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Gene: Zmat3 (zinc finger, matrin type 3) Rattus norvegicus

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Symbol:

Zmat3

Name:

zinc finger, matrin type 3

RGD ID:

620134

Description:

Predicted to enable RNA binding activity and zinc ion binding activity. Involved in positive regulation of apoptotic process. Predicted to be located in nucleolus. Orthologous to human ZMAT3 (zinc finger matrin-type 3); PARTICIPATES IN p53 signaling pathway; INTERACTS WITH (+)-schisandrin B; 1-nitropropane; 17alpha-ethynylestradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

p53 target zinc finger protein; p53-activated gene 608; PAG608; Wig1; wild-type p53-induced gene 1; zinc finger matrin-type protein 3; zinc finger protein WIG-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZMAT3 (zinc finger matrin-type 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Zmat3 (zinc finger matrin type 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zmat3 (zinc finger matrin-type 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZMAT3 (zinc finger matrin-type 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZMAT3 (zinc finger matrin-type 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zmat3 (zinc finger matrin-type 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZMAT3 (zinc finger matrin-type 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZMAT3 (zinc finger matrin-type 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zmat3 (zinc finger matrin-type 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Zmat3 (zinc finger matrin-type 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Zmat3 (zinc finger matrin type 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZMAT3 (zinc finger matrin-type 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zmat3 (zinc finger, matrin-type 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1231	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG1231	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	dbf	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	dbf	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	zmat3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	zmat3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	117,034,517 - 117,066,141 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	117,034,517 - 117,065,294 (-)	Ensembl				GRCr8
mRatBN7.2	2	115,106,046 - 115,136,888 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	115,106,966 - 115,136,863 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	121,720,010 - 121,750,776 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	119,832,639 - 119,863,404 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	114,533,608 - 114,564,419 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	118,715,229 - 118,746,109 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	118,721,334 - 118,745,766 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	138,381,017 - 138,411,897 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	118,526,985 - 118,537,727 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	110,217,632 - 110,248,380 (-)	NCBI		Celera
RGSC_v3.1	2	118,471,951 - 118,482,689 (+)	NCBI
Cytogenetic Map	2	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Nerve Degeneration (ISO)

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-demecolcine (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

1-nitropropane (EXP)

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-diaminotoluene (EXP)

2,4-dinitrotoluene (EXP)

2,6-diaminotoluene (EXP)

2-acetamidofluorene (EXP,ISO)

2-nitro-p-phenylenediamine (EXP)

2-nitrofluorene (EXP)

2-nitropropane (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one (EXP)

4-acetylaminofluorene (EXP)

4-hydroxynon-2-enal (ISO)

4-hydroxyphenyl retinamide (ISO)

4-nitro-1,2-phenylenediamine (EXP)

5-aza-2'-deoxycytidine (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

actinomycin D (ISO)

adefovir pivoxil (ISO)

aflatoxin B1 (EXP,ISO)

amitrole (EXP)

ammonium chloride (EXP)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

belinostat (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

bicalutamide (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butan-1-ol (ISO)

cadmium dichloride (ISO)

camptothecin (ISO)

carbamazepine (ISO)

chloroacetaldehyde (ISO)

chromium(6+) (ISO)

chrysene (ISO)

cidofovir anhydrous (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

crocidolite asbestos (ISO)

daunorubicin (ISO)

dexamethasone (ISO)

diazinon (EXP)

dibenz[a,h]anthracene (ISO)

dieldrin (EXP)

diethylstilbestrol (EXP)

dimethyl sulfoxide (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

etoposide (ISO)

flavonoids (EXP)

folic acid (ISO)

formaldehyde (ISO)

furan (ISO)

gentamycin (EXP)

ibuprofen (ISO)

ifosfamide (ISO)

indometacin (ISO)

iron dichloride (ISO)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mercury dibromide (ISO)

methamphetamine (EXP,ISO)

methapyrilene (EXP,ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

mitoxantrone (ISO)

N-nitrosodiethylamine (ISO)

N-nitrosodimethylamine (EXP)

Nutlin-3 (ISO)

ochratoxin A (EXP,ISO)

okadaic acid (ISO)

paracetamol (ISO)

phenobarbital (EXP)

phenylmercury acetate (ISO)

piperonyl butoxide (EXP)

pirinixic acid (EXP)

piroxicam (ISO)

potassium bromate (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

quercetin (ISO)

resveratrol (ISO)

Salinomycin (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sulforaphane (ISO)

sunitinib (ISO)

temozolomide (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

tetraphene (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

tipifarnib (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

Triptolide (ISO)

trovafloxacin (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

DNA damage response (IEA)

positive regulation of apoptotic process (IDA)

protein transport (IEA)

Cellular Component

nucleolus (IEA)

nucleoplasm (ISO)

nucleus (IEA)

plasma membrane (ISO)

Molecular Function

metal ion binding (IEA)

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IEA)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

p53 signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	A novel p53-inducible gene, PAG608, encodes a nuclear zinc finger protein whose overexpression promotes apoptosis.	Israeli D, etal., EMBO J 1997 Jul 16;16(14):4384-92.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12196512	PMID:17234339	PMID:18242749	PMID:22658674

Genomics

Comparative Map Data

Zmat3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	117,034,517 - 117,066,141 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	117,034,517 - 117,065,294 (-)	Ensembl				GRCr8
mRatBN7.2	2	115,106,046 - 115,136,888 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	115,106,966 - 115,136,863 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	121,720,010 - 121,750,776 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	119,832,639 - 119,863,404 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	114,533,608 - 114,564,419 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	118,715,229 - 118,746,109 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	118,721,334 - 118,745,766 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	138,381,017 - 138,411,897 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	118,526,985 - 118,537,727 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	110,217,632 - 110,248,380 (-)	NCBI		Celera
RGSC_v3.1	2	118,471,951 - 118,482,689 (+)	NCBI
Cytogenetic Map	2	q24	NCBI

ZMAT3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	179,017,223 - 179,072,513 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	178,960,121 - 179,072,323 (-)	Ensembl			hg38	GRCh38
GRCh37	3	178,735,011 - 178,790,301 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	180,224,196 - 180,272,278 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	3	177,164,280 - 177,219,033 (-)	NCBI		Celera
Cytogenetic Map	3	q26.32	NCBI
HuRef	3	176,139,723 - 176,194,425 (-)	NCBI		HuRef
CHM1_1	3	178,697,897 - 178,752,559 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	181,821,051 - 181,876,314 (-)	NCBI		T2T-CHM13v2.0

Zmat3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	32,388,941 - 32,419,814 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	32,388,941 - 32,420,163 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	32,334,792 - 32,365,665 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	32,334,792 - 32,366,014 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	32,233,714 - 32,264,587 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	32,526,345 - 32,557,169 (-)	NCBI		MGSCv36	mm8
Celera	3	32,246,614 - 32,279,808 (-)	NCBI		Celera
Cytogenetic Map	3	A3	NCBI
cM Map	3	15.67	NCBI

Zmat3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	8,274,395 - 8,298,224 (-)	Ensembl
ChiLan1.0	NW_004955420	8,270,026 - 8,301,313 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZMAT3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	176,897,222 - 176,951,103 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	176,901,939 - 176,956,469 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	176,061,012 - 176,115,454 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	184,241,544 - 184,288,639 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	184,128,233 - 184,288,639 (-)	Ensembl			panPan2	panpan1.1

ZMAT3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	12,527,909 - 12,575,409 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	12,535,040 - 12,575,517 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	16,671,301 - 16,718,806 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	12,424,179 - 12,471,946 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	12,427,148 - 12,456,737 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	12,479,474 - 12,527,211 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	12,458,610 - 12,506,860 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	12,698,359 - 12,746,266 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zmat3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	109,118,097 - 109,154,057 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936566	4,070,693 - 4,095,868 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936566	4,066,683 - 4,102,643 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZMAT3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	117,117,626 - 117,147,604 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	117,113,272 - 117,147,639 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	126,270,158 - 126,280,510 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZMAT3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	10,374,093 - 10,434,212 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	10,373,904 - 10,430,759 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666063	19,255,951 - 19,318,869 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zmat3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	56,821,546 - 56,849,825 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	56,814,773 - 56,850,697 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zmat3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	122,644,891 - 122,670,068 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zmat3
151 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	438
Count of miRNA genes:	251
Interacting mature miRNAs:	309
Transcripts:	ENSRNOT00000013858
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	105628029	150628029	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1598865	Bp296	Blood pressure QTL 296	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	82947902	127947902	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1578772	Stresp14	Stress response QTL 14	5	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	2	84056790	132859658	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	40306867	124537199	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
2317886	Alcrsp23	Alcohol response QTL 23	2.4	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	95142371	140142371	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
2317058	Aia13	Adjuvant induced arthritis QTL 13	2.9		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	2	78269809	123269809	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	100807373	145807373	Rat
8662836	Vetf8	Vascular elastic tissue fragility QTL 8	0.66		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	106869825	151869825	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
2299162	Iddm32	Insulin dependent diabetes mellitus QTL 32	2.36		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	93602631	145807373	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	114384617	215381366	Rat
61392	Bp6	Blood pressure QTL 6	7		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	82214549	127214549	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	113746222	205135428	Rat
7488933	Bp368	Blood pressure QTL 368		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	104957381	149957381	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	114384617	215381366	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
1581552	Pur12	Proteinuria QTL 12	5.19	0.0009	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	2	114032149	150226270	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	114440891	159440891	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
1354594	Despr10	Despair related QTL 10		2e-06	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	116804572	161804572	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	61051541	143746880	Rat

Markers in Region

D2Wox57

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	115,111,296 - 115,111,453 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	118,720,476 - 118,720,632	NCBI	Rnor6.0
Rnor_5.0	2	138,386,264 - 138,386,420	UniSTS	Rnor5.0
RGSC_v3.4	2	118,532,324 - 118,532,480	UniSTS	RGSC3.4
Celera	2	110,222,879 - 110,223,035	UniSTS
Cytogenetic Map	2	q25	UniSTS

D1S2831

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	43,424,093 - 43,424,474 (+)	MAPPER	mRatBN7.2
mRatBN7.2	2	115,113,244 - 115,113,795 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	118,722,424 - 118,722,974	NCBI	Rnor6.0
Rnor_6.0	13	48,762,789 - 48,763,169	NCBI	Rnor6.0
Rnor_5.0	2	138,388,212 - 138,388,762	UniSTS	Rnor5.0
Rnor_5.0	13	53,833,597 - 53,833,977	UniSTS	Rnor5.0
RGSC_v3.4	13	44,857,679 - 44,858,059	UniSTS	RGSC3.4
Celera	13	43,760,802 - 43,761,180	UniSTS
Celera	2	110,224,827 - 110,225,377	UniSTS
Cytogenetic Map	2	q25	UniSTS
Cytogenetic Map	13	q13	UniSTS

RH133757

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	115,108,117 - 115,108,300 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	118,717,297 - 118,717,479	NCBI	Rnor6.0
Rnor_5.0	2	138,383,085 - 138,383,267	UniSTS	Rnor5.0
RGSC_v3.4	2	118,535,477 - 118,535,659	UniSTS	RGSC3.4
Celera	2	110,219,700 - 110,219,882	UniSTS
RH 3.4 Map	2	692.6	UniSTS
Cytogenetic Map	2	q25	UniSTS

AI101844

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	115,108,840 - 115,109,026 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	118,718,020 - 118,718,205	NCBI	Rnor6.0
Rnor_5.0	2	138,383,808 - 138,383,993	UniSTS	Rnor5.0
RGSC_v3.4	2	118,534,751 - 118,534,936	UniSTS	RGSC3.4
Celera	2	110,220,423 - 110,220,608	UniSTS
RH 3.4 Map	2	688.7	UniSTS
Cytogenetic Map	2	q25	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	91	59	6	355	191	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_022548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Y13148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013858 ⟹ ENSRNOP00000013858

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	115,111,153 - 115,136,606 (-)	Ensembl
Rnor_6.0 Ensembl	2	118,721,334 - 118,745,766 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103680 ⟹ ENSRNOP00000087283

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	117,034,517 - 117,065,294 (-)	Ensembl
mRatBN7.2 Ensembl	2	115,106,966 - 115,132,570 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113458 ⟹ ENSRNOP00000083964

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	115,106,966 - 115,136,863 (-)	Ensembl

RefSeq Acc Id:

NM_022548 ⟹ NP_071993

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	117,034,517 - 117,065,294 (-)	NCBI
mRatBN7.2	2	115,106,046 - 115,136,888 (-)	NCBI
Rnor_6.0	2	118,715,229 - 118,746,109 (-)	NCBI
Rnor_5.0	2	138,381,017 - 138,411,897 (-)	NCBI
RGSC_v3.4	2	118,526,985 - 118,537,727 (+)	RGD
Celera	2	110,217,632 - 110,248,380 (-)	RGD

Sequence:

show sequence

GCTTCCTGCAGCTGTTTCCTTGTGGCTCCGCTCCCACTGACTTTTGACAATCAATCTCCAGCAA
CGGAGCGGCCGATCGGCGGCGGTGAGCTCAGAAAGTGGTCGTGGAGCGGGCGGCGGCGCGCGGA
GTGGCGGGGCGGCTGCGGCCTGCCGGTTCCGGTTTGAAGACTCCGTCCATCCCCTGTCACCCAC
TGGATTATGCTCGTGGCTTTCCTGCCTGATGATTCTTTTGCAGCAGGTCTGGCTTCCTTTACCT
AACCGGCCTTCAACCTCTCCTCCTATGTCAGTGGCTGCCAGGTCCACTGGGACCTTGCAGCTCC
CGCCACAGAAGGCTTTTGGGCAGGAAGCATCCTTGCCTCTGGCAGGGGAAGAGGATTTAGCTAA
GAGAGGGGAGCCAGATTCTGCCCTGGAGGAGCTGTGTAAGCCCCTCTTCTGCAAACTCTGCAAT
GTCACCTTGAACTCCGCTCAGCAAGCCCAGGCCCACTATCAGGGTAAAAACCATGGCAAGAAAC
TCCGAAATTATTATGCAGCTAACAGCTGCCCTCCTCCAGCCAGGATGAGCAGCGTGGCGGAGCC
TGTAGCCACACCCCTCGTCCCTGTCCCTCCCCAGGTGGGCTCCTGCAAGCCAGGGGGCAGGGTG
ATCCTGGCCACAGAGAATGACTACTGTAAGCTGTGCGATGCCTCCTTCAGCTCCCCCGCGGTGG
CACAGGCGCACTACCAGGGGAAGAACCACGCCAAGAGACTTCGTCTGGCCGAAGCTCAGAGCCA
CTCATTCTCGGACTCTGCAGAGGCGGGGCAACGGCGGACCCGGAAAGAAGGGAGTGAATTTAAG
ATGGTGACCACCAGGAGGAATATGTATACAGTCCAGAGCAATTCAGGTCCTTACTTCAACGCCC
GTTCTCGGCAGAGGATCCCGCGAGATCTCGCCATGTGCGTTACTCCAAGTGGCCAGTTTTACTG
CTCGATGTGTAACGTCGGAGCTGGCGAAGAGGTGGAGTTCCGGCAGCATCTAGAGAGCAAGCAG
CACAAAAGCAAGGTGTCCGAGCAGCGGTACAGGAGCGAGATGGAGAACCTGGGCTACGTTCAGT
GATGGCCGCCCTCACAGAGAAGCCTGTCCTGCCTGTTTGCCTTCTGTCGACCTGCCTTGCTTTG
TGGTCCTCCATGCCTACATTCCTCATTCTTCTGCTTAGTGCGAGTAACCTGCAGTGGTGCCATG
AGCCGCCAGGTCGGGGTGGGCGAGGGAAGTGTTTCTCATAAGTCACGACGATGCTCTTTTGGGC
CAGCTGTGTTAAACAACTCACAGTTAAACAACTCACAGTGGTGTGTGAGCTTCCTGCCCCCTCA
GGTGTAACTTCTTATCTTGGCCAAGTTCTGGTTAAGCAGTAGTAGCCTGACTATTTAGAGCCAT
GAATATTTAAGGATGGCACCCACTTTTGCAGTTTTAGTTTTACGCACATTAGACGAATTGACTT
GAGTTCTTCTGATTATAGAGGAGACAGGTAAACGGAGATTCCTGTTTCCGGATGCTCCTGGGAA
CCATTACTACAGTGTGGTGTTGGTAAGATGTGCTGTCATGGTGTGTGCATGGGTCTCTCAGCAG
CCCCTGGTTCTCTGTGGCATAACTCTCCCTCCATAATTGACACATAGGTTTTCTTGAATTCATA
CACGTCCAGAATACTATGTTCTTGTGGACATGTAATGTCATCTCCAGCTGTGAACTGCACACAT
GTAATCCTATCTCCTCCTGTACTTAGATCAGCTTCTCCGCTCACCCCATTCTCTTGGCCCAGAT
GTGCCGGCAGTTTCGGAGACCCAGATTTGACTAATGAGTTGAAGATGGATATTCTTTTAGAAAA
TATATTTTCAGATGATTCAAGGAAATGCAAGGATGTGTTTGAGATTTCAATTTGGAATTCTATT
TTCACTGATGATTGTGTGAACTCCTGGGACAGTCATTCTATGGCTTTTTGACGATTGCATCCTG
ACACTGCCCTGACATGGGCGTGCCTGGAAGATACCCGTCTGCTGTTTCTTAAGTGGAAAATTTC
CTCTCTCTCTCTTCTTTTCTTTTCTTTCCTTTTCTTTTCTCTCTTTCCTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTAAGCTGATCAAGTTTCGGTGTCAT
TTCCAATAGAAAAACATACAAACATTGCATTTTCTTCTTTGCCTCCTTGAAGAGACTGAAAAAC
ACAGATGACTTTGGTGTCTAATGATTATAATGGGATTCTTATTTTTTAAATAAAAAGCCATAGT
GTATGTCTAGACGGACTGATGGAGTGTTATGTGAACTTGTGTTCACCGCGTGTCCTTTGTCCTC
CCCTTTTCCTTCCTGTGTGTGAGGCCAGCACGCCCGTGCTCTTAGGGAGGTGTGCTTCTGCAGA
AGGCTTAGAGCAAGCAGTATTTTGCACTATTTAACAAATACATATTTCACTCTTCGTGCCACCT
GAGAGTTCTCTGGGCAGAAGGAGAGGGAGGAAACGCTCAGCTCCCTCCTTTCCTTTTCTTGCTT
TAGAATAGTTGAGGACCCACAATGAAAGGTTAATTTTATGATTAGCTTCTGGAACAGTACCAGG
TTACTTTCTCCTGGTGAAATTGCTGGTTTCTGGAAAAGTAGAACTGTTCGGTTAAGCACTTGCC
CCTTACAAACAGAAGAAAGTACAGCATTAGTGTAAGATTTGATCTCCATTTGTAGTTCCTCATA
CCAAGGACCCCTCCTGTGGCCGTCTACAGAGCTGGTCAGTTTAGGGCAATTTAGGGTGTGTCTT
GTTAGCCGTTCGGTTGCTCATTTTGCTGCTCAATATAATTCTTCGGTAGACTTAAATATATTGT
TGGCCACTTGTTCTGTGATGGTTTAACAGTCTCATCTGTTTTCTCACAGGGTGTGTGTCTAAGT
GTTCCTGTGTTTGTGTCCCCAGTTTTATATGATATCCCAGAGACAGTTTCACCTCATCTTTATC
TCAGATAACCTTGAAAGATTCTGGGTATGGATTTACATTTTATAAAAGTTGACACTCATCTGCT
TTGAGTTTTTTCCTCTGGGAATCAAGTCAAAGGATATCCCCTTCCCCCATCCCCAAATGCTCTC
CTCCTGTATATACAGAAAACAGTGGACTTAAGGACTTGATGTGTTTTCAAGCCTCATGAATTCA
GGTTTCTAGTCTCCCAGTGCCCTTAATGGATGTTAGGGACGCATAAGTGTGGTTTCTTTTAGAG
TAAATGTTAGATTTCTGGTGTTATTTCTATACTCCTTTGAACTAGAGAGGGTGATGTGTTTGTT
TTATGACACTCTGGTACCAGGTTGCCTATGATAACTCCGTTTGTTTCCGACCTCTGGAAGTTTA
TAAGTAACGGCTATGGTCATTGTTGTGGATGTCTCAAACACTTAGAAGTTCCCTGACTGAGGCT
GTGTTGTCCTTACTTGTATTCAGTGGGTAGGGCAGAGGCTGTCAGAACTGCAATGGTGCAGTTT
CTCACTCTGTGAACTCTGTATGGACAGCGTCCCTTCCTTGTCTGGTCAAGCTTCGGTGGCATCT
GAGTCAGTTAGGCGAGCTCTCTGTTAGCTTAGTTTTGCAGTAGGAATCCCCCCCACCCCCCGCT
CCCGTTCCCCAGGAATCCTATACATTTTGGATGTCACAGTCATGGATGGACAGAAGTGTAAGGG
GGACCTTGGTCCAAAATTAAGTAATTGCAGTTTCATCGATTATCTGTAGCATCGAGGTCTGTTC
CTGTGTGGCTCTCTGCTTCATTCTGAGGCCAATCAGAACACCCAGATCTAAGGCTTCAGGAAGA
GTCCGGTTTCAGTCAGATGGTCTGGATCCCATATGCCTTCAGAGGGCATTAGCTTTGGAAGTTC
AGATATAGCCCTGTGTCCTTTGACCTTGTAGACATCACATTGAGCAGGCATTTTGCTGGTCTGG
GTTGATCTAGTCCTGCTGCTTGTAAATGCATGCCTGTTGTTTTACGCCTGTCTGCTTGCCTCTT
ACAAACTGAATCCTGCATTCTCCCACACTGTTTGTCTTGACAAAAGTTCCTCCTCAACACTTTC
CCTTTTGGTTTGCCACTGGCTTCAAGAGTTAGGAGGTTTGAAGCCCTGGAAATGGATGAAGGGC
CATGGCTGAGAGCTTGTGATACGCTGAGGTGACTTTCCCGCCTCACCCCTACAGAGCTGCCCTG
TGGAGCTTTGTGTAGCCCTTGGTCTACAGCCCTACAATCCCAGCAGGGAGAAAACATTATACAT
ACATATGTATACCTGATTAAGTGTCCTGTGTAGCTAGGGACTTGGAACTATCCCAGCCTGCGAT
TCCGGGGAGAATGAGCAGTGCCAGTCAGTCCAAGGGCAGGTGAGTGACTTCCTCGTAGTGCTTT
CTTTGCGGAGAGGCCCCAAAGAATGTTCTGTAAATGTCAAGAACTTGGGCTGGAAGTATTTACA
AGAAAAACTGGTGGGCTGTGTACCCAAGCGCTGGAGCGTCTTTAGAAATGGGGAAACATTTTGT
TGGTGTATGCAGAAGTTTATGTAGATATTTGGGACAGGTGTTTAAAAAAAAATTCTACCTTGCC
CCCTCCCCTTAACTCTCTGTTAGGCGTTTTATATGTGAATTAAAAAAAAAAAAAGCTTTGTTGC
TTTTGTGTTGTGTTTGGGCGAGTGTCCCGTGAGCTGCCATGTCAGCGTAGCTGAGTGGACACTA
GCTGTGTAAATAACCTCTCATGCGACATTTGTGTGGATAGCTGTGTGGCATTTCCTTCCATTAT
CAATAGGGACTCTGTGAACGCCCTTTCTCTGTAGCTACCAAAAAAAGCCCTGGCTTATGGTCCC
GTGTGACCTTGTGTCCGTAAACCCAGAATATGAGTGCCTTTAGCAAGCGTTAGCATTTCACAGA
GGGTAGAGACGACAGAATTTACTACCATTAACCACTGTTCATAAAATAGCTGGAAATAGCGGCG
GTCCGTGTGAATGCTGTTCTATGTCGTGTGTCCCCCCTGTTTCTTAGTGCAGTCTCGGTTTGCT
TTTGGGTACAGTGTGCACTCTGGACAGGAGCCTGGCTGCTGAGGCTGGCAGTGGTCACCTCGGC
GGCCATCTTCGATGCTACAGAGGACTCAGAGCTTGAGATGCTGATGCTGGAAAAACTTCCTACA
CTGACCGTGTTCCAGCTGGTTCTTCTGTAGAGTGGAGACAATTATGTATCTACAAACAGTGTAT
TGCGAGACTGTCTGGGACAGTAGCTCCAGATCACGCTGGACTTCATCTCTGCGTGGATGGAGGG
AGCTTTCCAAGCAAGATCGAGGTCTTTGGAAACGACAACTTCCTTCCTTTGACTAACTGAAAAC
GCTAAAATTCCTGAGGTCTTTATGATCTTTTGGAACATACAATTAAACCAATTTTCATGTAGAA
ATAGTAACATTTGGCTCAGAATTTTATTACGAAAGAATTTTGGGACATTTGTCAAAGTGGAAAA
CATTTGGGAGTACACTACCTAACTCTTCTATCTCCTACTATTGACATTTCCCCACTCGTGTTCC
CTTCCTATCTCCCATGAGCCAATTGCTGTGTTCTCTGTCTGCCCCTCAGGACGGATGGCTCAAT
ACATTTCAAGACAGCGTCCATACCATGGGCAGCATACACTAGGATTAATATTTAAATGTTAATG
TCTTAGGAAGACCGCATGTGTAGGTCTTAACCTAAGCCAGTAAACAGTCTCTGTTCTTTCCTGT
GGATATCAGTCTTCCTTGTCTCTGTTCTTGAGTGTGCTTAGAGTTTCCAACAAGTCTGCACCAG
GTTCCCTGGCCCACAAACCTTATGTTCCGGACAGGACTTGCTGTGAACTCCTAGGCGCTATAAC
CATTCGCCTCCTATGCCTGTACATAGCAGGATTAAACTTGGAGACAACAGTTCTGTCCACTGAG
GGGTGGGCAAGCCTTAGAGCAGTCTCCAGCTTTCCCCCAGTCATGTCAGGGAAAACTGCCGTCT
GCCTCCATCCTGTGCCCACCCTATGTGGCCAGCTCTGCAGAACTGAAGGGGTTTGCTCAGGTTG
GATGGATCGGATGGGTAGGACCAAATCACAGGCCAACCCTGAGTGCTCTTAGGTTGTAACCTTA
GGCTTCCAGTGTAACTGAACACTTCCTTTGTGCCCTTAGAAGGACTGTATTTATTTTCTACCAA
TTACAATTTTAGTTTTAGACATTTCACAGTTCTCTTCCCGTGGTCATTTGTTGTTTTGCGATGC
TCCATGTAGCTCAGGTGAGTCAATTCTACCACGCAGCCAAGGGTGACCTTGAACTCCCCCGATC
CTCCTGCCTCCACCTCCTGGTGCTGGGATTACAGGCATGTACCACCATGCCAAGCTATGAATAA
ATTGTAGTTTTAATTACGTCCAAAGCAATTGCTAAAATCTCACTGCACTGTTGAACACCGACTC
ATGCAGGGTCTGCCTGATTGTTTTTGCCTTTAAATGGCTTTTACGATCCCTCGATCAACGTAAG
TGCTCACGTGATTCCCTCACTATTGCAAATGGTGTTCCCATCACTGACTCGCCCATGCACTCTC
TACCTGATGCTTTTTTTTTGTTTAAGAAATGACTCCATATGTCAGGGAGAGCGATATTGATTGT
CTTAGGGCAAAGCCCTATTGGGAACAAACCCTCCTGGAAGTGGCTGGTCGGTCGTTGTTCTGCC
TTCTTCTGGTTATCTGATCACCCACCAAAGGTTCTGTAAGCCAGTGTGTCATTTTGTAAGTCTC
ATGTTGACTCTGTTCACCTGTCTTCCCGGCCCCACCGCCCCCTCCCCCCGCATGGGTTTTGTGT
GTTGTCTTTGAAATGCCTTATTGGGTATGCCAGGCTCTGCTGTCGAGCATCCCAGCTGTCTGCT
GAGACATACATATCCTCCCTGGGATGTGCTCTTGATCTGGAAGCAACACTGACCTAGCTTTCAG
TATCAAGGGTGCATTTTAACACAGCTATTGTCTTAAGTTAGAAATGAAGCAGGAAGCCGAGAGA
GTGTGGAACCCTTCATGTGATCAGTGTGTGACCCTGTAAAATGTGCTTTTGCTTGTTTCCACTG
GAAGGGACGCAACCTAAGAAACGCCAGTCCCAAACCCGAAAAGTGGGGCTGTGTCATATATCCA
CGCCCTCCACTTGTCACTTGGCCATTGAGAATCTGAGCAGGCCATCGGGCAGTGGGCCAGTCTC
TATGTTCTGGGGCTACAGAGCTGACTGACGTCACCGGATTCAAACCAATCAACTGTGAATTGTG
AAACTGAAGTTGTTCTTTCGGTTTTTATCTCCCTCAGCCTATTAAGTGTAGAAGTCCGAATGTC
ATTTAAGCTTAGACCACTTATGTTGGCTCATCTTGGCTGTGTACTCTCATGTATGTACTGATTT
CTGATAAAGGCTTGATGATACTGTAACGGACTTTCTGTGTTCAGTTCAATAAAACAGTTTCTGA
GTCTCGTCTCCAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063282482 ⟹ XP_063138552

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	117,034,517 - 117,066,141 (-)	NCBI

RefSeq Acc Id:

XM_063282483 ⟹ XP_063138553

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	117,034,517 - 117,066,141 (-)	NCBI

RefSeq Acc Id:

XM_063282484 ⟹ XP_063138554

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	117,034,517 - 117,063,672 (-)	NCBI

RefSeq Acc Id:

XM_063282485 ⟹ XP_063138555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	117,034,517 - 117,066,141 (-)	NCBI

RefSeq Acc Id:

XM_063282486 ⟹ XP_063138556

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	117,034,517 - 117,064,775 (-)	NCBI

RefSeq Acc Id:

XM_063282487 ⟹ XP_063138557

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	117,034,517 - 117,063,656 (-)	NCBI

RefSeq Acc Id:

XM_063282488 ⟹ XP_063138558

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	117,034,517 - 117,064,763 (-)	NCBI

RefSeq Acc Id:

XM_063282489 ⟹ XP_063138559

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	117,034,517 - 117,064,776 (-)	NCBI

RefSeq Acc Id:

XM_063282490 ⟹ XP_063138560

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	117,043,086 - 117,066,141 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_071993	(Get FASTA)	NCBI Sequence Viewer
	XP_063138552	(Get FASTA)	NCBI Sequence Viewer
	XP_063138553	(Get FASTA)	NCBI Sequence Viewer
	XP_063138554	(Get FASTA)	NCBI Sequence Viewer
	XP_063138555	(Get FASTA)	NCBI Sequence Viewer
	XP_063138556	(Get FASTA)	NCBI Sequence Viewer
	XP_063138557	(Get FASTA)	NCBI Sequence Viewer
	XP_063138558	(Get FASTA)	NCBI Sequence Viewer
	XP_063138559	(Get FASTA)	NCBI Sequence Viewer
	XP_063138560	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAA73610	(Get FASTA)	NCBI Sequence Viewer
	EDM01183	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000083964.1
	ENSRNOP00000087283
GenBank Protein	O08781	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_071993 ⟸ NM_022548

- UniProtKB:

O08781 (UniProtKB/Swiss-Prot), A6IHN5 (UniProtKB/TrEMBL), A0A8I6GFU9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MILLQQVWLPLPNRPSTSPPMSVAARSTGTLQLPPQKAFGQEASLPLAGEEDLAKRGEPDSALE
ELCKPLFCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSSVAEPVATPLVPVP
PQVGSCKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEAQSHSFSDSAEAG
QRRTRKEGSEFKMVTTRRNMYTVQSNSGPYFNARSRQRIPRDLAMCVTPSGQFYCSMCNVGAGE
EVEFRQHLESKQHKSKVSEQRYRSEMENLGYVQ

hide sequence

Ensembl Acc Id:

ENSRNOP00000013858 ⟸ ENSRNOT00000013858

Ensembl Acc Id:

ENSRNOP00000083964 ⟸ ENSRNOT00000113458

Ensembl Acc Id:

ENSRNOP00000087283 ⟸ ENSRNOT00000103680

RefSeq Acc Id:	XP_063138552 ⟸ XM_063282482
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q6J0 (UniProtKB/TrEMBL), A0A8I6GFU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138555 ⟸ XM_063282485
- Peptide Label:	isoform X2
- UniProtKB:	O08781 (UniProtKB/Swiss-Prot), A6IHN5 (UniProtKB/TrEMBL), A0A8I6GFU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138553 ⟸ XM_063282483
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q6J0 (UniProtKB/TrEMBL), A0A8I6GFU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138559 ⟸ XM_063282489
- Peptide Label:	isoform X2
- UniProtKB:	O08781 (UniProtKB/Swiss-Prot), A6IHN5 (UniProtKB/TrEMBL), A0A8I6GFU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138556 ⟸ XM_063282486
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q6J0 (UniProtKB/TrEMBL), A0A8I6GFU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138558 ⟸ XM_063282488
- Peptide Label:	isoform X2
- UniProtKB:	O08781 (UniProtKB/Swiss-Prot), A6IHN5 (UniProtKB/TrEMBL), A0A8I6GFU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138554 ⟸ XM_063282484
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q6J0 (UniProtKB/TrEMBL), A0A8I6GFU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138557 ⟸ XM_063282487
- Peptide Label:	isoform X2
- UniProtKB:	O08781 (UniProtKB/Swiss-Prot), A6IHN5 (UniProtKB/TrEMBL), A0A8I6GFU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138560 ⟸ XM_063282490
- Peptide Label:	isoform X3

Protein Domains

C2H2-type U1-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O08781-F1-model_v2	AlphaFold	O08781	1-289	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620134	AgrOrtholog
BioCyc Gene	G2FUF-53433	BioCyc
Ensembl Genes	ENSRNOG00000010119	Ensembl
	ENSRNOG00000063864	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000103680	ENTREZGENE
	ENSRNOT00000113458.1	UniProtKB/Swiss-Prot
Gene3D-CATH	Classic Zinc Finger	UniProtKB/Swiss-Prot
InterPro	Matrin/U1-like-C_Znf_C2H2	UniProtKB/Swiss-Prot
	ZMAT3	UniProtKB/Swiss-Prot
	Znf_C2H2_jaz	UniProtKB/Swiss-Prot
	Znf_C2H2_sf	UniProtKB/Swiss-Prot
	Znf_C2H2_type	UniProtKB/Swiss-Prot
KEGG Report	rno:64394	UniProtKB/Swiss-Prot
NCBI Gene	64394	ENTREZGENE
PANTHER	ZINC FINGER MATRIN-TYPE PROTEIN 3	UniProtKB/Swiss-Prot
	ZINC FINGER MATRIN-TYPE PROTEIN 3	UniProtKB/Swiss-Prot
Pfam	zf-C2H2_jaz	UniProtKB/Swiss-Prot
	zf-met	UniProtKB/Swiss-Prot
PhenoGen	Zmat3	PhenoGen
RatGTEx	ENSRNOG00000010119	RatGTEx
	ENSRNOG00000063864	RatGTEx
SMART	ZnF_C2H2	UniProtKB/Swiss-Prot
	ZnF_U1	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF57667	UniProtKB/Swiss-Prot
UniProt	A0A8I6GFU9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2Q6J0	ENTREZGENE
	A6IHN5	ENTREZGENE, UniProtKB/TrEMBL
	O08781	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-19	Zmat3	zinc finger, matrin type 3	Wig1	wild-type p53-induced gene 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Wig1	wild-type p53-induced gene 1	PAG608	p53-activated gene 608	Symbol and Name updated	1299863	APPROVED
2002-08-07	PAG608	p53-activated gene 608			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localizes preferentially to nucleoli	633665
gene_regulation	mRNA induced by p53	633665

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)