Atp5mc3 (ATP synthase membrane subunit c locus 3) - Rat Genome Database

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Gene: Atp5mc3 (ATP synthase membrane subunit c locus 3) Rattus norvegicus
Analyze
Symbol: Atp5mc3
Name: ATP synthase membrane subunit c locus 3
RGD ID: 620052
Description: Enables ligand-gated channel activity. Involved in several processes, including pore complex assembly; response to (R)-carnitine; and response to muscle stretch. Part of cation channel complex. Human ortholog(s) of this gene implicated in early-onset dystonia and/or spastic paraplegia. Orthologous to human ATP5MC3 (ATP synthase membrane subunit c locus 3); PARTICIPATES IN Alzheimer's disease pathway; Huntington's disease pathway; oxidative phosphorylation pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ATP synthase F(0) complex subunit C3, mitochondrial; ATP synthase lipid-binding protein; ATP synthase lipid-binding protein, mitochondrial; ATP synthase proteolipid P3; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9); ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c, isoform 3; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9); ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9); Atp5g3; ATPase protein 9; ATPase subunit c
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8379,218,014 - 79,220,664 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl379,218,014 - 79,220,664 (-)EnsemblGRCr8
mRatBN7.2358,810,535 - 58,813,185 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl358,810,535 - 58,814,279 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx362,204,937 - 62,207,586 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0370,788,598 - 70,791,247 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0368,553,654 - 68,556,303 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0360,811,218 - 60,813,903 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl360,811,210 - 60,813,869 (-)Ensemblrn6Rnor6.0
Rnor_5.0367,289,961 - 67,292,646 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4356,511,747 - 56,514,204 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera358,337,134 - 58,339,819 (-)NCBICelera
RGSC_v3.1879,924,847 - 79,924,970 (+)NCBI
Cytogenetic Map3q23NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Investigation of differentially expressed genes in the ventricular myocardium of senescent rats. Ishihata A and Katano Y, Ann N Y Acad Sci. 2006 May;1067:142-51.
4. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
5. Differentially expressed genes and morphological changes during lengthened immobilization in rat soleus muscle. Kim JW, etal., Differentiation. 2007 Feb;75(2):147-57.
6. Rat mitochondrial ATP synthase ATP5G3: cloning and upregulation in pancreas after chronic ethanol feeding. Li HS, etal., Physiol Genomics 2001 Jul 17;6(2):91-8.
7. Batten disease and the control of the Fo subunit c pore by cGMP and calcium. McGeoch JE and Guidotti G, Eur J Paediatr Neurol. 2001;5 Suppl A:147-50.
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
10. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
11. GOA pipeline RGD automated data pipeline
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Comprehensive gene review and curation RGD comprehensive gene curation
14. Identification of differentially expressed genes induced in the rat brain by acetyl-L-carnitine as evidenced by suppression subtractive hybridisation. Traina G, etal., Brain Res Mol Brain Res. 2004 Dec 6;132(1):57-63. doi: 10.1016/j.molbrainres.2004.09.006.
Additional References at PubMed
PMID:12477932   PMID:18614015   PMID:34800366  


Genomics

Comparative Map Data
Atp5mc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8379,218,014 - 79,220,664 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl379,218,014 - 79,220,664 (-)EnsemblGRCr8
mRatBN7.2358,810,535 - 58,813,185 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl358,810,535 - 58,814,279 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx362,204,937 - 62,207,586 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0370,788,598 - 70,791,247 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0368,553,654 - 68,556,303 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0360,811,218 - 60,813,903 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl360,811,210 - 60,813,869 (-)Ensemblrn6Rnor6.0
Rnor_5.0367,289,961 - 67,292,646 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4356,511,747 - 56,514,204 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera358,337,134 - 58,339,819 (-)NCBICelera
RGSC_v3.1879,924,847 - 79,924,970 (+)NCBI
Cytogenetic Map3q23NCBI
ATP5MC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382175,176,258 - 175,181,710 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2175,176,258 - 175,181,710 (-)Ensemblhg38GRCh38
GRCh372176,040,986 - 176,046,438 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362175,749,232 - 175,754,736 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342175,868,115 - 175,871,960NCBI
Celera2169,654,533 - 169,660,034 (-)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2167,922,040 - 167,927,549 (-)NCBIHuRef
CHM1_12176,046,942 - 176,052,451 (-)NCBICHM1_1
T2T-CHM13v2.02175,665,044 - 175,670,493 (-)NCBIT2T-CHM13v2.0
Atp5mc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39273,738,791 - 73,742,793 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl273,738,791 - 73,741,670 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38273,908,447 - 73,912,464 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl273,908,447 - 73,911,326 (-)Ensemblmm10GRCm38
MGSCv37273,746,507 - 73,749,351 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36273,709,289 - 73,712,133 (-)NCBIMGSCv36mm8
Celera275,595,344 - 75,598,188 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map243.9NCBI
Atp5mc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955449310,839 - 314,086 (+)Ensembl
ChiLan1.0NW_004955449310,839 - 314,086 (+)NCBIChiLan1.0ChiLan1.0
ATP5MC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21377,841,920 - 77,848,435 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B77,856,895 - 77,862,384 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B62,454,409 - 62,458,067 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B179,904,726 - 179,909,159 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B179,904,984 - 179,909,159 (-)EnsemblpanPan2panpan1.1
ATP5MC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13619,131,184 - 19,134,350 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3619,139,914 - 19,143,018 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03619,269,061 - 19,272,169 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3619,268,875 - 19,272,451 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13619,344,640 - 19,347,742 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03619,342,834 - 19,345,940 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03619,453,941 - 19,457,046 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Atp5mc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303136,282,245 - 136,285,493 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365094,836,148 - 4,839,330 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5MC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1581,083,960 - 81,094,289 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11581,091,037 - 81,094,297 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21590,317,917 - 90,321,177 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5MC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11060,742,581 - 60,746,302 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040138,867,190 - 138,870,677 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp5mc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478712,343,789 - 12,350,329 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462478712,347,233 - 12,350,329 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp5mc3
43 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:29
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000058234
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)35986366387321459Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)34887661993876619Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)34887661993876619Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)34790417292904172Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)35986366387321459Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35109256196092561Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)34865774493657744Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)35986366383358329Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)34865774493657744Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)35076614595766145Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)35109256196092561Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)35076614595766145Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)34865774493657744Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1582249Bw77Body weight QTL 773.20.0025epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)37359251285062403Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)34865774493657744Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)34865774493657744Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001361400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF315374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM058126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FN800719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000058234   ⟹   ENSRNOP00000055032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl379,218,014 - 79,220,664 (-)Ensembl
mRatBN7.2 Ensembl358,810,535 - 58,812,529 (-)Ensembl
Rnor_6.0 Ensembl360,811,210 - 60,813,869 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117216   ⟹   ENSRNOP00000088934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl358,810,544 - 58,814,279 (-)Ensembl
RefSeq Acc Id: NM_001361400   ⟹   NP_001348329
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8379,218,014 - 79,220,664 (-)NCBI
mRatBN7.2358,810,535 - 58,813,185 (-)NCBI
RefSeq Acc Id: NM_001361401   ⟹   NP_001348330
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8379,218,014 - 79,220,664 (-)NCBI
mRatBN7.2358,810,535 - 58,813,185 (-)NCBI
Ensembl Acc Id: ENSRNOP00000055032   ⟸   ENSRNOT00000058234
RefSeq Acc Id: NP_001348330   ⟸   NM_001361401
- Peptide Label: precursor
- UniProtKB: Q499S2 (UniProtKB/TrEMBL),   A0A8I6AAH2 (UniProtKB/TrEMBL),   F7EW45 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001348329   ⟸   NM_001361400
- Peptide Label: precursor
- UniProtKB: Q499S2 (UniProtKB/TrEMBL),   A0A8I6AAH2 (UniProtKB/TrEMBL),   F7EW45 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000088934   ⟸   ENSRNOT00000117216
Protein Domains
V-ATPase proteolipid subunit C-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q71S46-F1-model_v2 AlphaFold Q71S46 1-142 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692162
Promoter ID:EPDNEW_R2672
Type:multiple initiation site
Name:Atp5mc3_1
Description:ATP synthase membrane subunit c locus 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0360,813,847 - 60,813,907EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620052 AgrOrtholog
BioCyc Gene G2FUF-49353 BioCyc
BioCyc Pathway PWY-7980 [ATP biosynthesis] BioCyc
BioCyc Pathway Image PWY-7980 BioCyc
Ensembl Genes ENSRNOG00000001596 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000058234 ENTREZGENE
Gene3D-CATH 1.20.20.10 UniProtKB/Swiss-Prot
InterPro ATP_synth_F0_csu UniProtKB/Swiss-Prot
  ATP_synth_F0_csu_DDCD_BS UniProtKB/Swiss-Prot
  ATP_synth_F0_csu_sf UniProtKB/Swiss-Prot
  ATPase_proteolipid_c-like_dom UniProtKB/Swiss-Prot
  F/V-ATP_Csub_sf UniProtKB/Swiss-Prot
NCBI Gene 114630 ENTREZGENE
PANTHER ATPASE PROTEIN 9 UniProtKB/Swiss-Prot
  PTHR10031 UniProtKB/Swiss-Prot
Pfam ATP-synt_C UniProtKB/Swiss-Prot
PhenoGen Atp5mc3 PhenoGen
PRINTS ATPASEC UniProtKB/Swiss-Prot
PROSITE ATPASE_C UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001596 RatGTEx
Superfamily-SCOP SSF81333 UniProtKB/Swiss-Prot
UniProt A0A8I6AAH2 ENTREZGENE, UniProtKB/TrEMBL
  AT5G3_RAT UniProtKB/Swiss-Prot
  F7EW45 ENTREZGENE, UniProtKB/TrEMBL
  Q499S2 ENTREZGENE, UniProtKB/TrEMBL
  Q71S46 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-30 Atp5mc3  ATP synthase membrane subunit c locus 3  Atp5g3  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-12-01 Atp5g3  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)  Atp5g3  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-06-27 Atp5g3  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)  Atp5g3  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Atp5g3  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Atp5g3  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_product belongs to a subfamily of P-type ATPases 631958