Tgfb1i1 (transforming growth factor beta 1 induced transcript 1) - Rat Genome Database

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Gene: Tgfb1i1 (transforming growth factor beta 1 induced transcript 1) Rattus norvegicus
Analyze
Symbol: Tgfb1i1
Name: transforming growth factor beta 1 induced transcript 1
RGD ID: 620173
Description: Enables I-SMAD binding activity. Predicted to be involved in positive regulation of epithelial to mesenchymal transition; positive regulation of nitrogen compound metabolic process; and positive regulation of transforming growth factor beta receptor signaling pathway. Predicted to act upstream of or within several processes, including epithelial cell differentiation; morphogenesis of embryonic epithelium; and negative regulation of fat cell differentiation. Predicted to be located in cytosol; focal adhesion; and intracellular membrane-bounded organelle. Orthologous to human TGFB1I1 (transforming growth factor beta 1 induced transcript 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: androgen receptor-associated protein of 55 kDa; Ara55; Hic-5; hydrogen peroxide-inducible clone 5 protein; transforming growth factor beta-1-induced transcript 1 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21182,828,553 - 182,835,465 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,828,544 - 182,837,080 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1191,179,152 - 191,185,949 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01198,365,243 - 198,372,040 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01191,035,717 - 191,042,532 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01199,664,039 - 199,670,970 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1199,664,173 - 199,670,961 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01206,710,120 - 206,716,917 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,504,715 - 187,511,512 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11187,656,500 - 187,660,841 (+)NCBI
Celera1180,474,643 - 180,481,440 (+)NCBICelera
Cytogenetic Map1q37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(R)-lipoic acid  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-tribromophenol  (ISO)
2-methylcholine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-phenylprop-2-enal  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
8-Br-cAMP  (ISO)
9-cis-retinoic acid  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bleomycin A2  (EXP)
buta-1,3-diene  (ISO)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
caffeine  (ISO)
chlordecone  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cyproterone acetate  (ISO)
D-glucose  (ISO)
daidzein  (ISO)
decabromodiphenyl ether  (ISO)
dibutyl phthalate  (EXP,ISO)
diethylstilbestrol  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
fucoxanthin  (ISO)
gentamycin  (EXP)
glucose  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lipoic acid  (ISO)
mancozeb  (ISO)
menadione  (ISO)
mercury dibromide  (ISO)
N-acetyl-L-cysteine  (ISO)
nickel subsulfide  (EXP)
niclosamide  (ISO)
nitrofen  (EXP)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylephrine  (EXP)
phenylmercury acetate  (ISO)
potassium dichromate  (ISO)
quercetin  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
sodium fluoride  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
thioacetamide  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vanillin  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Identification and characterization of hic-5/ARA55 as an hsp27 binding protein. Jia Y, etal., J Biol Chem 2001 Oct 26;276(43):39911-8.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Smad7 is inactivated through a direct physical interaction with the LIM protein Hic-5/ARA55. Wang H, etal., Oncogene. 2008 Nov 20;27(54):6791-805. doi: 10.1038/onc.2008.291. Epub 2008 Sep 1.
Additional References at PubMed
PMID:10075738   PMID:11784865   PMID:15561701   PMID:15687259   PMID:16624805   PMID:17550607   PMID:18083901   PMID:19540241   PMID:19855388   PMID:20551380   PMID:21423176   PMID:21996749  
PMID:23508044   PMID:26405299   PMID:26759173   PMID:37156857  


Genomics

Comparative Map Data
Tgfb1i1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21182,828,553 - 182,835,465 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,828,544 - 182,837,080 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1191,179,152 - 191,185,949 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01198,365,243 - 198,372,040 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01191,035,717 - 191,042,532 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01199,664,039 - 199,670,970 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1199,664,173 - 199,670,961 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01206,710,120 - 206,716,917 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,504,715 - 187,511,512 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11187,656,500 - 187,660,841 (+)NCBI
Celera1180,474,643 - 180,481,440 (+)NCBICelera
Cytogenetic Map1q37NCBI
TGFB1I1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381631,472,152 - 31,477,960 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1631,471,585 - 31,477,960 (+)EnsemblGRCh38hg38GRCh38
GRCh371631,483,473 - 31,489,281 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361631,390,985 - 31,396,781 (+)NCBINCBI36Build 36hg18NCBI36
Build 341631,392,026 - 31,396,781NCBI
Celera1628,819,110 - 28,824,915 (-)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1629,043,677 - 29,049,482 (+)NCBIHuRef
CHM1_11632,802,125 - 32,807,930 (+)NCBICHM1_1
T2T-CHM13v2.01631,859,540 - 31,865,348 (+)NCBIT2T-CHM13v2.0
Tgfb1i1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,845,963 - 127,852,884 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7127,845,984 - 127,854,871 (+)EnsemblGRCm39 Ensembl
GRCm387128,246,812 - 128,255,699 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7128,246,812 - 128,255,699 (+)EnsemblGRCm38mm10GRCm38
MGSCv377135,390,385 - 135,397,226 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367128,038,019 - 128,044,860 (+)NCBIMGSCv36mm8
Celera7128,082,355 - 128,089,196 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map770.07NCBI
Tgfb1i1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554938,309,505 - 8,315,668 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554938,309,480 - 8,315,378 (+)NCBIChiLan1.0ChiLan1.0
TGFB1I1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11639,480,365 - 39,488,773 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01623,487,561 - 23,493,452 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11631,842,437 - 31,848,327 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1631,842,437 - 31,848,327 (+)Ensemblpanpan1.1panPan2
TGFB1I1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1616,775,438 - 16,781,695 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl616,775,836 - 16,780,935 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,384,792 - 18,390,345 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0616,900,261 - 16,905,818 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl616,890,717 - 16,905,803 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1616,703,863 - 16,709,400 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0616,623,496 - 16,629,008 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0616,935,200 - 16,940,744 (-)NCBIUU_Cfam_GSD_1.0
Tgfb1i1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344125,683,623 - 125,689,224 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365438,347,329 - 8,353,051 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365438,347,343 - 8,352,909 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TGFB1I1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,090,116 - 17,099,020 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,093,275 - 17,099,204 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TGFB1I1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1528,172,246 - 28,178,265 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660681,261,904 - 1,268,458 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tgfb1i1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478214,471,415 - 14,476,914 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478214,471,427 - 14,476,792 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tgfb1i1
37 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:72
Count of miRNA genes:59
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000054980
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118944897199050459Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350581201284552Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1143506580212458660Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144017057197814409Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1144267353222987745Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1149448574221264292Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1151162512201278233Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512201278233Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1151162512201278233Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1151162512201278233Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1151646613196646613Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
2303622Vencon6Ventilatory control QTL 60.001respiration trait (VT:0001943)respiration rate (CMO:0000289)1154561505199561505Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1155866514200866514Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1156677124201278233Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1156677124218753816Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
61347Bp197Blood pressure QTL 1974.2arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1158633083203633083Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393213533942Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164747424209747424Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1164747424209747424Rat
2312558Glom17Glomerulus QTL 173.90.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1166532971191278129Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
619614Bp78Blood pressure QTL 780.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1169112897197261052Rat
619614Bp78Blood pressure QTL 780.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1169112897197261052Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1169537671214537671Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1169537671214537671Rat
1358294Bw37Body weight QTL 3750.000011body mass (VT:0001259)body weight (CMO:0000012)1171310381216310381Rat
2293689Bss47Bone structure and strength QTL 477.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)1171629477216629477Rat
2293693Bss22Bone structure and strength QTL 2233.520.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1171629477216629477Rat
2300161Bmd43Bone mineral density QTL 438.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1171629477216629477Rat
2300174Bmd42Bone mineral density QTL 428.40.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)1171629477216629477Rat
2300187Bmd41Bone mineral density QTL 418.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1171629477216629477Rat
2293654Bss30Bone structure and strength QTL 3032.650.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1171629477216629477Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1171629477216629477Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1172609619217609619Rat
631214Bw61Body weight QTL613.40.0001intramuscular adipose amount (VT:0010044)intramuscular fat area (CMO:0001162)1173108781218108781Rat
631670Iddm10Insulin dependent diabetes mellitus QTL 101.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1174133260196383668Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1174133260219133260Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
1600380Niddm70Non-insulin dependent diabetes mellitus QTL 703.10.0008blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1176550523221550523Rat
10059600Bp378Blood pressure QTL 3783.080.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1176869060221869060Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
1558658Bw59Body weight QTL 593.50.0003body mass (VT:0001259)body weight (CMO:0000012)1178784622223784622Rat
2325725Eae31Experimental allergic encephalomyelitis QTL 31nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1178810256188377506Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1178810256240830002Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1302787Stl25Serum triglyceride level QTL 252.70.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1180359209210702199Rat
6903303Scl34Serum cholesterol QTL 342.50.0033blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)1180359209218108781Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1181133855226133855Rat
61378Bp43Blood pressure QTL 4322.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1181746937196383668Rat
724559Pancm1Pancreatic morphology QTL 17.1islet of Langerhans morphology trait (VT:0005215)pancreatic islet damage composite score (CMO:0001156)1181759564214537555Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1181829673224569684Rat
634312Bp143Blood pressure QTL 14330.0002arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1182623426219932796Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 33 10 10 5 10 62 20 32 11
Low 10 42 26 14 26 8 11 12 15 9 8
Below cutoff 5 5 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000054980   ⟹   ENSRNOP00000051863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1182,828,666 - 182,835,230 (+)Ensembl
Rnor_6.0 Ensembl1199,664,173 - 199,670,961 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097108   ⟹   ENSRNOP00000082835
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1182,829,358 - 182,835,218 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111476   ⟹   ENSRNOP00000081391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1182,829,362 - 182,834,906 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111679   ⟹   ENSRNOP00000080035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1182,829,817 - 182,835,226 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115394   ⟹   ENSRNOP00000082747
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1182,828,544 - 182,837,080 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115598   ⟹   ENSRNOP00000078945
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1182,829,523 - 182,837,080 (+)Ensembl
RefSeq Acc Id: NM_001191840   ⟹   NP_001178769
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,828,668 - 182,835,465 (+)NCBI
Rnor_6.01199,664,173 - 199,670,970 (+)NCBI
Rnor_5.01206,710,120 - 206,716,917 (+)NCBI
Celera1180,474,643 - 180,481,440 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006230349   ⟹   XP_006230411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,829,497 - 182,835,232 (+)NCBI
Rnor_6.01199,664,219 - 199,670,737 (+)NCBI
Rnor_5.01206,710,120 - 206,716,917 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006230350   ⟹   XP_006230412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,828,553 - 182,835,171 (+)NCBI
Rnor_6.01199,664,127 - 199,670,737 (+)NCBI
Rnor_5.01206,710,120 - 206,716,917 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589800   ⟹   XP_017445289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,828,576 - 182,835,171 (+)NCBI
Rnor_6.01199,664,039 - 199,670,737 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039092859   ⟹   XP_038948787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,829,563 - 182,835,232 (+)NCBI
RefSeq Acc Id: XM_039092864   ⟹   XP_038948792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,829,511 - 182,835,171 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001178769   ⟸   NM_001191840
- UniProtKB: Q99PD6 (UniProtKB/Swiss-Prot),   A6I9Z1 (UniProtKB/TrEMBL),   A0A8I5ZVH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006230412   ⟸   XM_006230350
- Peptide Label: isoform X4
- UniProtKB: A0A8L2QR72 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006230411   ⟸   XM_006230349
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZLR8 (UniProtKB/TrEMBL),   A0A8I5ZUP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445289   ⟸   XM_017589800
- Peptide Label: isoform X1
- UniProtKB: A6I9Z3 (UniProtKB/TrEMBL),   A0A8L2QR72 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000051863   ⟸   ENSRNOT00000054980
RefSeq Acc Id: XP_038948792   ⟸   XM_039092864
- Peptide Label: isoform X4
- UniProtKB: A0A8L2QR72 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948787   ⟸   XM_039092859
- Peptide Label: isoform X3
- UniProtKB: A6I9Z2 (UniProtKB/TrEMBL),   A0A8L2QR72 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000082835   ⟸   ENSRNOT00000097108
RefSeq Acc Id: ENSRNOP00000082747   ⟸   ENSRNOT00000115394
RefSeq Acc Id: ENSRNOP00000081391   ⟸   ENSRNOT00000111476
RefSeq Acc Id: ENSRNOP00000080035   ⟸   ENSRNOT00000111679
RefSeq Acc Id: ENSRNOP00000078945   ⟸   ENSRNOT00000115598
Protein Domains
LIM zinc-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99PD6-F1-model_v2 AlphaFold Q99PD6 1-461 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620173 AgrOrtholog
BioCyc Gene G2FUF-57307 BioCyc
Ensembl Genes ENSRNOG00000019965 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000051863.3 UniProtKB/TrEMBL
  ENSRNOP00000078945 ENTREZGENE
  ENSRNOP00000078945.1 UniProtKB/TrEMBL
  ENSRNOP00000080035 ENTREZGENE
  ENSRNOP00000080035.1 UniProtKB/TrEMBL
  ENSRNOP00000081391.1 UniProtKB/TrEMBL
  ENSRNOP00000082747 ENTREZGENE
  ENSRNOP00000082747.1 UniProtKB/TrEMBL
  ENSRNOP00000082835.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000054980.4 UniProtKB/TrEMBL
  ENSRNOT00000097108.1 UniProtKB/TrEMBL
  ENSRNOT00000111476.1 UniProtKB/TrEMBL
  ENSRNOT00000111679 ENTREZGENE
  ENSRNOT00000111679.1 UniProtKB/TrEMBL
  ENSRNOT00000115394 ENTREZGENE
  ENSRNOT00000115394.1 UniProtKB/TrEMBL
  ENSRNOT00000115598 ENTREZGENE
  ENSRNOT00000115598.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Paxillin_TGFB1I1_LIM_dom1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tgfb1i1/Leupaxin/TGFB1I1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:84574 UniProtKB/Swiss-Prot
NCBI Gene 84574 ENTREZGENE
PANTHER PAXILLIN UniProtKB/TrEMBL
  PAXILLIN-RELATED UniProtKB/TrEMBL
  PDZ AND LIM DOMAIN PROTEIN ZASP UniProtKB/Swiss-Prot
  PDZ AND LIM DOMAIN PROTEIN ZASP UniProtKB/Swiss-Prot
  PDZ AND LIM DOMAIN PROTEIN ZASP UniProtKB/TrEMBL
  PDZ AND LIM DOMAIN PROTEIN ZASP UniProtKB/TrEMBL
Pfam LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Paxillin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tgfb1i1 PhenoGen
PIRSF Leupaxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS PAXILLIN UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZLR8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZNV5_RAT UniProtKB/TrEMBL
  A0A8I5ZSV1_RAT UniProtKB/TrEMBL
  A0A8I5ZUP6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVH3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QR72 ENTREZGENE, UniProtKB/TrEMBL
  A6I9Z1 ENTREZGENE, UniProtKB/TrEMBL
  A6I9Z2 ENTREZGENE, UniProtKB/TrEMBL
  A6I9Z3 ENTREZGENE, UniProtKB/TrEMBL
  Q99PD6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Tgfb1i1  transforming growth factor beta 1 induced transcript 1      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Tgfb1i1  transforming growth factor beta 1 induced transcript 1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_homology 42% amino acid identity to the focal adhesion adaptor protein paxillin 634226