Adam15 (ADAM metallopeptidase domain 15)

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Gene: Adam15 (ADAM metallopeptidase domain 15) Rattus norvegicus

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Symbol:

Adam15

Name:

ADAM metallopeptidase domain 15

RGD ID:

620402

Description:

Predicted to enable SH3 domain binding activity; metalloendopeptidase activity; and signaling receptor binding activity. Involved in male gonad development; response to hypobaric hypoxia; and tissue regeneration. Predicted to be located in cell surface and extracellular exosome. Predicted to be active in extracellular space. Orthologous to human ADAM15 (ADAM metallopeptidase domain 15); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-amino-2-deoxy-D-glucopyranose; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

a disintegrin and metallopeptidase domain 15 (metargidin); a disintegrin and metalloproteinase domain (ADAM) 15 (metargidin); a disintegrin and metalloproteinase domain 15; a disintegrin and metalloproteinase domain 15 (metargidin); ADAM 15; CRII-7; disintegrin and metalloproteinase domain-containing protein 15; MDC-15; MDC15; metalloprotease RGD disintegrin protein; metalloproteinase-like, disintegrin-like, and cysteine-rich protein 15; metargidin; tMDC VI; tMDCVI

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ADAM15 (ADAM metallopeptidase domain 15)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Adam15 (ADAM metallopeptidase domain 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Adam15 (ADAM metallopeptidase domain 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ADAM15 (ADAM metallopeptidase domain 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ADAM15 (ADAM metallopeptidase domain 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Adam15 (ADAM metallopeptidase domain 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ADAM15 (ADAM metallopeptidase domain 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ADAM15 (ADAM metallopeptidase domain 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Adam15 (ADAM metallopeptidase domain 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ADAM15 (ADAM metallopeptidase domain 15)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Adam15 (ADAM metallopeptidase domain 15)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	adam15 (ADAM metallopeptidase domain 15)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Meltrin	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	adm-2	Alliance	DIOPT (Hieranoid\|InParanoid\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	adam15	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	177,052,363 - 177,062,879 (-)	NCBI		GRCr8
mRatBN7.2	2	174,754,629 - 174,765,136 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	174,754,633 - 174,765,113 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	181,899,637 - 181,910,172 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	179,922,013 - 179,932,548 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	174,522,552 - 174,533,074 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	188,661,831 - 188,672,337 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	188,661,699 - 188,672,247 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	208,071,874 - 208,082,531 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	181,527,175 - 181,537,640 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	181,477,282 - 181,487,746 (-)	NCBI
Celera	2	168,696,199 - 168,706,661 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brain Hypoxia (IEP)

Charcot-Marie-Tooth disease type 2 (ISO)

COVID-19 (ISO)

gastrointestinal stromal tumor (ISO)

immunodeficiency 42 (ISO)

MHC class II deficiency (ISO)

osteoarthritis (ISO)

pancreatic cancer (ISO)

parathyroid carcinoma (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-amino-2-deoxy-D-glucopyranose (EXP)

3,3',5-triiodo-L-thyronine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole (EXP)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aldehydo-D-glucosamine (EXP)

alpha-pinene (ISO)

amiodarone (EXP)

ammonium chloride (EXP)

amphetamine (EXP)

azoxystrobin (EXP)

benzbromarone (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

beta-D-glucosamine (EXP)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

butan-1-ol (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP)

carmustine (ISO)

chlorpyrifos (EXP,ISO)

choline (ISO)

clofibrate (EXP,ISO)

dexamethasone (ISO)

dibenz[a,h]anthracene (ISO)

dieldrin (ISO)

doxorubicin (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

genistein (ISO)

glyphosate (EXP)

imidacloprid (EXP)

indometacin (ISO)

L-ethionine (EXP)

L-methionine (ISO)

methamphetamine (ISO)

mifepristone (EXP)

omeprazole (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

pirinixic acid (EXP,ISO)

quercetin (ISO)

temozolomide (ISO)

tetrachloromethane (EXP,ISO)

thiabendazole (EXP)

thioacetamide (EXP)

triclosan (ISO)

triphenyl phosphate (ISO)

valdecoxib (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

angiogenesis (IEA)

apoptotic process (ISO)

cardiac epithelial to mesenchymal transition (ISO)

cell-cell adhesion (TAS)

cellular response to phorbol 13-acetate 12-myristate (ISO)

collagen catabolic process (IEA)

immune response to tumor cell (ISO)

innate immune response (IBA,ISO)

integrin-mediated signaling pathway (IBA,ISO)

male gonad development (IEP)

negative regulation of cell growth (ISO)

negative regulation of cell migration (ISO)

negative regulation of cell-matrix adhesion (ISO)

proteolysis (IBA,IEA)

response to hypobaric hypoxia (IEP)

tissue regeneration (IEP)

Cellular Component

acrosomal vesicle (IEA)

adherens junction (IEA)

cell surface (ISO)

extracellular exosome (ISO)

extracellular space (IBA)

membrane (IEA)

motile cilium (IEA)

Molecular Function

immunoglobulin receptor binding (ISO)

integrin binding (IBA,ISO)

metal ion binding (IEA)

metalloendopeptidase activity (IBA,IEA,TAS)

metallopeptidase activity (ISO)

protein binding (ISO)

SH3 domain binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Integrin alpha5beta1 and ADAM-17 interact in vitro and co-localize in migrating HeLa cells.	Bax DV, etal., J Biol Chem. 2004 May 21;279(21):22377-86. Epub 2004 Feb 16.
2.	Homeostatic effects of the metalloproteinase disintegrin ADAM15 in degenerative cartilage remodeling.	Bohm BB, etal., Arthritis Rheum. 2005 Apr;52(4):1100-9.
3.	Cellular localization of the disintegrin CRII-7/rMDC15 mRNA in rat PNS and CNS and regulated expression in postnatal development and after nerve injury.	Bosse F, etal., Glia 2000 Dec;32(3):313-27.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Interaction of the metalloprotease disintegrins MDC9 and MDC15 with two SH3 domain-containing proteins, endophilin I and SH3PX1.	Howard L, etal., J Biol Chem. 1999 Oct 29;274(44):31693-9.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	GOA pipeline	RGD automated data pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Chronological gene expression of ADAMs during testicular development: prespermatogonia (gonocytes) express fertilin beta (ADAM2).	Rosselot C, etal., Dev Dyn. 2003 Jul;227(3):458-67.
12.	Differential expression of ADAM15 and ADAM17 metalloproteases in the rat brain after severe hypobaric hypoxia and hypoxic preconditioning.	Rybnikova E, etal., Neurosci Res. 2012 Apr;72(4):364-73. doi: 10.1016/j.neures.2011.12.010. Epub 2012 Jan 2.
13.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
14.	Increased expression of ADAM 9 and ADAM 15 mRNA in pancreatic cancer.	Yamada D, etal., Anticancer Res. 2007 Mar-Apr;27(2):793-9.

Additional References at PubMed

PMID:9291465	PMID:12777399	PMID:19156209	PMID:22167186	PMID:22505472	PMID:24006456

Genomics

Comparative Map Data

Adam15
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	177,052,363 - 177,062,879 (-)	NCBI		GRCr8
mRatBN7.2	2	174,754,629 - 174,765,136 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	174,754,633 - 174,765,113 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	181,899,637 - 181,910,172 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	179,922,013 - 179,932,548 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	174,522,552 - 174,533,074 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	188,661,831 - 188,672,337 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	188,661,699 - 188,672,247 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	208,071,874 - 208,082,531 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	181,527,175 - 181,537,640 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	181,477,282 - 181,487,746 (-)	NCBI
Celera	2	168,696,199 - 168,706,661 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

ADAM15
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	155,051,316 - 155,062,775 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	155,050,566 - 155,062,775 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	155,023,792 - 155,035,251 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	153,290,386 - 153,301,876 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	151,836,834 - 151,848,325	NCBI
Celera	1	128,094,785 - 128,106,774 (+)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	126,385,749 - 126,397,256 (+)	NCBI		HuRef
CHM1_1	1	156,419,572 - 156,431,076 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	154,190,701 - 154,202,162 (+)	NCBI		T2T-CHM13v2.0

Adam15
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	89,246,947 - 89,257,589 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	89,245,849 - 89,257,303 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	89,339,640 - 89,350,028 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	89,338,542 - 89,349,996 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	89,143,562 - 89,153,932 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	89,424,469 - 89,435,909 (-)	NCBI		MGSCv36	mm8
Celera	3	89,374,683 - 89,385,053 (-)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	39.07	NCBI

Adam15
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	1,545,635 - 1,555,614 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955545	1,545,532 - 1,555,826 (+)	NCBI	ChiLan1.0	ChiLan1.0

ADAM15
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	94,778,158 - 94,789,698 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	94,510,197 - 94,521,712 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	130,398,961 - 130,410,860 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	134,008,959 - 134,020,467 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	134,008,959 - 134,020,467 (+)	Ensembl	panpan1.1		panPan2

ADAM15
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	42,432,067 - 42,443,463 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	42,428,113 - 42,443,429 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	41,923,026 - 41,933,600 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	42,301,837 - 42,312,428 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	42,301,842 - 42,312,494 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	42,081,565 - 42,092,138 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	42,135,440 - 42,145,971 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	42,418,961 - 42,429,316 (-)	NCBI		UU_Cfam_GSD_1.0

Adam15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	25,557,826 - 25,568,277 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	4,588,039 - 4,599,014 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	4,588,182 - 4,598,659 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ADAM15
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	94,736,646 - 94,748,098 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	94,736,639 - 94,748,093 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	103,518,254 - 103,529,683 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ADAM15
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	8,767,836 - 8,779,399 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	8,768,112 - 8,779,311 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	8,102,189 - 8,113,704 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Adam15
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624885	2,441,217 - 2,451,057 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624885	2,441,298 - 2,451,061 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Adam15
42 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	260
Count of miRNA genes:	160
Interacting mature miRNAs:	170
Transcripts:	ENSRNOT00000027970, ENSRNOT00000050868
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168358098	223265385	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
61457	Niddm8	Non-insulin dependent diabetes mellitus QTL 8	4.1	0.01	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	2	174543008	175950118	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	185122374	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	185122374	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	157142209	202446871	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	185122374	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	185122374	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168354880	185122374	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	157142078	211086598	Rat
61473	Bp19	Blood pressure QTL 19	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	172710921	175950118	Rat
12879845	Cm89	Cardiac mass QTL 89		0.008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	175950118	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
12879846	Cm90	Cardiac mass QTL 90		0.011	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	2	152413072	175950118	Rat
12879847	Am4	Aortic mass QTL 4		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	175950118	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	185122374	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	157142078	192625452	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
2301415	Cm67	Cardiac mass QTL 67		0.003	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	175950118	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	168594495	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
11565180	Kidm56	Kidney mass QTL 56		0.003	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	175950118	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150341585	189039377	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
11565181	Bw176	Body weight QTL 176		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	175950118	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	172710921	184114403	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	162765032	207765032	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166539266	211539266	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	160564068	205564068	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
7488904	Bp363	Blood pressure QTL 363		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	172982062	175950118	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat

Markers in Region

RH135252

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	174,760,548 - 174,760,742 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	188,667,749 - 188,667,942	NCBI	Rnor6.0
Rnor_5.0	2	208,077,790 - 208,077,983	UniSTS	Rnor5.0
RGSC_v3.4	2	181,533,091 - 181,533,284	UniSTS	RGSC3.4
Celera	2	168,702,118 - 168,702,311	UniSTS
RH 3.4 Map	2	1155.9	UniSTS
Cytogenetic Map	2	q34	UniSTS

RH139781

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	174,754,659 - 174,754,849 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	188,661,860 - 188,662,049	NCBI	Rnor6.0
Rnor_5.0	2	208,071,901 - 208,072,090	UniSTS	Rnor5.0
RGSC_v3.4	2	181,527,202 - 181,527,391	UniSTS	RGSC3.4
Celera	2	168,696,226 - 168,696,415	UniSTS
RH 3.4 Map	2	1156.4	UniSTS
Cytogenetic Map	2	q34	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	21	102	39	11	27	11	15	6	135	101	96	57	3
Low		39	188	136	42	136	21	39	115	14	49		21
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001399128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_020308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC098750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ251198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC061796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Y11492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000027970 ⟹ ENSRNOP00000027970

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	174,754,635 - 174,765,098 (-)	Ensembl
Rnor_6.0 Ensembl	2	188,661,699 - 188,672,226 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000050868 ⟹ ENSRNOP00000039351

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	174,754,665 - 174,765,088 (-)	Ensembl
Rnor_6.0 Ensembl	2	188,661,835 - 188,672,247 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105677 ⟹ ENSRNOP00000091249

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	174,754,633 - 174,765,113 (-)	Ensembl

RefSeq Acc Id:

NM_001399128 ⟹ NP_001386057

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	177,052,363 - 177,062,849 (-)	NCBI
mRatBN7.2	2	174,754,629 - 174,765,116 (-)	NCBI

RefSeq Acc Id:

NM_001399129 ⟹ NP_001386058

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	177,052,363 - 177,062,849 (-)	NCBI
mRatBN7.2	2	174,754,629 - 174,765,116 (-)	NCBI

RefSeq Acc Id:

NM_020308 ⟹ NP_064704

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	177,052,363 - 177,062,849 (-)	NCBI
mRatBN7.2	2	174,754,629 - 174,765,116 (-)	NCBI
Rnor_6.0	2	188,661,833 - 188,672,297 (-)	NCBI
Rnor_5.0	2	208,071,874 - 208,082,531 (-)	NCBI
RGSC_v3.4	2	181,527,175 - 181,537,640 (-)	RGD
Celera	2	168,696,199 - 168,706,661 (-)	RGD

Sequence:

show sequence

AGCTGGTGTCCGGCGGGGCCGTGGCTGCTCCTCCACGCTTAGCCCCGCACCTGCTGCCCTCGTC
CGGCCCGGAGCTCCGCGGCCATGCGGCTGGCGCTGCTCTGGGCCCTGGGACTCCTGGGCGCGGG
CAGCCCTCGGCCCTCCCCGCCGCTGCCAAATATAGGAGGTACTGAGGAAGAGCAGCAAGCCAGC
CCAGAGAGGACCCAGAGTAGATCCTTGGAGAACCAGGTTGTTCAGGACAGCCCCCCAATTAACC
TAACAGAAGTGCTTCAGACTGGTTTACCTGAGACCCTGAGGATTGGATTGGAGCTGGACGGTGA
GAATCATATCCTGGAGCTTCAACAGAATAGAGATCTGGTCCCTGGCCGCCCGACTCTGGTGTGG
TATCAGCCTGACGGCACCCGAATGGTCAGCGAGGGGCACAGTCTGGAAAACTGCTGCTATCGAG
GACGAGTTCAGGGCCGCCCCAGCTCTTGGGTCTCCCTCTGTGCCTGCTCTGGGATCAGGGGGCT
GGTAGTCCTGTCCCCTGAGAGAAGCTATACACTGGAGCTGGGACCTGGAGACCTTCAGCGTCCT
CTCATTGTTTCTCGGATCCAAGACCTCCTCTTGCCAGGCCACACCTGTGCCCCAAGCTGGCATG
CATTTGTGCCCACCGAGGCAGCACCAGACCTCCTTTTGGAACAGCACCACCTTCGCAGGCTTAA
GCGGGATGTAGTAACAGAGACGAAAATTGTCGAACTGGTGATTGTGGCTGATAATTCAGAGGTC
AGGAAGTACCCTGACTTCCAACAACTGCTGAACCGAACACTAGAAGTGGCCCTTCTGCTAGACA
CATTCTTCCAGCCCCTGAATGTCCGGGTAGCACTTGTGGGCCTAGAGGCATGGACCCAGCGCGA
CCTGATAGAGATGAGCTCCAACCCAGCTGTCCTGCTAGACAACTTCCTCCGCTGGCGCCGGACA
GACTTGCTGCCTCGACTGCCCCATGATAGTGCCCAGCTTGTGACTGTTACTTCCTTCTCTGGGC
CCATGGTGGGCATGGCCATTCAGAATTCCATCTGTTCTCCTGACTTCTCGGGAGGTGTGAATAT
GGACCACTCGACAAGCATCTTAGGAGTTGCCTCCTCCATTGCCCACGAGTTGGGTCACAGCCTG
GGCCTAGACCACGATTCACCTGGGAACAGTTGTCCCTGTCCAGGTCCAGCCCCAGCCAAGAGCT
GCATCATGGAGGCCTCCACAGATTTCCTACCAGGTCTGAACTTCAGCAACTGCAGCCGATGGGC
CCTGGAAAAAGCCCTCCTAGATGGGATGGGCAGCTGCCTCTTTGAATGGCCACCCAGCCGGGCC
CCTATGTCCTCTTTGTGTGGAAATATGTTTGTGGACCCTGGAGAGCAGTGTGACTGTGGCTTCC
CAGATGAGTGCACTGATCCTTGCTGTGACTATTTTACCTGCCAGCTGAGGCCGGGAGCACAGTG
TGCATCTGACGGACCCTGTTGTCAAAACTGCAAGTTACAGCCAGCTGGCTGGCAGTGCCGCCTT
CCCACAGACGATTGCGATTTGCCTGAGTTCTGCCTAGGAGATAGCTCTCAGTGCCCCCCTGACA
TCAGGCTTGGGGACGGTGAGCCTTGTGCTAGTGGAGAGGCTGTGTGTATGCATGGGCGCTGTGC
CTCCTACACCCGGCAGTGCCAGTCGCTTTGGGGACCTGGGGCCCAGCCTGCTGCACCACTTTGC
CTCCAAACAGCCAACACTCGGGGTAATGCCTTTGGGAGCTGTGGGCGCAGCCCCAGTGGTAGCT
ACATGCCTTGCAACCTTAGAGATGCCATTTGTGGGCAACTACAGTGCCAGTGGGGTAGGAATCA
GCCTCTGCTGGGCTCAGTCCAAGATCAGCTCTCGGAGGTCTTGGAAGCCAATGGGACACAATTA
AACTGCAGCTGGGTAGATCTGGACTTGGGCAATGATGTGGCCCAGCCTCTCCTGGCTCTACCTG
GCACTGCCTGTGGCCCTGGCCTGGTGTGCATCGGCCATCGATGCCAGCCTGTGGATCTCCTGGG
AGCACAGGAATGCCGCAGCAAATGCCATGGCCATGGGGTCTGCGACAGCAGCAGGCACTGCCAC
TGTGACGAGGGCTGGGCACCTCCTGATTGCATGACCCAGCTCAGAGCAACCAGCTCCCTGACCA
CAGGCCTGCTCCTCAGCCTCCTGTTGTTATTGGTCCTCGTACTACTTGGTGCCAGCTACTGGTA
CCGTGCCCGCCTGCATCAGCGGCTCTGCCAGCTCAAGGGATCCAGCTGCCAATATAGGGCAGCC
CAATCCGGTCCTCCTGAGCGACCAGGACCTCCACAGAGGGCACAGCAGATGCCAGGCACTAAGC
CTCAGGGGCCTACCAAACCCCCACCCCCAAGAAAGCCACTGCCCGCCAACCCACAGGGCCGGCC
CCCGCTGGGTGACCTGCCTGGCCCAGGAGATGGAAGCTTGCAGCTGGTAGTGCCTTCCAGGCCT
GCCCCACCACCCCCAGCAGCATCTTCGCTCTACCTCTGACCCCTCGAGATTCGGCTGTCTCCTG
CTCAGTTCTAGGACTTAAAGTGGAACCTCTGTCTGAATCTCCCACAAAACACTAGAGAAGCAGA
AGCTTAGACAATATGGCATCCAGCCCTAAAGAACCACCAGGCGCTGTTCAGTAGTACCTGGGAC
CCACTGAATTACCTGCAGCTGAGTGTTGGGAAGGGGCTGGGGCTGGAGTAGGTGGTGGAAGGAC
GGGAATGTGGTCTGTCTCTGCTCTGTTGTAATAAATGTGAGGTCTTGGAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006232744 ⟹ XP_006232806

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	177,052,365 - 177,062,865 (-)	NCBI
mRatBN7.2	2	174,754,631 - 174,765,136 (-)	NCBI
Rnor_6.0	2	188,661,831 - 188,672,337 (-)	NCBI
Rnor_5.0	2	208,071,874 - 208,082,531 (-)	NCBI

Sequence:

show sequence

TAGCCGGGGCGGGGCGGGGCCTAGTGGCTGTGCTGCGCGGAGCTGGTGTCCGACGCGGCCCCGG
CTGCTCCTCCACGCTTAGCCCCGCACCTGCTGCCCTCGTCCGGCCCGGAGCTCCGCGGCCATGC
GGCTGGCGCTGCTCTGGGCCCTGGGACTCCTGGGCGCGGGCAGCCCTCGGCCCTCCCCGCCGCT
GCCAAATATAGGAGGTACTGAGGAAGAGCAGCAAGCCAGCCCAGAGAGGACCCAGAGTAGATCC
TTGGAGAACCAGGTTGTTCAGGACAGCCCCCCAATTAACCTAACAGAAGTGCTTCAGACTGGTT
TACCTGAGACCCTGAGGATTGGATTGGAGCTGGACGGTGAGAATCATATCCTGGAGCTTCAACA
GAATAGAGATCTGGTCCCTGGCCGCCCGACTCTGGTGTGGTATCAGCCTGACGGCACCCGAATG
GTCAGCGAGGGGCACAGTCTGGAAAACTGCTGCTATCGAGGACGAGTTCAGGGCCGCCCCAGCT
CTTGGGTCTCCCTCTGTGCCTGCTCTGGGATCAGGGGGCTGGTAGTCCTGTCCCCTGAGAGAAG
CTATACACTGGAGCTGGGACCTGGAGACCTTCAGCGTCCTCTCATTGTTTCTCGGATCCAAGAC
CTCCTCTTGCCAGGCCACACCTGTGCCCCAAGCTGGCATGCATTTGTGCCCACCGAGGCAGCAC
CAGACCTCCTTTTGGAACAGCACCACCTTCGCAGGCTTAAGCGGGATGTAGTAACAGAGACGAA
AATTGTCGAACTGGTGATTGTGGCTGATAATTCAGAGGTCAGGAAGTACCCTGACTTCCAACAA
CTGCTGAACCGAACACTAGAAGTGGCCCTTCTGCTAGACACATTCTTCCAGCCCCTGAATGTCC
GGGTAGCACTTGTGGGCCTAGAGGCATGGACCCAGCGCGACCTGATAGAGATGAGCTCCAACCC
AGCTGTCCTGCTAGACAACTTCCTCCGCTGGCGCCGGACAGACTTGCTGCCTCGACTGCCCCAT
GATAGTGCCCAGCTTGTGACTGTTACTTCCTTCTCTGGGCCCATGGTGGGCATGGCCATTCAGA
ATTCCATCTGTTCTCCTGACTTCTCGGGAGGTGTGAATATGGACCACTCGACAAGCATCTTAGG
AGTTGCCTCCTCCATTGCCCACGAGTTGGGTCACAGCCTGGGCCTAGACCACGATTCACCTGGG
AACAGTTGTCCCTGTCCAGGTCCAGCCCCAGCCAAGAGCTGCATCATGGAGGCCTCCACAGATT
TCCTACCAGGTCTGAACTTCAGCAACTGCAGCCGATGGGCCCTGGAAAAAGCCCTCCTAGATGG
GATGGGCAGCTGCCTCTTTGAATGGCCACCCAGCCGGGCCCCTATGTCCTCTTTGTGTGGAAAT
ATGTTTGTGGACCCTGGAGAGCAGTGTGACTGTGGCTTCCCAGATGAGTGCACTGATCCTTGCT
GTGACTATTTTACCTGCCAGCTGAGGCCGGGAGCACAGTGTGCATCTGACGGACCCTGTTGTCA
AAACTGCAAGTTACAGCCAGCTGGCTGGCAGTGCCGCCTTCCCACAGACGATTGCGATTTGCCT
GAGTTCTGCCTAGGAGATAGCTCTCAGTGCCCCCCTGACATCAGGCTTGGGGACGGTGAGCCTT
GTGCTAGTGGAGAGGCTGTGTGTATGCATGGGCGCTGTGCCTCCTACACCCGGCAGTGCCAGTC
GCTTTGGGGACCTGGGGCCCAGCCTGCTGCACCACTTTGCCTCCAAACAGCCAACACTCGGGGT
AATGCCTTTGGGAGCTGTGGGCGCAGCCCCAGTGGTAGCTACATGCCTTGCAACCTTAGAGATG
CCATTTGTGGGCAACTACAGTGCCAGTGGGGTAGGAACCAGCCTCTGCTGGGCTCAGTCCAAGA
TCAGCTCTCGGAGGTCCTGGAAGCCAATGGGACACAATTAAACTGCAGCTGGGTAGATCTGGAC
TTGGGCAATGATGTGGCCCAGCCTCTCCTGGCTCTACCTGGCACTGCCTGTGGCCCTGGCCTGG
TGTGCATCGGCCATCGATGCCAGCCTGTGGATCTCCTGGGAGCACAGGAATGCCGCAGCAAATG
CCATGGCCATGGGGTCTGCGACAGCAGCAGGCACTGCCACTGTGACGAGGGCTGGGCACCTCCT
GATTGCATGACCCAGCTCAGAGCAACCAGCTCCCTGACCACAGGCCTGCTCCTCAGCCTCCTGT
TGTTATTGGTCCTCGTACTACTTGGTGCCAGCTACTGGTACCGTGCCCGCCTGCATCAGCGGCT
CTGCCAGCTCAAGGGATCCAGCTGCCAATATAGGGCAGCCCAATCCGGTCCTCCTGAGCGACCA
GGACCTCCACAGAGGGCACAGCAGATGCCAGGCACTAAGGCTGAGCTGGCTGACCGATCCAATC
CCCCCACTCGCCCTCTGCCCGCTGACCCTGTGGTGTGGCGCCCAAAGCCTCAGGGGCCTACCAA
ACCCCCACCCCCAAGAAAGCCACTGCCCGCCAACCCACAGGGCCGGCCCCCGCTGGGTGACCTG
CCTGGCCCAGGAGATGGAAGCTTGCAGCTGGTAGTGCCTTCCAGGCCTGCCCCACCACCCCCAG
CAGCATCTTCGCTCTACCTCTGACCCCTCGAGATTCGGCTGTCTCCTGCTCAGTTCTAGGACTT
AAAGTGGAACCTCTGTCTGAATCTCCCACAAAACACTAGAGAAGCAGAAGCTTAGACAATATGG
CATCCAGCCCTAAAGAACCACCAGGCGCTGTTCAGTAGTACCTGGGACCCACTGAATTACCTGC
AGCTGAGTGTTGGGAAGGGGCTGGGGCTGGAGTAGGTGGTGGAAGGACGGGAATGTGGTCTGTC
TCTGCTCTGTTGTAATAAATGTGAGGTCTTGGAATA

hide sequence

RefSeq Acc Id:

XM_008761203 ⟹ XP_008759425

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	177,052,365 - 177,062,879 (-)	NCBI
mRatBN7.2	2	174,754,631 - 174,765,136 (-)	NCBI
Rnor_6.0	2	188,661,831 - 188,672,337 (-)	NCBI

Sequence:

show sequence

TAGCCGGGGCGGGGCGGGGCCTAGTGGCTGTGCTGCGCGGAGCTGGTGTCCGACGCGGCCCCGG
CTGCTCCTCCACGCTTAGCCCCGCACCTGCTGCCCTCGTCCGGCCCGGAGCTCCGCGGCCATGC
GGCTGGCGCTGCTCTGGGCCCTGGGACTCCTGGGCGCGGGCAGCCCTCGGCCCTCCCCGCCGCT
GCCAAATATAGGAGGTACTGAGGAAGAGCAGCAAGCCAGCCCAGAGAGGACCCAGAGTAGATCC
TTGGAGAACCAGGTTGTTCAGGACAGCCCCCCAATTAACCTAACAGAAGTGCTTCAGACTGGTT
TACCTGAGACCCTGAGGATTGGATTGGAGCTGGACGGTGAGAATCATATCCTGGAGCTTCAACA
GAATAGAGATCTGGTCCCTGGCCGCCCGACTCTGGTGTGGTATCAGCCTGACGGCACCCGAATG
GTCAGCGAGGGGCACAGTCTGGAAAACTGCTGCTATCGAGGACGAGTTCAGGGCCGCCCCAGCT
CTTGGGTCTCCCTCTGTGCCTGCTCTGGGATCAGGGGGCTGGTAGTCCTGTCCCCTGAGAGAAG
CTATACACTGGAGCTGGGACCTGGAGACCTTCAGCGTCCTCTCATTGTTTCTCGGATCCAAGAC
CTCCTCTTGCCAGGCCACACCTGTGCCCCAAGCTGGCATGCATTTGTGCCCACCGAGGCAGCAC
CAGACCTCCTTTTGGAACAGCACCACCTTCGCAGGGTGAGGAGACAGACTCAGAGCCCAGACCC
CAGGCTTAAGCGGGATGTAGTAACAGAGACGAAAATTGTCGAACTGGTGATTGTGGCTGATAAT
TCAGAGGTCAGGAAGTACCCTGACTTCCAACAACTGCTGAACCGAACACTAGAAGTGGCCCTTC
TGCTAGACACATTCTTCCAGCCCCTGAATGTCCGGGTAGCACTTGTGGGCCTAGAGGCATGGAC
CCAGCGCGACCTGATAGAGATGAGCTCCAACCCAGCTGTCCTGCTAGACAACTTCCTCCGCTGG
CGCCGGACAGACTTGCTGCCTCGACTGCCCCATGATAGTGCCCAGCTTGTGACTGTTACTTCCT
TCTCTGGGCCCATGGTGGGCATGGCCATTCAGAATTCCATCTGTTCTCCTGACTTCTCGGGAGG
TGTGAATATGGACCACTCGACAAGCATCTTAGGAGTTGCCTCCTCCATTGCCCACGAGTTGGGT
CACAGCCTGGGCCTAGACCACGATTCACCTGGGAACAGTTGTCCCTGTCCAGGTCCAGCCCCAG
CCAAGAGCTGCATCATGGAGGCCTCCACAGATTTCCTACCAGGTCTGAACTTCAGCAACTGCAG
CCGATGGGCCCTGGAAAAAGCCCTCCTAGATGGGATGGGCAGCTGCCTCTTTGAATGGCCACCC
AGCCGGGCCCCTATGTCCTCTTTGTGTGGAAATATGTTTGTGGACCCTGGAGAGCAGTGTGACT
GTGGCTTCCCAGATGAGTGCACTGATCCTTGCTGTGACTATTTTACCTGCCAGCTGAGGCCGGG
AGCACAGTGTGCATCTGACGGACCCTGTTGTCAAAACTGCAAGTTACAGCCAGCTGGCTGGCAG
TGCCGCCTTCCCACAGACGATTGCGATTTGCCTGAGTTCTGCCTAGGAGATAGCTCTCAGTGCC
CCCCTGACATCAGGCTTGGGGACGGTGAGCCTTGTGCTAGTGGAGAGGCTGTGTGTATGCATGG
GCGCTGTGCCTCCTACACCCGGCAGTGCCAGTCGCTTTGGGGACCTGGGGCCCAGCCTGCTGCA
CCACTTTGCCTCCAAACAGCCAACACTCGGGGTAATGCCTTTGGGAGCTGTGGGCGCAGCCCCA
GTGGTAGCTACATGCCTTGCAACCTTAGAGATGCCATTTGTGGGCAACTACAGTGCCAGTGGGG
TAGGAACCAGCCTCTGCTGGGCTCAGTCCAAGATCAGCTCTCGGAGGTCCTGGAAGCCAATGGG
ACACAATTAAACTGCAGCTGGGTAGATCTGGACTTGGGCAATGATGTGGCCCAGCCTCTCCTGG
CTCTACCTGGCACTGCCTGTGGCCCTGGCCTGGTGTGCATCGGCCATCGATGCCAGCCTGTGGA
TCTCCTGGGAGCACAGGAATGCCGCAGCAAATGCCATGGCCATGGGGTCTGCGACAGCAGCAGG
CACTGCCACTGTGACGAGGGCTGGGCACCTCCTGATTGCATGACCCAGCTCAGAGCAACCAGCT
CCCTGACCACAGGCCTGCTCCTCAGCCTCCTGTTGTTATTGGTCCTCGTACTACTTGGTGCCAG
CTACTGGTACCGTGCCCGCCTGCATCAGCGGCTCTGCCAGCTCAAGGGATCCAGCTGCCAATAT
AGGGCAGCCCAATCCGGTCCTCCTGAGCGACCAGGACCTCCACAGAGGGCACAGCAGATGCCAG
GCACTAAGCAAGCTAATGTCAGCTTTCCAGTACCCCCCTCCAGGCCGCTGCCACCTAACCCCGT
GCCCAAGAAACTCCAGGCTGAGCTGGCTGACCGATCCAATCCCCCCACTCGCCCTCTGCCCGCT
GACCCTGTGGTGTGGCGCCCAAAGCCTCAGGGGCCTACCAAACCCCCACCCCCAAGAAAGCCAC
TGCCCGCCAACCCACAGGGCCGGCCCCCGCTGGGTGACCTGCCTGGCCCAGGAGATGGAAGCTT
GCAGCTGGTAGTGCCTTCCAGGCCTGCCCCACCACCCCCAGCAGCATCTTCGCTCTACCTCTGA
CCCCTCGAGATTCGGCTGTCTCCTGCTCAGTTCTAGGACTTAAAGTGGAACCTCTGTCTGAATC
TCCCACAAAACACTAGAGAAGCAGAAGCTTAGACAATATGGCATCCAGCCCTAAAGAACCACCA
GGCGCTGTTCAGTAGTACCTGGGACCCACTGAATTACCTGCAGCTGAGTGTTGGGAAGGGGCTG
GGGCTGGAGTAGGTGGTGGAAGGACGGGAATGTGGTCTGTCTCTGCTCTGTTGTAATAAATGTG
AGGTCTTGGAATA

hide sequence

RefSeq Acc Id:

XM_008761204 ⟹ XP_008759426

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	177,052,365 - 177,062,865 (-)	NCBI
mRatBN7.2	2	174,754,631 - 174,765,136 (-)	NCBI
Rnor_6.0	2	188,661,831 - 188,672,337 (-)	NCBI

Sequence:

show sequence

TAGCCGGGGCGGGGCGGGGCCTAGTGGCTGTGCTGCGCGGAGCTGGTGTCCGACGCGGCCCCGG
CTGCTCCTCCACGCTTAGCCCCGCACCTGCTGCCCTCGTCCGGCCCGGAGCTCCGCGGCCATGC
GGCTGGCGCTGCTCTGGGCCCTGGGACTCCTGGGCGCGGGCAGCCCTCGGCCCTCCCCGCCGCT
GCCAAATATAGGAGGTACTGAGGAAGAGCAGCAAGCCAGCCCAGAGAGGACCCAGAGTAGATCC
TTGGAGAACCAGGTTGTTCAGGACAGCCCCCCAATTAACCTAACAGAAGTGCTTCAGACTGGTT
TACCTGAGACCCTGAGGATTGGATTGGAGCTGGACGGTGAGAATCATATCCTGGAGCTTCAACA
GAATAGAGATCTGGTCCCTGGCCGCCCGACTCTGGTGTGGTATCAGCCTGACGGCACCCGAATG
GTCAGCGAGGGGCACAGTCTGGAAAACTGCTGCTATCGAGGACGAGTTCAGGGCCGCCCCAGCT
CTTGGGTCTCCCTCTGTGCCTGCTCTGGGATCAGGGGGCTGGTAGTCCTGTCCCCTGAGAGAAG
CTATACACTGGAGCTGGGACCTGGAGACCTTCAGCGTCCTCTCATTGTTTCTCGGATCCAAGAC
CTCCTCTTGCCAGGCCACACCTGTGCCCCAAGCTGGCATGCATTTGTGCCCACCGAGGCAGCAC
CAGACCTCCTTTTGGAACAGCACCACCTTCGCAGGGTGAGGAGACAGACTCAGAGCCCAGACCC
CAGGCTTAAGCGGGATGTAGTAACAGAGACGAAAATTGTCGAACTGGTGATTGTGGCTGATAAT
TCAGAGGTCAGGAAGTACCCTGACTTCCAACAACTGCTGAACCGAACACTAGAAGTGGCCCTTC
TGCTAGACACATTCTTCCAGCCCCTGAATGTCCGGGTAGCACTTGTGGGCCTAGAGGCATGGAC
CCAGCGCGACCTGATAGAGATGAGCTCCAACCCAGCTGTCCTGCTAGACAACTTCCTCCGCTGG
CGCCGGACAGACTTGCTGCCTCGACTGCCCCATGATAGTGCCCAGCTTGTGACTGTTACTTCCT
TCTCTGGGCCCATGGTGGGCATGGCCATTCAGAATTCCATCTGTTCTCCTGACTTCTCGGGAGG
TGTGAATATGGACCACTCGACAAGCATCTTAGGAGTTGCCTCCTCCATTGCCCACGAGTTGGGT
CACAGCCTGGGCCTAGACCACGATTCACCTGGGAACAGTTGTCCCTGTCCAGGTCCAGCCCCAG
CCAAGAGCTGCATCATGGAGGCCTCCACAGATTTCCTACCAGGTCTGAACTTCAGCAACTGCAG
CCGATGGGCCCTGGAAAAAGCCCTCCTAGATGGGATGGGCAGCTGCCTCTTTGAATGGCCACCC
AGCCGGGCCCCTATGTCCTCTTTGTGTGGAAATATGTTTGTGGACCCTGGAGAGCAGTGTGACT
GTGGCTTCCCAGATGAGTGCACTGATCCTTGCTGTGACTATTTTACCTGCCAGCTGAGGCCGGG
AGCACAGTGTGCATCTGACGGACCCTGTTGTCAAAACTGCAAGTTACAGCCAGCTGGCTGGCAG
TGCCGCCTTCCCACAGACGATTGCGATTTGCCTGAGTTCTGCCTAGGAGATAGCTCTCAGTGCC
CCCCTGACATCAGGCTTGGGGACGGTGAGCCTTGTGCTAGTGGAGAGGCTGTGTGTATGCATGG
GCGCTGTGCCTCCTACACCCGGCAGTGCCAGTCGCTTTGGGGACCTGGGGCCCAGCCTGCTGCA
CCACTTTGCCTCCAAACAGCCAACACTCGGGGTAATGCCTTTGGGAGCTGTGGGCGCAGCCCCA
GTGGTAGCTACATGCCTTGCAACCTTAGAGATGCCATTTGTGGGCAACTACAGTGCCAGTGGGG
TAGGAACCAGCCTCTGCTGGGCTCAGTCCAAGATCAGCTCTCGGAGGTCCTGGAAGCCAATGGG
ACACAATTAAACTGCAGCTGGGTAGATCTGGACTTGGGCAATGATGTGGCCCAGCCTCTCCTGG
CTCTACCTGGCACTGCCTGTGGCCCTGGCCTGGTGTGCATCGGCCATCGATGCCAGCCTGTGGA
TCTCCTGGGAGCACAGGAATGCCGCAGCAAATGCCATGGCCATGGGGTCTGCGACAGCAGCAGG
CACTGCCACTGTGACGAGGGCTGGGCACCTCCTGATTGCATGACCCAGCTCAGAGCAACCAGCT
CCCTGACCACAGGCCTGCTCCTCAGCCTCCTGTTGTTATTGGTCCTCGTACTACTTGGTGCCAG
CTACTGGTACCGTGCCCGCCTGCATCAGCGGCTCTGCCAGCTCAAGGGATCCAGCTGCCAATAT
AGGGCAGCCCAATCCGGTCCTCCTGAGCGACCAGGACCTCCACAGAGGGCACAGCAGATGCCAG
GCACTAAGGCTGAGCTGGCTGACCGATCCAATCCCCCCACTCGCCCTCTGCCCGCTGACCCTGT
GGTGTGGCGCCCAAAGCCTCAGGGGCCTACCAAACCCCCACCCCCAAGAAAGCCACTGCCCGCC
AACCCACAGGGCCGGCCCCCGCTGGGTGACCTGCCTGGCCCAGGAGATGGAAGCTTGCAGCTGG
TAGTGCCTTCCAGGCCTGCCCCACCACCCCCAGCAGCATCTTCGCTCTACCTCTGACCCCTCGA
GATTCGGCTGTCTCCTGCTCAGTTCTAGGACTTAAAGTGGAACCTCTGTCTGAATCTCCCACAA
AACACTAGAGAAGCAGAAGCTTAGACAATATGGCATCCAGCCCTAAAGAACCACCAGGCGCTGT
TCAGTAGTACCTGGGACCCACTGAATTACCTGCAGCTGAGTGTTGGGAAGGGGCTGGGGCTGGA
GTAGGTGGTGGAAGGACGGGAATGTGGTCTGTCTCTGCTCTGTTGTAATAAATGTGAGGTCTTG
GAATA

hide sequence

RefSeq Acc Id:

XM_017591056 ⟹ XP_017446545

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	177,053,217 - 177,062,866 (-)	NCBI
mRatBN7.2	2	174,755,487 - 174,765,136 (-)	NCBI
Rnor_6.0	2	188,662,680 - 188,672,337 (-)	NCBI

Sequence:

show sequence

TAGCCGGGGCGGGGCGGGGCCTAGTGGCTGTGCTGCGCGGAGCTGGTGTCCGACGCGGCCCCGG
CTGCTCCTCCACGCTTAGCCCCGCACCTGCTGCCCTCGTCCGGCCCGGAGCTCCGCGGCCATGC
GGCTGGCGCTGCTCTGGGCCCTGGGACTCCTGGGCGCGGGCAGCCCTCGGCCCTCCCCGCCGCT
GCCAAATATAGGAGGTACTGAGGAAGAGCAGCAAGCCAGCCCAGAGAGGACCCAGAGTAGATCC
TTGGAGAACCAGGTTGTTCAGGACAGCCCCCCAATTAACCTAACAGAAGTGCTTCAGACTGGTT
TACCTGAGACCCTGAGGATTGGATTGGAGCTGGACGGTGAGAATCATATCCTGGAGCTTCAACA
GAATAGAGATCTGGTCCCTGGCCGCCCGACTCTGGTGTGGTATCAGCCTGACGGCACCCGAATG
GTCAGCGAGGGGCACAGTCTGGAAAACTGCTGCTATCGAGGACGAGTTCAGGGCCGCCCCAGCT
CTTGGGTCTCCCTCTGTGCCTGCTCTGGGATCAGGGGGCTGGTAGTCCTGTCCCCTGAGAGAAG
CTATACACTGGAGCTGGGACCTGGAGACCTTCAGCGTCCTCTCATTGTTTCTCGGATCCAAGAC
CTCCTCTTGCCAGGCCACACCTGTGCCCCAAGCTGGCATGCATTTGTGCCCACCGAGGCAGCAC
CAGACCTCCTTTTGGAACAGCACCACCTTCGCAGGGTGAGGAGACAGACTCAGAGCCCAGACCC
CAGGCTTAAGCGGGATGTAGTAACAGAGACGAAAATTGTCGAACTGGTGATTGTGGCTGATAAT
TCAGAGGTCAGGAAGTACCCTGACTTCCAACAACTGCTGAACCGAACACTAGAAGTGGCCCTTC
TGCTAGACACATTCTTCCAGCCCCTGAATGTCCGGGTAGCACTTGTGGGCCTAGAGGCATGGAC
CCAGCGCGACCTGATAGAGATGAGCTCCAACCCAGCTGTCCTGCTAGACAACTTCCTCCGCTGG
CGCCGGACAGACTTGCTGCCTCGACTGCCCCATGATAGTGCCCAGCTTGTGACTGTTACTTCCT
TCTCTGGGCCCATGGTGGGCATGGCCATTCAGAATTCCATCTGTTCTCCTGACTTCTCGGGAGG
TGTGAATATGGACCACTCGACAAGCATCTTAGGAGTTGCCTCCTCCATTGCCCACGAGTTGGGT
CACAGCCTGGGCCTAGACCACGATTCACCTGGGAACAGTTGTCCCTGTCCAGGTCCAGCCCCAG
CCAAGAGCTGCATCATGGAGGCCTCCACAGATTTCCTACCAGGTCTGAACTTCAGCAACTGCAG
CCGATGGGCCCTGGAAAAAGCCCTCCTAGATGGGATGGGCAGCTGCCTCTTTGAATGGCCACCC
AGCCGGGCCCCTATGTCCTCTTTGTGTGGAAATATGTTTGTGGACCCTGGAGAGCAGTGTGACT
GTGGCTTCCCAGATGAGTGCACTGATCCTTGCTGTGACTATTTTACCTGCCAGCTGAGGCCGGG
AGCACAGTGTGCATCTGACGGACCCTGTTGTCAAAACTGCAAGTTACAGCCAGCTGGCTGGCAG
TGCCGCCTTCCCACAGACGATTGCGATTTGCCTGAGTTCTGCCTAGGAGATAGCTCTCAGTGCC
CCCCTGACATCAGGCTTGGGGACGGTGAGCCTTGTGCTAGTGGAGAGGCTGTGTGTATGCATGG
GCGCTGTGCCTCCTACACCCGGCAGTGCCAGTCGCTTTGGGGACCTGGGGCCCAGCCTGCTGCA
CCACTTTGCCTCCAAACAGCCAACACTCGGGGTAATGCCTTTGGGAGCTGTGGGCGCAGCCCCA
GTGGTAGCTACATGCCTTGCAACCTTAGAGATGCCATTTGTGGGCAACTACAGTGCCAGTGGGG
TAGGAACCAGCCTCTGCTGGGCTCAGTCCAAGATCAGCTCTCGGAGGTCCTGGAAGCCAATGGG
ACACAATTAAACTGCAGCTGGGTAGATCTGGACTTGGGCAATGATGTGGCCCAGCCTCTCCTGG
CTCTACCTGGCACTGCCTGTGGCCCTGGCCTGGTGTGCATCGGCCATCGATGCCAGCCTGTGGA
TCTCCTGGGAGCACAGGAATGCCGCAGCAAATGCCATGGCCATGGGGTCTGCGACAGCAGCAGG
CACTGCCACTGTGACGAGGGCTGGGCACCTCCTGATTGCATGACCCAGCTCAGAGCAACCAGCT
CCCTGACCACAGGCCTGCTCCTCAGCCTCCTGTTGTTATTGGTCCTCGTACTACTTGGTGCCAG
CTACTGGTACCGTGCCCGCCTGCATCAGCGGCTCTGCCAGCTCAAGGGATCCAGCTGCCAATAT
AGGGCAGCCCAATCCGGTCCTCCTGAGCGACCAGGACCTCCACAGAGGGCACAGCAGATGCCAG
GCACTAAGCAAGCTAATGTCAGCTTTCCAGTACCCCCCTCCAGGCCGCTGCCACCTAACCCCGT
GCCCAAGAAACTCCAGTGGTGTTCTTCATTAGGGGACCAGGGTGCCCCCTCAGCCTTCAAAGTC
CCAGAAGCAGCAAAGGGTGAGCCTCCCGCTATGGTCTCTACTACCACCTGGTGGTCAATAGTAG
GACTACAGCCATCAGGGGCTCCACGATTGATCCGCACCTTCCTTCCCCGAGCCTCCTGTCAATT
GGCAAGCACCCAAAGCCCTCTGCGCATGCTCCCATTTTCCCTCGAGCCCCCTGGCTGACTTTGC
ATGTTGACCCCTGGGTAGCGTCTGCATGCTCACTTCCTTTGACCGCGCTTTCGATCCACCGCTC
CTCT

hide sequence

RefSeq Acc Id:

XM_063282423 ⟹ XP_063138493

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	177,053,184 - 177,062,866 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001386057	(Get FASTA)	NCBI Sequence Viewer
	NP_001386058	(Get FASTA)	NCBI Sequence Viewer
	NP_064704	(Get FASTA)	NCBI Sequence Viewer
	XP_006232806	(Get FASTA)	NCBI Sequence Viewer
	XP_008759425	(Get FASTA)	NCBI Sequence Viewer
	XP_008759426	(Get FASTA)	NCBI Sequence Viewer
	XP_017446545	(Get FASTA)	NCBI Sequence Viewer
	XP_063138493	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH61796	(Get FASTA)	NCBI Sequence Viewer
	CAA72278	(Get FASTA)	NCBI Sequence Viewer
	CAB61762	(Get FASTA)	NCBI Sequence Viewer
	EDM00639	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000027970.2
	ENSRNOP00000039351.2
	ENSRNOP00000091249.1
GenBank Protein	Q9QYV0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_064704 ⟸ NM_020308
- Peptide Label:	isoform 3 precursor
- UniProtKB:	A6J6F0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRLALLWALGLLGAGSPRPSPPLPNIGGTEEEQQASPERTQSRSLENQVVQDSPPINLTEVLQT GLPETLRIGLELDGENHILELQQNRDLVPGRPTLVWYQPDGTRMVSEGHSLENCCYRGRVQGRP SSWVSLCACSGIRGLVVLSPERSYTLELGPGDLQRPLIVSRIQDLLLPGHTCAPSWHAFVPTEA APDLLLEQHHLRRLKRDVVTETKIVELVIVADNSEVRKYPDFQQLLNRTLEVALLLDTFFQPLN VRVALVGLEAWTQRDLIEMSSNPAVLLDNFLRWRRTDLLPRLPHDSAQLVTVTSFSGPMVGMAI QNSICSPDFSGGVNMDHSTSILGVASSIAHELGHSLGLDHDSPGNSCPCPGPAPAKSCIMEAST DFLPGLNFSNCSRWALEKALLDGMGSCLFEWPPSRAPMSSLCGNMFVDPGEQCDCGFPDECTDP CCDYFTCQLRPGAQCASDGPCCQNCKLQPAGWQCRLPTDDCDLPEFCLGDSSQCPPDIRLGDGE PCASGEAVCMHGRCASYTRQCQSLWGPGAQPAAPLCLQTANTRGNAFGSCGRSPSGSYMPCNLR DAICGQLQCQWGRNQPLLGSVQDQLSEVLEANGTQLNCSWVDLDLGNDVAQPLLALPGTACGPG LVCIGHRCQPVDLLGAQECRSKCHGHGVCDSSRHCHCDEGWAPPDCMTQLRATSSLTTGLLLSL LLLLVLVLLGASYWYRARLHQRLCQLKGSSCQYRAAQSGPPERPGPPQRAQQMPGTKPQGPTKP PPPRKPLPANPQGRPPLGDLPGPGDGSLQLVVPSRPAPPPPAASSLYL hide sequence

RefSeq Acc Id:	XP_006232806 ⟸ XM_006232744
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AF83 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRLALLWALGLLGAGSPRPSPPLPNIGGTEEEQQASPERTQSRSLENQVVQDSPPINLTEVLQT GLPETLRIGLELDGENHILELQQNRDLVPGRPTLVWYQPDGTRMVSEGHSLENCCYRGRVQGRP SSWVSLCACSGIRGLVVLSPERSYTLELGPGDLQRPLIVSRIQDLLLPGHTCAPSWHAFVPTEA APDLLLEQHHLRRLKRDVVTETKIVELVIVADNSEVRKYPDFQQLLNRTLEVALLLDTFFQPLN VRVALVGLEAWTQRDLIEMSSNPAVLLDNFLRWRRTDLLPRLPHDSAQLVTVTSFSGPMVGMAI QNSICSPDFSGGVNMDHSTSILGVASSIAHELGHSLGLDHDSPGNSCPCPGPAPAKSCIMEAST DFLPGLNFSNCSRWALEKALLDGMGSCLFEWPPSRAPMSSLCGNMFVDPGEQCDCGFPDECTDP CCDYFTCQLRPGAQCASDGPCCQNCKLQPAGWQCRLPTDDCDLPEFCLGDSSQCPPDIRLGDGE PCASGEAVCMHGRCASYTRQCQSLWGPGAQPAAPLCLQTANTRGNAFGSCGRSPSGSYMPCNLR DAICGQLQCQWGRNQPLLGSVQDQLSEVLEANGTQLNCSWVDLDLGNDVAQPLLALPGTACGPG LVCIGHRCQPVDLLGAQECRSKCHGHGVCDSSRHCHCDEGWAPPDCMTQLRATSSLTTGLLLSL LLLLVLVLLGASYWYRARLHQRLCQLKGSSCQYRAAQSGPPERPGPPQRAQQMPGTKAELADRS NPPTRPLPADPVVWRPKPQGPTKPPPPRKPLPANPQGRPPLGDLPGPGDGSLQLVVPSRPAPPP PAASSLYL hide sequence

RefSeq Acc Id:

XP_008759426 ⟸ XM_008761204

- Peptide Label:

isoform X3

- Sequence:

show sequence

MRLALLWALGLLGAGSPRPSPPLPNIGGTEEEQQASPERTQSRSLENQVVQDSPPINLTEVLQT
GLPETLRIGLELDGENHILELQQNRDLVPGRPTLVWYQPDGTRMVSEGHSLENCCYRGRVQGRP
SSWVSLCACSGIRGLVVLSPERSYTLELGPGDLQRPLIVSRIQDLLLPGHTCAPSWHAFVPTEA
APDLLLEQHHLRRVRRQTQSPDPRLKRDVVTETKIVELVIVADNSEVRKYPDFQQLLNRTLEVA
LLLDTFFQPLNVRVALVGLEAWTQRDLIEMSSNPAVLLDNFLRWRRTDLLPRLPHDSAQLVTVT
SFSGPMVGMAIQNSICSPDFSGGVNMDHSTSILGVASSIAHELGHSLGLDHDSPGNSCPCPGPA
PAKSCIMEASTDFLPGLNFSNCSRWALEKALLDGMGSCLFEWPPSRAPMSSLCGNMFVDPGEQC
DCGFPDECTDPCCDYFTCQLRPGAQCASDGPCCQNCKLQPAGWQCRLPTDDCDLPEFCLGDSSQ
CPPDIRLGDGEPCASGEAVCMHGRCASYTRQCQSLWGPGAQPAAPLCLQTANTRGNAFGSCGRS
PSGSYMPCNLRDAICGQLQCQWGRNQPLLGSVQDQLSEVLEANGTQLNCSWVDLDLGNDVAQPL
LALPGTACGPGLVCIGHRCQPVDLLGAQECRSKCHGHGVCDSSRHCHCDEGWAPPDCMTQLRAT
SSLTTGLLLSLLLLLVLVLLGASYWYRARLHQRLCQLKGSSCQYRAAQSGPPERPGPPQRAQQM
PGTKAELADRSNPPTRPLPADPVVWRPKPQGPTKPPPPRKPLPANPQGRPPLGDLPGPGDGSLQ
LVVPSRPAPPPPAASSLYL

hide sequence

RefSeq Acc Id:

XP_008759425 ⟸ XM_008761203

- Peptide Label:

isoform X1

- Sequence:

show sequence

MRLALLWALGLLGAGSPRPSPPLPNIGGTEEEQQASPERTQSRSLENQVVQDSPPINLTEVLQT
GLPETLRIGLELDGENHILELQQNRDLVPGRPTLVWYQPDGTRMVSEGHSLENCCYRGRVQGRP
SSWVSLCACSGIRGLVVLSPERSYTLELGPGDLQRPLIVSRIQDLLLPGHTCAPSWHAFVPTEA
APDLLLEQHHLRRVRRQTQSPDPRLKRDVVTETKIVELVIVADNSEVRKYPDFQQLLNRTLEVA
LLLDTFFQPLNVRVALVGLEAWTQRDLIEMSSNPAVLLDNFLRWRRTDLLPRLPHDSAQLVTVT
SFSGPMVGMAIQNSICSPDFSGGVNMDHSTSILGVASSIAHELGHSLGLDHDSPGNSCPCPGPA
PAKSCIMEASTDFLPGLNFSNCSRWALEKALLDGMGSCLFEWPPSRAPMSSLCGNMFVDPGEQC
DCGFPDECTDPCCDYFTCQLRPGAQCASDGPCCQNCKLQPAGWQCRLPTDDCDLPEFCLGDSSQ
CPPDIRLGDGEPCASGEAVCMHGRCASYTRQCQSLWGPGAQPAAPLCLQTANTRGNAFGSCGRS
PSGSYMPCNLRDAICGQLQCQWGRNQPLLGSVQDQLSEVLEANGTQLNCSWVDLDLGNDVAQPL
LALPGTACGPGLVCIGHRCQPVDLLGAQECRSKCHGHGVCDSSRHCHCDEGWAPPDCMTQLRAT
SSLTTGLLLSLLLLLVLVLLGASYWYRARLHQRLCQLKGSSCQYRAAQSGPPERPGPPQRAQQM
PGTKQANVSFPVPPSRPLPPNPVPKKLQAELADRSNPPTRPLPADPVVWRPKPQGPTKPPPPRK
PLPANPQGRPPLGDLPGPGDGSLQLVVPSRPAPPPPAASSLYL

hide sequence

RefSeq Acc Id:

XP_017446545 ⟸ XM_017591056

- Peptide Label:

isoform X2

- Sequence:

show sequence

MRLALLWALGLLGAGSPRPSPPLPNIGGTEEEQQASPERTQSRSLENQVVQDSPPINLTEVLQT
GLPETLRIGLELDGENHILELQQNRDLVPGRPTLVWYQPDGTRMVSEGHSLENCCYRGRVQGRP
SSWVSLCACSGIRGLVVLSPERSYTLELGPGDLQRPLIVSRIQDLLLPGHTCAPSWHAFVPTEA
APDLLLEQHHLRRVRRQTQSPDPRLKRDVVTETKIVELVIVADNSEVRKYPDFQQLLNRTLEVA
LLLDTFFQPLNVRVALVGLEAWTQRDLIEMSSNPAVLLDNFLRWRRTDLLPRLPHDSAQLVTVT
SFSGPMVGMAIQNSICSPDFSGGVNMDHSTSILGVASSIAHELGHSLGLDHDSPGNSCPCPGPA
PAKSCIMEASTDFLPGLNFSNCSRWALEKALLDGMGSCLFEWPPSRAPMSSLCGNMFVDPGEQC
DCGFPDECTDPCCDYFTCQLRPGAQCASDGPCCQNCKLQPAGWQCRLPTDDCDLPEFCLGDSSQ
CPPDIRLGDGEPCASGEAVCMHGRCASYTRQCQSLWGPGAQPAAPLCLQTANTRGNAFGSCGRS
PSGSYMPCNLRDAICGQLQCQWGRNQPLLGSVQDQLSEVLEANGTQLNCSWVDLDLGNDVAQPL
LALPGTACGPGLVCIGHRCQPVDLLGAQECRSKCHGHGVCDSSRHCHCDEGWAPPDCMTQLRAT
SSLTTGLLLSLLLLLVLVLLGASYWYRARLHQRLCQLKGSSCQYRAAQSGPPERPGPPQRAQQM
PGTKQANVSFPVPPSRPLPPNPVPKKLQWCSSLGDQGAPSAFKVPEAAKGEPPAMVSTTTWWSI
VGLQPSGAPRLIRTFLPRASCQLASTQSPLRMLPFSLEPPG

hide sequence

Ensembl Acc Id:

ENSRNOP00000027970 ⟸ ENSRNOT00000027970

Ensembl Acc Id:

ENSRNOP00000039351 ⟸ ENSRNOT00000050868

Ensembl Acc Id:

ENSRNOP00000091249 ⟸ ENSRNOT00000105677

RefSeq Acc Id:	NP_001386057 ⟸ NM_001399128
- Peptide Label:	isoform 1 precursor
- UniProtKB:	Q9QYV0 (UniProtKB/Swiss-Prot), Q6P779 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	NP_001386058 ⟸ NM_001399129
- Peptide Label:	isoform 2 precursor

RefSeq Acc Id:	XP_063138493 ⟸ XM_063282423
- Peptide Label:	isoform X5

Protein Domains

Disintegrin EGF-like Peptidase M12B

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9QYV0-F1-model_v2	AlphaFold	Q9QYV0	1-864	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691486

Promoter ID:

EPDNEW_R1996

Type:

initiation region

Name:

Adam15_1

Description:

ADAM metallopeptidase domain 15

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	188,672,315 - 188,672,375	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620402	AgrOrtholog
BioCyc Gene	G2FUF-52412	BioCyc
Ensembl Genes	ENSRNOG00000020590	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000027970.5	UniProtKB/Swiss-Prot
	ENSRNOT00000050868.5	UniProtKB/Swiss-Prot
	ENSRNOT00000105677.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.390.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	4.10.70.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Galactose-binding domain-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:5597908	IMAGE-MGC_LOAD
InterPro	ADAM_Cys-rich	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Disintegrin_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Disintegrin_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF-like_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MetalloPept_cat_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Peptidase_M12B	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Peptidase_M12B_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Reprolysin_adamalysin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:57025	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:72471	IMAGE-MGC_LOAD
NCBI Gene	57025	ENTREZGENE
PANTHER	ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR11905:SF130	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	ADAM_CR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Disintegrin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Pep_M12B_propep	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Reprolysin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Adam15	PhenoGen
PROSITE	ADAM_MEPRO	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DISINTEGRIN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF_3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC_PROTEASE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000020590	RatGTEx
SMART	ACR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DISIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Metalloproteases ('zincins'), catalytic domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF57552	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6AF83	ENTREZGENE, UniProtKB/TrEMBL
	A6J6F0	ENTREZGENE, UniProtKB/TrEMBL
	ADA15_RAT	UniProtKB/Swiss-Prot
	Q6P779	ENTREZGENE
	Q9QYV0	ENTREZGENE
UniProt Secondary	Q6P779	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-02-21	Adam15	ADAM metallopeptidase domain 15	Adam15	a disintegrin and metallopeptidase domain 15 (metargidin)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Adam15	a disintegrin and metallopeptidase domain 15 (metargidin)		a disintegrin and metalloproteinase domain 15 (metargidin)	Name updated	1299863	APPROVED
2004-09-10	Adam15	a disintegrin and metalloproteinase domain 15 (metargidin)		a disintegrin and metalloproteinase domain (ADAM) 15 (metargidin)	Name updated	1299863	APPROVED
2002-08-07	Adam15	a disintegrin and metalloproteinase domain (ADAM) 15 (metargidin)			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains a disintegrin and a metalloprotease domain	632016
gene_expression	expressed in Schwann cells, brain, spinal cord and endothelial cells of peripheral nerve	632016
gene_expression	differentially expressed during Wallerian degeneration and nerve regeneration	632016
gene_protein	85 kDa	632016

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar