Mgat1 (alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase) - Rat Genome Database

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Gene: Mgat1 (alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase) Rattus norvegicus
Analyze
Symbol: Mgat1
Name: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
RGD ID: 620097
Description: Predicted to enable alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity and manganese ion binding activity. Predicted to be involved in protein N-linked glycosylation via asparagine. Predicted to act upstream of or within UDP-N-acetylglucosamine catabolic process and in utero embryonic development. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Orthologous to human MGAT1 (alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase); PARTICIPATES IN N-linked glycan biosynthetic pathway; INTERACTS WITH (+)-schisandrin B; 1,2,4-trimethylbenzene; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: glcNAc-T I; GNT-I; mannoside acetylglucosaminyltransferase 1; mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase; MGAT1 gene for N-acetylglucosaminyltransferase; N-acetylglucosaminyltransferase I; N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase I
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21033,563,642 - 33,582,718 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1033,561,388 - 33,591,503 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1038,250,910 - 38,268,219 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0106,789,319 - 6,806,628 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01033,244,551 - 33,261,860 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01034,518,392 - 34,537,214 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1034,519,790 - 34,537,210 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01034,294,712 - 34,313,531 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41034,706,908 - 34,724,328 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11034,707,956 - 34,725,377 (+)NCBI
Celera1032,944,950 - 32,962,376 (+)NCBICelera
Cytogenetic Map10q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Cloning of a cDNA encoding N-acetylglucosaminyltransferase I from rat liver and analysis of its expression in rat tissues. Fukada T, etal., Biosci Biotechnol Biochem 1994 Jan;58(1):200-1.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:1421759   PMID:1702225   PMID:8290590   PMID:9781684   PMID:12878032   PMID:12913295   PMID:15489334   PMID:19199708   PMID:19946888   PMID:20378551   PMID:23376485   PMID:23533145  
PMID:24769233  


Genomics

Comparative Map Data
Mgat1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21033,563,642 - 33,582,718 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1033,561,388 - 33,591,503 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1038,250,910 - 38,268,219 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0106,789,319 - 6,806,628 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01033,244,551 - 33,261,860 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01034,518,392 - 34,537,214 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1034,519,790 - 34,537,210 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01034,294,712 - 34,313,531 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41034,706,908 - 34,724,328 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11034,707,956 - 34,725,377 (+)NCBI
Celera1032,944,950 - 32,962,376 (+)NCBICelera
Cytogenetic Map10q21NCBI
MGAT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385180,784,780 - 180,815,616 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5180,784,780 - 180,815,652 (-)EnsemblGRCh38hg38GRCh38
GRCh375180,211,780 - 180,242,616 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365180,150,149 - 180,162,654 (-)NCBINCBI36Build 36hg18NCBI36
Build 345180,150,153 - 180,162,654NCBI
Celera5175,841,463 - 175,861,059 (-)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5174,942,953 - 174,962,572 (-)NCBIHuRef
CHM1_15179,649,941 - 179,669,538 (-)NCBICHM1_1
T2T-CHM13v2.05181,341,132 - 181,371,969 (-)NCBIT2T-CHM13v2.0
Mgat1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391149,135,018 - 49,153,854 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1149,135,018 - 49,153,857 (+)EnsemblGRCm39 Ensembl
GRCm381149,244,191 - 49,263,027 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1149,244,191 - 49,263,030 (+)EnsemblGRCm38mm10GRCm38
MGSCv371149,057,693 - 49,076,529 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361149,087,669 - 49,106,450 (+)NCBIMGSCv36mm8
Celera1153,806,759 - 53,825,547 (+)NCBICelera
Cytogenetic Map11B1.2NCBI
cM Map1129.27NCBI
Mgat1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955530437,008 - 452,289 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955530436,518 - 452,296 (+)NCBIChiLan1.0ChiLan1.0
MGAT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan15173,963,080 - 173,988,256 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05175,978,425 - 176,003,620 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15183,292,153 - 183,317,334 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5183,293,237 - 183,294,574 (-)Ensemblpanpan1.1panPan2
MGAT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.111114,587 - 129,014 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl11115,631 - 129,091 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha11172,388 - 187,101 (-)NCBIDog10K_Boxer_Tasha
Mgat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213118,240,717 - 118,260,848 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936826344,456 - 364,418 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936826344,452 - 364,929 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MGAT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl257,900,216 - 57,920,954 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1257,849,185 - 57,920,410 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22159,732,009 - 159,753,282 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MGAT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12382,525,527 - 82,527,753 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2382,507,525 - 82,508,862 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 Ensembl2382,507,525 - 82,508,862 (-)NCBIChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607513,929,392 - 13,950,488 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mgat1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462481111,050,385 - 11,069,431 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462481111,050,378 - 11,069,734 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mgat1
51 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:267
Count of miRNA genes:179
Interacting mature miRNAs:211
Transcripts:ENSRNOT00000052360
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
631531Iresp2Immunoglobin response QTL26.3blood immunoglobulin E amount (VT:0002492)serum total immunoglobulin E level (CMO:0001542)102291826836400810Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2298480Eau7Experimental allergic uveoretinitis QTL 70.0049uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)102795762634490668Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102887565052200160Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat

Markers in Region
BF392858  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21033,568,978 - 33,569,215 (+)MAPPERmRatBN7.2
Rnor_6.01034,523,476 - 34,523,712NCBIRnor6.0
Rnor_5.01034,299,793 - 34,300,029UniSTSRnor5.0
RGSC_v3.41034,710,594 - 34,710,830UniSTSRGSC3.4
Celera1032,948,636 - 32,948,872UniSTS
RH 3.4 Map10367.9UniSTS
Cytogenetic Map10q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_030861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006246182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006246183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006246184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006246185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB012874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB012875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB012876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB012877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB012878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB100423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB100424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB100425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC133273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC074010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D16302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000052360   ⟹   ENSRNOP00000044560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1033,564,052 - 33,582,785 (+)Ensembl
Rnor_6.0 Ensembl1034,519,790 - 34,537,210 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000085832   ⟹   ENSRNOP00000068827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1033,570,324 - 33,582,718 (+)Ensembl
Rnor_6.0 Ensembl1034,524,845 - 34,537,208 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093956   ⟹   ENSRNOP00000081587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1033,569,718 - 33,591,503 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100116   ⟹   ENSRNOP00000083147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1033,566,948 - 33,591,503 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101283   ⟹   ENSRNOP00000081858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1033,563,912 - 33,591,503 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106126   ⟹   ENSRNOP00000090215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1033,561,388 - 33,591,503 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113892   ⟹   ENSRNOP00000079270
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1033,569,739 - 33,591,503 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116725   ⟹   ENSRNOP00000082878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1033,574,796 - 33,591,503 (+)Ensembl
RefSeq Acc Id: NM_030861   ⟹   NP_110488
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21033,565,293 - 33,582,714 (+)NCBI
Rnor_6.01034,519,790 - 34,537,210 (+)NCBI
Rnor_5.01034,294,712 - 34,313,531 (+)NCBI
RGSC_v3.41034,706,908 - 34,724,328 (+)RGD
Celera1032,944,950 - 32,962,376 (+)RGD
Sequence:
RefSeq Acc Id: XM_006246182   ⟹   XP_006246244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21033,563,867 - 33,582,718 (+)NCBI
Rnor_6.01034,518,392 - 34,537,214 (+)NCBI
Rnor_5.01034,294,712 - 34,313,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006246183   ⟹   XP_006246245
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21033,569,786 - 33,582,718 (+)NCBI
Rnor_6.01034,524,220 - 34,537,214 (+)NCBI
Rnor_5.01034,294,712 - 34,313,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006246184   ⟹   XP_006246246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21033,569,785 - 33,582,718 (+)NCBI
Rnor_6.01034,524,220 - 34,537,214 (+)NCBI
Rnor_5.01034,294,712 - 34,313,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006246185   ⟹   XP_006246247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21033,563,867 - 33,582,718 (+)NCBI
Rnor_6.01034,518,392 - 34,537,214 (+)NCBI
Rnor_5.01034,294,712 - 34,313,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039086928   ⟹   XP_038942856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21033,563,642 - 33,582,718 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_110488   ⟸   NM_030861
- UniProtKB: Q09325 (UniProtKB/Swiss-Prot),   A6HDW1 (UniProtKB/TrEMBL),   A0A8L2R007 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006246247   ⟸   XM_006246185
- Peptide Label: isoform X1
- UniProtKB: Q09325 (UniProtKB/Swiss-Prot),   A6HDW1 (UniProtKB/TrEMBL),   A0A8L2R007 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006246244   ⟸   XM_006246182
- Peptide Label: isoform X1
- UniProtKB: Q09325 (UniProtKB/Swiss-Prot),   A6HDW1 (UniProtKB/TrEMBL),   A0A8L2R007 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006246246   ⟸   XM_006246184
- Peptide Label: isoform X1
- UniProtKB: Q09325 (UniProtKB/Swiss-Prot),   A6HDW1 (UniProtKB/TrEMBL),   A0A8L2R007 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006246245   ⟸   XM_006246183
- Peptide Label: isoform X1
- UniProtKB: Q09325 (UniProtKB/Swiss-Prot),   A6HDW1 (UniProtKB/TrEMBL),   A0A8L2R007 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000068827   ⟸   ENSRNOT00000085832
RefSeq Acc Id: ENSRNOP00000044560   ⟸   ENSRNOT00000052360
RefSeq Acc Id: XP_038942856   ⟸   XM_039086928
- Peptide Label: isoform X1
- UniProtKB: Q09325 (UniProtKB/Swiss-Prot),   A6HDW1 (UniProtKB/TrEMBL),   A0A8L2R007 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000090215   ⟸   ENSRNOT00000106126
RefSeq Acc Id: ENSRNOP00000083147   ⟸   ENSRNOT00000100116
RefSeq Acc Id: ENSRNOP00000082878   ⟸   ENSRNOT00000116725
RefSeq Acc Id: ENSRNOP00000079270   ⟸   ENSRNOT00000113892
RefSeq Acc Id: ENSRNOP00000081858   ⟸   ENSRNOT00000101283
RefSeq Acc Id: ENSRNOP00000081587   ⟸   ENSRNOT00000093956

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q09325-F1-model_v2 AlphaFold Q09325 1-447 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620097 AgrOrtholog
BioCyc Gene G2FUF-25299 BioCyc
BioCyc Pathway PWY-7426 [complex N-linked glycan biosynthesis (vertebrates)] BioCyc
Ensembl Genes ENSRNOG00000031208 Ensembl
  ENSRNOG00000068826 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000044560 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000068827.2 UniProtKB/TrEMBL
  ENSRNOP00000079270 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000081587 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000081858 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000082878 UniProtKB/Swiss-Prot
  ENSRNOP00000083147 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000090215 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000052360 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000085832.2 UniProtKB/TrEMBL
  ENSRNOT00000093956 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000100116 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000101283 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000106126 UniProtKB/Swiss-Prot
  ENSRNOT00000113892 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000116725 UniProtKB/Swiss-Prot
Gene3D-CATH N-Acetylglucosaminyltransferase I, Domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7100030 IMAGE-MGC_LOAD
InterPro Glyco_trans_13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:81519 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91661 IMAGE-MGC_LOAD
NCBI Gene 81519 ENTREZGENE
PANTHER ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1/ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GNT-I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mgat1 PhenoGen
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8L2R007 ENTREZGENE, UniProtKB/TrEMBL
  A6HDW1 ENTREZGENE, UniProtKB/TrEMBL
  MGAT1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-13 Mgat1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase  Mgat1  mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-08-29 Mgat1  mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase  Mgat1  mannoside acetylglucosaminyltransferase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Mgat1  mannoside acetylglucosaminyltransferase 1    Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase  Name updated 1299863 APPROVED
2005-01-20 Mgat1  Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase    N-acetylglucosaminyltransferase I  Name updated 1299863 APPROVED
2002-08-07 Mgat1  N-acetylglucosaminyltransferase I      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in liver 729009