Nde1 (nudE neurodevelopment protein 1) - Rat Genome Database

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Gene: Nde1 (nudE neurodevelopment protein 1) Rattus norvegicus
Analyze
Symbol: Nde1
Name: nudE neurodevelopment protein 1
RGD ID: 620038
Description: Enables protein domain specific binding activity. Predicted to be involved in several processes, including microtubule cytoskeleton organization; nervous system development; and vesicle transport along microtubule. Predicted to act upstream of or within forebrain development and neuroblast proliferation. Predicted to be located in spindle pole centrosome and synapse. Predicted to be part of kinesin complex. Predicted to be active in centrosome and kinetochore. Human ortholog(s) of this gene implicated in lissencephaly 4. Orthologous to human NDE1 (nudE neurodevelopment protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LIS1-interacting protein NUDE1; LOC103690118; nuclear distribution gene E homolog (Aspergillus); nuclear distribution gene E homolog 1; nuclear distribution gene E homolog 1 (A nidulans); nuclear distribution protein nudE homolog 1; nuclear distribution protein nudE homolog 1-like; Nude; nudE nuclear distribution E homolog 1; nudE nuclear distribution E homolog 1 (A. nidulans); nudE nuclear distribution gene E homolog 1; nudE nuclear distribution gene E homolog 1 (A. nidulans); rNudE
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8101,347,010 - 1,391,167 (-)NCBIGRCr8
mRatBN7.210839,788 - 883,946 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10839,788 - 883,869 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx105,536,557 - 5,572,975 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01034,992,867 - 35,029,285 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010852,733 - 889,160 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010860,513 - 904,624 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10860,521 - 896,938 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01011,539,735 - 11,584,847 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01013,001 - 24,016 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410777,877 - 814,260 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110777,876 - 814,260 (-)NCBI
Celera1011,429,415 - 11,465,811 (-)NCBICelera
Cytogenetic Map10q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
4-phenylbutyric acid  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDT  (EXP)
decabromodiphenyl ether  (EXP)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenthion  (ISO)
fluoranthene  (ISO)
FR900359  (ISO)
glyphosate  (ISO)
menadione  (ISO)
N-methylformamide  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
phenylmercury acetate  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
tributylstannane  (EXP)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (IBA,IEA,ISO,ISS)
cleavage furrow  (IEA)
cytoplasm  (IEA)
kinesin complex  (IBA)
kinetochore  (IBA,IEA,ISO)
microtubule  (IEA)
microtubule organizing center  (ISO)
spindle  (IEA,ISO)
spindle pole centrosome  (IEA,ISO,ISS)
synapse  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Direct association of LIS1, the lissencephaly gene product, with a mammalian homologue of a fungal nuclear distribution protein, rNUDE. Kitagawa M, etal., FEBS Lett 2000 Aug 11;479(1-2):57-62.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11163258   PMID:12477932   PMID:15473967   PMID:15489334   PMID:15571978   PMID:16107726   PMID:17202468   PMID:17600710   PMID:18469343   PMID:18983980   PMID:19468067   PMID:19946888  
PMID:21399614   PMID:21529752   PMID:21911489   PMID:22843697   PMID:27553190  


Genomics

Comparative Map Data
Nde1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8101,347,010 - 1,391,167 (-)NCBIGRCr8
mRatBN7.210839,788 - 883,946 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10839,788 - 883,869 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx105,536,557 - 5,572,975 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01034,992,867 - 35,029,285 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010852,733 - 889,160 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010860,513 - 904,624 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10860,521 - 896,938 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01011,539,735 - 11,584,847 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01013,001 - 24,016 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410777,877 - 814,260 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110777,876 - 814,260 (-)NCBI
Celera1011,429,415 - 11,465,811 (-)NCBICelera
Cytogenetic Map10q11NCBI
NDE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381615,643,382 - 15,726,353 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1615,643,267 - 15,734,691 (+)EnsemblGRCh38hg38GRCh38
GRCh371615,737,239 - 15,820,210 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361615,651,605 - 15,726,491 (+)NCBINCBI36Build 36hg18NCBI36
Build 341615,651,604 - 15,726,490NCBI
Celera1615,417,601 - 15,500,696 (+)NCBICelera
Cytogenetic Map16p13.11NCBI
HuRef1615,130,950 - 15,213,642 (+)NCBIHuRef
CHM1_11615,821,504 - 15,904,590 (+)NCBICHM1_1
T2T-CHM13v2.01615,648,287 - 15,731,290 (+)NCBIT2T-CHM13v2.0
Nde1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391613,981,139 - 14,010,792 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1613,981,139 - 14,010,792 (+)EnsemblGRCm39 Ensembl
GRCm381614,163,275 - 14,192,928 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1614,163,275 - 14,192,928 (+)EnsemblGRCm38mm10GRCm38
MGSCv371614,163,368 - 14,193,021 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361614,083,053 - 14,106,144 (+)NCBIMGSCv36mm8
Celera1614,769,808 - 14,799,423 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map169.7NCBI
Nde1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955442495,704 - 542,976 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955442495,704 - 530,296 (+)NCBIChiLan1.0ChiLan1.0
NDE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21815,700,179 - 15,781,380 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11619,483,154 - 19,564,415 (+)NCBINHGRI_mPanPan1
PanPan1.11615,948,881 - 16,004,208 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1615,948,881 - 16,027,986 (+)Ensemblpanpan1.1panPan2
NDE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1628,143,244 - 28,186,069 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl628,143,244 - 28,186,051 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha629,506,656 - 29,549,398 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0628,306,487 - 28,349,314 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl628,304,024 - 28,349,323 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1628,109,441 - 28,152,348 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0627,999,465 - 28,042,161 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0628,404,915 - 28,447,832 (-)NCBIUU_Cfam_GSD_1.0
Nde1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344115,096,073 - 115,138,607 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365013,193,916 - 3,221,700 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365013,193,962 - 3,234,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl37,125,936 - 7,180,623 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.137,145,094 - 7,174,691 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NDE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1514,670,559 - 14,720,025 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl514,684,215 - 14,722,192 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606815,318,463 - 15,370,071 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nde1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624782236,735 - 268,516 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624782236,715 - 284,200 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nde1
137 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:32
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000000029
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat

Markers in Region
RH131713  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210840,016 - 840,223 (+)MAPPERmRatBN7.2
Rnor_6.010860,742 - 860,948NCBIRnor6.0
Rnor_5.01011,539,964 - 11,540,170UniSTSRnor5.0
RGSC_v3.410778,098 - 778,304UniSTSRGSC3.4
Celera1011,429,636 - 11,429,842UniSTS
Cytogenetic Map10q11UniSTS
AU049328  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210876,517 - 876,816 (+)MAPPERmRatBN7.2
Rnor_6.010897,243 - 897,541NCBIRnor6.0
Rnor_6.01016,551 - 16,849NCBIRnor6.0
Rnor_5.01011,576,564 - 11,576,862UniSTSRnor5.0
Rnor_5.01016,551 - 16,849UniSTSRnor5.0
RGSC_v3.410814,565 - 814,863UniSTSRGSC3.4
Celera1011,466,116 - 11,466,414UniSTS
Cytogenetic Map10q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000081159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1012,180 - 24,144 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085269
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1016,265 - 23,699 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086392   ⟹   ENSRNOP00000073786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10839,788 - 883,869 (-)Ensembl
Rnor_6.0 Ensembl10860,521 - 896,938 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1012,840 - 24,144 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117824   ⟹   ENSRNOP00000089660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10839,791 - 883,824 (-)Ensembl
RefSeq Acc Id: NM_053347   ⟹   NP_445799
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8101,347,018 - 1,383,435 (-)NCBI
mRatBN7.210839,796 - 876,213 (-)NCBI
Rnor_6.010860,521 - 896,938 (-)NCBI
Rnor_5.01011,539,735 - 11,584,847 (-)NCBI
RGSC_v3.410777,877 - 814,260 (-)RGD
Celera1011,429,415 - 11,465,811 (-)RGD
Sequence:
RefSeq Acc Id: XM_006245849   ⟹   XP_006245911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8101,347,010 - 1,391,167 (-)NCBI
mRatBN7.210842,215 - 883,946 (-)NCBI
Rnor_6.010860,513 - 904,624 (-)NCBI
Rnor_5.01011,539,735 - 11,584,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245850   ⟹   XP_006245912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8101,347,010 - 1,391,096 (-)NCBI
mRatBN7.210842,215 - 883,896 (-)NCBI
Rnor_6.010860,513 - 904,617 (-)NCBI
Rnor_5.01011,539,735 - 11,584,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245851   ⟹   XP_006245913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8101,347,010 - 1,391,167 (-)NCBI
mRatBN7.210839,788 - 883,946 (-)NCBI
Rnor_6.010860,513 - 904,624 (-)NCBI
Rnor_5.01011,539,735 - 11,584,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063269977   ⟹   XP_063126047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8101,347,010 - 1,391,167 (-)NCBI
RefSeq Acc Id: XM_063269978   ⟹   XP_063126048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8101,347,010 - 1,391,085 (-)NCBI
RefSeq Acc Id: XR_005489955
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8101,349,688 - 1,391,167 (-)NCBI
mRatBN7.210842,456 - 883,946 (-)NCBI
RefSeq Acc Id: NP_445799   ⟸   NM_053347
- UniProtKB: Q642F3 (UniProtKB/Swiss-Prot),   Q9ES39 (UniProtKB/Swiss-Prot),   A6KU37 (UniProtKB/TrEMBL),   A0A8I6AC74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245913   ⟸   XM_006245851
- Peptide Label: isoform X2
- UniProtKB: Q642F3 (UniProtKB/Swiss-Prot),   Q9ES39 (UniProtKB/Swiss-Prot),   A6KU37 (UniProtKB/TrEMBL),   A0A8I6AC74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245911   ⟸   XM_006245849
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AC74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245912   ⟸   XM_006245850
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AC74 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073786   ⟸   ENSRNOT00000086392
Ensembl Acc Id: ENSRNOP00000089660   ⟸   ENSRNOT00000117824
RefSeq Acc Id: XP_063126047   ⟸   XM_063269977
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AC74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126048   ⟸   XM_063269978
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AC74 (UniProtKB/TrEMBL)
Protein Domains
NUDE

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9ES39-F1-model_v2 AlphaFold Q9ES39 1-344 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620038 AgrOrtholog
BioCyc Gene G2FUF-26257 BioCyc
Ensembl Genes ENSRNOG00000057054 Ensembl
  ENSRNOG00000058007 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00055005251 UniProtKB/Swiss-Prot
  ENSRNOG00060012569 UniProtKB/Swiss-Prot
  ENSRNOG00065002655 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000086392.2 UniProtKB/TrEMBL
  ENSRNOT00000117824.1 UniProtKB/TrEMBL
  ENSRNOT00055008415 UniProtKB/Swiss-Prot
  ENSRNOT00060021308 UniProtKB/Swiss-Prot
  ENSRNOT00065003566 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.250.1080 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7190483 IMAGE-MGC_LOAD
InterPro NUDE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUDE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:83836 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:93309 IMAGE-MGC_LOAD
NCBI Gene 83836 ENTREZGENE
PANTHER NUCLEAR DISTRIBUTION PROTEIN NUDE HOMOLOG 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10921 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam NUDE_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nde1 PhenoGen
RatGTEx ENSRNOG00000057054 RatGTEx
  ENSRNOG00000058007 RatGTEx
  ENSRNOG00055005251 RatGTEx
  ENSRNOG00060012569 RatGTEx
  ENSRNOG00065002655 RatGTEx
UniProt A0A8I6AC74 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2R800_RAT UniProtKB/TrEMBL
  A6KU37 ENTREZGENE, UniProtKB/TrEMBL
  A6KU38_RAT UniProtKB/TrEMBL
  NDE1_RAT UniProtKB/Swiss-Prot
  Q642F3 ENTREZGENE
  Q9ES39 ENTREZGENE
UniProt Secondary Q642F3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Nde1  nudE neurodevelopment protein 1  LOC103690118  nuclear distribution protein nudE homolog 1-like  Data merged from RGD:9398378 737654 PROVISIONAL
2014-08-25 LOC103690118  nuclear distribution protein nudE homolog 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-08-14 Nde1  nudE neurodevelopment protein 1  Nde1  nudE nuclear distribution E homolog 1 (A. nidulans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-09 Nde1  nudE nuclear distribution E homolog 1 (A. nidulans)  Nde1  nudE nuclear distribution gene E homolog 1 (A. nidulans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Nde1  nudE nuclear distribution gene E homolog 1 (A. nidulans)  Nde1  nuclear distribution gene E homolog 1 (A nidulans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Nde1  nuclear distribution gene E homolog 1 (A nidulans)  Nude  nuclear distribution gene E homolog (Aspergillus)  Symbol and Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_homology homologous to fungal nud gene product, NUDE, and Xenopus mitotic phosphoprotein 43 633389