:

NM_053438 ⟹ NP_445890

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	105,084,863 - 105,100,836 (+)	NCBI
mRatBN7.2	4	103,526,556 - 103,542,529 (+)	NCBI
Rnor_6.0	4	99,399,220 - 99,415,193 (+)	NCBI
Rnor_5.0	4	164,178,074 - 164,194,496 (+)	NCBI
RGSC_v3.4	4	104,762,184 - 104,778,157 (+)	RGD
Celera	4	92,685,410 - 92,701,383 (+)	RGD

Sequence:

show sequence

CGGCTCCCGGCGACGCCAAGAGGGCGAAGATGTGGCTGAAGCTGTTTTTCTTGCTCCTGTATTT
CCTGATCCTGTTCGTCCTGGCCAGGTTTTTTGAGGCCATTGTGTGGTACGAGACTGGCATCTTT
GCTACTCAGCTGGTGGATCCGGTGGCATTGAGCTTCAAGAAGCTGAAGACCATTCTGGAGTGTC
GAGGGCTGGGCTACTCCGGACTACCTGAGAAGAAAGATGTACGGGAGCTGGTGGAGAAGTCAGG
TGACTTGATGGAAGGTGAACTCTATTCTGCTCTCAAGGAAGAAGAAGCATCTGAGTCTGTTTCT
AGTACCAATTTCAGTGGTGAAATGCATTTCTATGAGCTTGTAGAAGACACAAAAGATGGCATCT
GGCTGGTTCAGGTCATAGCAAATGACAGAAGTCCTTTGGTGGGTAAAATCCACTGGGAGAAAAT
GGTAAAAAAAGTGTCAAGATTTGGAATACGGACAGGCACTTTCAACTGTTCCAGTGATCCCAGG
TACTGCAGAAGGAGAGGCTGGGTACGTTCCACTCTCATCATGTCTGTCCCACAAACAAGCACAT
CTAAAGGGAAAGTCATGCTTAAAGAGTACAGTGGGCGCAAGATTGAAGTAGAACACATTTTTAA
ATGGATAACTGCCCATGCAGCTTCTCGGATCAAAACTATATATAATGTTGAGCATTTGAAAGAA
GAATGGAATAAAAGTGATCAGTACTGGGTAAAAATATACCTGTTTGCAAACCTTGACCAACCAC
CAGCTTTCTTCTCTGCATTAAGTATAAAATTTACTGGAAGAGTTGAGTTTATTTTTGTTAATGT
GGAAAATTGGAACAACAAGAGTTATATGACAGATATTGGTATTTATAACATGCCGTCATACATA
CTTAGAACTCCTGAAGGAATTTACAGATATGGAAATCACACAGGTGAATTTATATCCCTTCAGG
CCATGGATTCATTTTTACGCTCATTACAACCTGAAGTAAATGATCTGTTTGTTTTGAGTTTGGT
TCTAGTTAATCTTATGGCTTGGATGGACTTATTTATTACACAAGGAGCAACCATCAAGCGATTT
GTGGTTCTCATAAGCACTTTAGGGACATACAATTCCCTATTAATTATTTCTTGGCTACCTGTGT
TGGGCTTTCTACAGCTCCCTTACTTAGATAGCTTTTATGAATATAGTTTAAGATTGCTGCGATA
CTCTAATACAACCACACTGGCTTCGTGGGTAAGGGCAGACTGGATGTTTTACTCTTCACACCCA
GCCCTGTTTCTCAGTACATACCTTGGACATGGTTTGCTAATTGATTACTTTGAGAAGAAGAGAC
GGCGCAGCAACAATGATGAAGTTAATGCGAATAATTTAGAGTGGTTATCAAGTCTGTGGGACTG
GTACACCAGCTACCTCTTCCACCCGATTGCTTCTTTTCAGAACTTTCCTGTAGACTCTGATTGG
GATGAAGACCCTGACTTATTCTTGGAGCGGTTAGCTTTCCCTGACCTTTGGCTTCACCCTCTGA
TACCAACTGATTATATTAAAAACTTACCAATGTGGCGGTTTAAATGTCTTGGGGCTCAGTCTGA
AGAAGAAATGTCGGAGAGTTCTCAAGACACTGAAAATGACTCAGATAGTGACAACACGGACACT
TTTAGTAGTAGTAAGGATGTATTTGAAGATAAACAAAATGTTCACAGTTCTCCAGGAAGAACAA
GTCGCTGCGATACTGAGGCTTGTTCATGTGCCAATAAATGTTGTCAGACCAGCCCATGTGAAAG
GAAGAGGAGGTCATATGGCTCACATAATACTAAGGAAGATATGGAGCCGGACTGGCTAACTTGG
CCTGCTGGTACGCTGCACTGTACTGAATGTGTTGTTTGCCTTGAGAATTTTGAGAATGGATGTT
TGCTGATGGGGTTGCCTTGTGGTCATGTGTTTCACCAGAATTGCATTGTTATGTGGTTGGCTGG
GGGCCGACACTGTTGCCCTGTTTGCCGTTGGCCTTCATATAAGAAAAAGCAGCCATATGCACAG
CAACAGCCGTTGTCAAATGATGCTCCATCTTGACCATGTGCAGTTGTCCAATAAGCTTTGAGTA
TCTTACAGCTTGCCTTTTTAATGTTAGTCACAATGTTTTTGTGGTTTGAAGTTTAGTTTAATGT
TAGTGCAGTGACAGGAAATACACATTATGCTGATGTTGATGACAGAATTTATTTGGATGCCTTG
TGTGTCAATTGAATGCATACTAAACTGTAAAAAAATTATTTACAGCATTGAAAATTCAGAAGTT
AATGGGTTTTTTGTAAGCACAAAAGAGGTATGGTAGAAATTTATCTTAGCAAGACTTTATGAGG
CAGGATCAAATCCTAGTGGGCCTGAGCTGATTTCTTACCCTAAATGTTTTTTCCCTTTTTACAA
TCTCTGTCCAGCACCTCTTGGTTAAATAATGTATGCTCTGAGACATGAAATTAAAACAGATCTA
TAAAATAAATTATTTTAAAAGCAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006236653 ⟹ XP_006236715

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	105,084,762 - 105,100,839 (+)	NCBI
mRatBN7.2	4	103,526,456 - 103,542,529 (+)	NCBI
Rnor_6.0	4	99,398,479 - 99,415,193 (+)	NCBI
Rnor_5.0	4	164,178,074 - 164,194,496 (+)	NCBI

Sequence:

show sequence

CCAGTGCTCCGGGGGCGACGGCCGTGGCCTGAGGAGGCGGCAGGGACGGTGGCCGCGGTTGGCG
CGGCGCATCCGCACAGGGCTAGTCCCCGCGCAGCTACGCAACTGACAGGAAGCCTCCCTGGAGA
GCCGCGTCGGGGCCTAGTGTTATTTGCTTTTTGCTTTTTCTCCCTTCACGACTGTGGTCTCGCG
CTCTTCCTCAGCGGGAGCCGCCGCGACGCCCCCTCGCGGGCCGCCGGCCTGAGAGGCGCCGCCC
GCGGGAACCTGGAGCCGCCGCCGGGCCTGGGCGGCCGCCGGGGCCTGAAGCCTGGGCGTTCGGC
GCGGCGCTGCGACGACCGCTCCAACCCGCGCTGGGCGCGCCGGGCCCCAGGCCTGGCCCAGCCG
AGCACCGCGCCTTCCGGACTGGGGCCACGTAGTCCGGCGCCAACCGCCCTCCGCTGGCCCGCAG
TCTATCGGAGCTGCCTCCTGGGTCACCCCTGGTGGGCTCTTGCCCCTTCCAGCCTTCCGCGGTT
CGATGGGTGGAGTGCTTTTGAACGTACCCTCTTCTCCCTTTCTCAGCTCTTGACCGCAAGGCCA
GAGCCGGCGCCCTCAGCCGCACGCACGCAGCGATCCACCTGCCTCCCCGCGGGGATGGCCCGCG
GGTGACCGCCACCGCCGCGCGCCCTCGCTGCCCTCGCCGCCCTCGCCCAGGCTACGCTCCGTCG
CCCCGCACTCGACCCCCTCTTCTTGTCCACGGCGTCCCGGCTCCCGGCGACGCCAAGAGGGCGA
AGATGTGGCTGAAGCTGTTTTTCTTGCTCCTGTATTTCCTGATCCTGTTCGTCCTGGCCAGGTT
TTTTGAGGCCATTGTGTGGTACGAGACTGGCATCTTTGCTACTCAGCTGGTGGATCCGGTGGCA
TTGAGCTTCAAGAAGCTGAAGACCATTCTGGAGTGTCGAGGGCTGGGCTACTCCGGACTACCTG
AGAAGAAAGATGTACGGGAGCTGGTGGAGAAGTCAGGTGACTTGATGGAAGGTGAACTCTATTC
TGCTCTCAAGGAAGAAGAAGCATCTGAGTCTGTTTCTAGTACCAATTTCAGTGGTGAAATGCAT
TTCTATGAGCTTGTAGAAGACACAAAAGATGGCATCTGGCTGGTTCAGGTCATAGCAAATGACA
GAAGTCCTTTGGTGGGTAAAATCCACTGGGAGAAAATGGTAAAAAAAGTGTCAAGATTTGGAAT
ACGGACAGGCACTTTCAACTGTTCCAGTGATCCCAGTTTACTCTCTTACAGGTACTGCAGAAGG
AGAGGCTGGGTACGTTCCACTCTCATCATGTCTGTCCCACAAACAAGCACATCTAAAGGGAAAG
TCATGCTTAAAGAGTACAGTGGGCGCAAGATTGAAGTAGAACACATTTTTAAATGGATAACTGC
CCATGCAGCTTCTCGGATCAAAACTATATATAATGTTGAGCATTTGAAAGAAGAATGGAATAAA
AGTGATCAGTACTGGGTAAAAATATACCTGTTTGCAAACCTTGACCAACCACCAGCTTTCTTCT
CTGCATTAAGTATAAAATTTACTGGAAGAGTTGAGTTTATTTTTGTTAATGTGGAAAATTGGAA
CAACAAGAGTTATATGACAGATATTGGTATTTATAACATGCCGTCATACATACTTAGAACTCCT
GAAGGAATTTACAGATATGGAAATCACACAGGTGAATTTATATCCCTTCAGGCCATGGATTCAT
TTTTACGCTCATTACAACCTGAAGTAAATGATCTGTTTGTTTTGAGTTTGGTTCTAGTTAATCT
TATGGCTTGGATGGACTTATTTATTACACAAGGAGCAACCATCAAGCGATTTGTGGTTCTCATA
AGCACTTTAGGGACATACAATTCCCTATTAATTATTTCTTGGCTACCTGTGTTGGGCTTTCTAC
AGCTCCCTTACTTAGATAGCTTTTATGAATATAGTTTAAGATTGCTGCGATACTCTAATACAAC
CACACTGGCTTCGTGGGTAAGGGCAGACTGGATGTTTTACTCTTCACACCCAGCCCTGTTTCTC
AGTACATACCTTGGACATGGTTTGCTAATTGATTACTTTGAGAAGAAGAGACGGCGCAGCAACA
ATGATGAAGTTAATGCGAATAATTTAGAGTGGTTATCAAGTCTGTGGGACTGGTACACCAGCTA
CCTCTTCCACCCGATTGCTTCTTTTCAGAACTTTCCTGTAGACTCTGATTGGGATGAAGACCCT
GACTTATTCTTGGAGCGGTTAGCTTTCCCTGACCTTTGGCTTCACCCTCTGATACCAACTGATT
ATATTAAAAACTTACCAATGTGGCGGTTTAAATGTCTTGGGGCTCAGTCTGAAGAAGAAATGTC
GGAGAGTTCTCAAGACACTGAAAATGACTCAGATAGTGACAACACGGACACTTTTAGTAGTAGT
AAGGATGTATTTGAAGATAAACAAAATGTTCACAGTTCTCCAGGAAGAACAAGTCGCTGCGATA
CTGAGGCTTGTTCATGTGCCAATAAATGTTGTCAGACCAGCCCATGTGAAAGGAAGAGGAGGTC
ATATGGCTCACATAATACTAAGGAAGATATGGAGCCGGACTGGCTAACTTGGCCTGCTGGTACG
CTGCACTGTACTGAATGTGTTGTTTGCCTTGAGAATTTTGAGAATGGATGTTTGCTGATGGGGT
TGCCTTGTGGTCATGTGTTTCACCAGAATTGCATTGTTATGTGGTTGGCTGGGGGCCGACACTG
TTGCCCTGTTTGCCGTTGGCCTTCATATAAGAAAAAGCAGCCATATGCACAGCAACAGCCGTTG
TCAAATGATGCTCCATCTTGACCATGTGCAGTTGTCCAATAAGCTTTGAGTATCTTACAGCTTG
CCTTTTTAATGTTAGTCACAATGTTTTTGTGGTTTGAAGTTTAGTTTAATGTTAGTGCAGTGAC
AGGAAATACACATTATGCTGATGTTGATGACAGAATTTATTTGGATGCCTTGTGTGTCAATTGA
ATGCATACTAAACTGTAAAAAAATTATTTACAGCATTGAAAATTCAGAAGTTAATGGGTTTTTT
GTAAGCACAAAAGAGGTATGGTAGAAATTTATCTTAGCAAGACTTTATGAGGCAGGATCAAATC
CTAGTGGGCCTGAGCTGATTTCTTACCCTAAATGTTTTTTCCCTTTTTACAATCTCTGTCCAGC
ACCTCTTGGTTAAATAATGTATGCTCTGAGACATGAAATTAAAACAGATCTATAAAATAAATTA
TTTTAAAAGCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_445890	(Get FASTA)	NCBI Sequence Viewer
	XP_006236715	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAG37065	(Get FASTA)	NCBI Sequence Viewer
	AAI00630	(Get FASTA)	NCBI Sequence Viewer
	EDL90994	(Get FASTA)	NCBI Sequence Viewer
	EDL90996	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000089357
GenBank Protein	Q9EPZ8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_445890 ⟸ NM_053438

- UniProtKB:

Q9EPZ8 (UniProtKB/Swiss-Prot), Q497B6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MWLKLFFLLLYFLILFVLARFFEAIVWYETGIFATQLVDPVALSFKKLKTILECRGLGYSGLPE
KKDVRELVEKSGDLMEGELYSALKEEEASESVSSTNFSGEMHFYELVEDTKDGIWLVQVIANDR
SPLVGKIHWEKMVKKVSRFGIRTGTFNCSSDPRYCRRRGWVRSTLIMSVPQTSTSKGKVMLKEY
SGRKIEVEHIFKWITAHAASRIKTIYNVEHLKEEWNKSDQYWVKIYLFANLDQPPAFFSALSIK
FTGRVEFIFVNVENWNNKSYMTDIGIYNMPSYILRTPEGIYRYGNHTGEFISLQAMDSFLRSLQ
PEVNDLFVLSLVLVNLMAWMDLFITQGATIKRFVVLISTLGTYNSLLIISWLPVLGFLQLPYLD
SFYEYSLRLLRYSNTTTLASWVRADWMFYSSHPALFLSTYLGHGLLIDYFEKKRRRSNNDEVNA
NNLEWLSSLWDWYTSYLFHPIASFQNFPVDSDWDEDPDLFLERLAFPDLWLHPLIPTDYIKNLP
MWRFKCLGAQSEEEMSESSQDTENDSDSDNTDTFSSSKDVFEDKQNVHSSPGRTSRCDTEACSC
ANKCCQTSPCERKRRSYGSHNTKEDMEPDWLTWPAGTLHCTECVVCLENFENGCLLMGLPCGHV
FHQNCIVMWLAGGRHCCPVCRWPSYKKKQPYAQQQPLSNDAPS

hide sequence

RefSeq Acc Id:	XP_006236715 ⟸ XM_006236653
- Peptide Label:	isoform X1
- UniProtKB:	Q9EPZ8 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MWLKLFFLLLYFLILFVLARFFEAIVWYETGIFATQLVDPVALSFKKLKTILECRGLGYSGLPE KKDVRELVEKSGDLMEGELYSALKEEEASESVSSTNFSGEMHFYELVEDTKDGIWLVQVIANDR SPLVGKIHWEKMVKKVSRFGIRTGTFNCSSDPSLLSYRYCRRRGWVRSTLIMSVPQTSTSKGKV MLKEYSGRKIEVEHIFKWITAHAASRIKTIYNVEHLKEEWNKSDQYWVKIYLFANLDQPPAFFS ALSIKFTGRVEFIFVNVENWNNKSYMTDIGIYNMPSYILRTPEGIYRYGNHTGEFISLQAMDSF LRSLQPEVNDLFVLSLVLVNLMAWMDLFITQGATIKRFVVLISTLGTYNSLLIISWLPVLGFLQ LPYLDSFYEYSLRLLRYSNTTTLASWVRADWMFYSSHPALFLSTYLGHGLLIDYFEKKRRRSNN DEVNANNLEWLSSLWDWYTSYLFHPIASFQNFPVDSDWDEDPDLFLERLAFPDLWLHPLIPTDY IKNLPMWRFKCLGAQSEEEMSESSQDTENDSDSDNTDTFSSSKDVFEDKQNVHSSPGRTSRCDT EACSCANKCCQTSPCERKRRSYGSHNTKEDMEPDWLTWPAGTLHCTECVVCLENFENGCLLMGL PCGHVFHQNCIVMWLAGGRHCCPVCRWPSYKKKQPYAQQQPLSNDAPS hide sequence

Ensembl Acc Id:

ENSRNOP00000062726 ⟸ ENSRNOT00000064374

Ensembl Acc Id:

ENSRNOP00000072898 ⟸ ENSRNOT00000088018

Ensembl Acc Id:

ENSRNOP00000089357 ⟸ ENSRNOT00000108994

Ensembl Acc Id:

ENSRNOP00000090023 ⟸ ENSRNOT00000104694

Protein Domains

RING-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9EPZ8-F1-model_v2	AlphaFold	Q9EPZ8	1-682	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693114

Promoter ID:

EPDNEW_R3639

Type:

multiple initiation site

Name:

Rnf103_1

Description:

ring finger protein 103

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	99,398,481 - 99,398,541	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620586	AgrOrtholog
BioCyc Gene	G2FUF-44181	BioCyc
Ensembl Genes	ENSRNOG00000007272	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000108994	ENTREZGENE
Gene3D-CATH	3.30.40.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7938106	IMAGE-MGC_LOAD
InterPro	RNF103	UniProtKB/Swiss-Prot
	Znf_RING	UniProtKB/Swiss-Prot
	Znf_RING/FYVE/PHD	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124587	IMAGE-MGC_LOAD
NCBI Gene	84508	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF103	UniProtKB/Swiss-Prot
	PTHR15302	UniProtKB/Swiss-Prot
Pfam	zf-RING_2	UniProtKB/Swiss-Prot
PhenoGen	Rnf103	PhenoGen
PROSITE	ZF_RING_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000007272	RatGTEx
SMART	RING	UniProtKB/Swiss-Prot
Superfamily-SCOP	RING/U-box	UniProtKB/Swiss-Prot
UniProt	A0A0G2K441_RAT	UniProtKB/TrEMBL
	A0A8I6ABR7_RAT	UniProtKB/TrEMBL
	A0A8I6ACT2_RAT	UniProtKB/TrEMBL
	Q497B6	ENTREZGENE, UniProtKB/TrEMBL
	Q9EPZ8	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Rnf103	ring finger protein 103	Zfp103	zinc finger protein 103	Symbol and Name updated	1299863	APPROVED
2002-08-07	Zfp103	zinc finger protein 103			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains a C-terminal RING-H2 finger motif	634523

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - CTD