Hivep2 (HIVEP zinc finger 2) - Rat Genome Database

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Pathways
Gene: Hivep2 (HIVEP zinc finger 2) Rattus norvegicus
Analyze
Symbol: Hivep2
Name: HIVEP zinc finger 2
RGD ID: 61988
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 43. Orthologous to human HIVEP2 (HIVEP zinc finger 2); INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: angiotensinogen gene-inducible enhancer-binding protein 1; c-myc intron binding protein 1; DNA-binding protein AGIE-BP1; human immunodeficiency virus type 1 enhancer-binding protein 2; human immunodeficiency virus type I enhancer binding protein 2; human immunodeficiency virus type I enhancer-binding protein 2; human immunodeficiency virus type I enhancer-binding protein 2 homolog; MIBP-1; MIBP1; myc intron-binding protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8110,176,880 - 10,376,089 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl110,179,402 - 10,376,089 (+)EnsemblGRCr8
mRatBN7.218,358,205 - 8,555,993 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl18,359,289 - 8,555,993 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx18,074,215 - 8,272,890 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0114,073,360 - 14,272,030 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.018,341,455 - 8,537,959 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.018,129,354 - 8,333,890 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl18,310,577 - 8,333,885 (+)Ensemblrn6Rnor6.0
Rnor_5.019,755,847 - 9,953,696 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.418,783,016 - 9,032,351 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera16,844,547 - 7,040,486 (+)NCBICelera
RGSC_v3.118,783,015 - 9,032,351 (+)NCBI
Cytogenetic Map1p13NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-butoxyethanol  (ISO)
3',5'-cyclic AMP  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxynon-2-enal  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP)
bisphenol AF  (EXP)
bisphenol F  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dichloromethane  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
ethylbenzene  (ISO)
flavonoids  (EXP)
fluoranthene  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (EXP)
graphite  (EXP)
GSK-J4  (ISO)
inulin  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
maneb  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
N-methyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (EXP)
nickel dichloride  (ISO)
niclosamide  (ISO)
o-xylene  (ISO)
okadaic acid  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
quercetin  (ISO)
quinolin-8-ol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sotorasib  (ISO)
testosterone enanthate  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
toluene  (ISO)
trametinib  (ISO)
trichloroethene  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Genome-wide interaction study reveals age-dependent determinants of responsiveness to inhaled corticosteroids in individuals with asthma. Dahlin A, etal., PLoS One. 2020 Mar 2;15(3):e0229241. doi: 10.1371/journal.pone.0229241. eCollection 2020.
2. Activation of somatostatin receptor II expression by transcription factors MIBP1 and SEF-2 in the murine brain. Dörflinger U, etal., Mol Cell Biol. 1999 May;19(5):3736-47.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Cloning and characterization of a c-myc intron binding protein (MIBP1). Makino R, etal., Nucleic Acids Res 1994 Dec 25;22(25):5679-85.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Angiotensinogen gene-inducible enhancer-binding protein 1, a member of a new family of large nuclear proteins that recognize nuclear factor kappa B-binding sites through a zinc finger motif. Ron D, etal., Mol Cell Biol 1991 May;11(5):2887-95.
12. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Genomics

Comparative Map Data
Hivep2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8110,176,880 - 10,376,089 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl110,179,402 - 10,376,089 (+)EnsemblGRCr8
mRatBN7.218,358,205 - 8,555,993 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl18,359,289 - 8,555,993 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx18,074,215 - 8,272,890 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0114,073,360 - 14,272,030 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.018,341,455 - 8,537,959 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.018,129,354 - 8,333,890 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl18,310,577 - 8,333,885 (+)Ensemblrn6Rnor6.0
Rnor_5.019,755,847 - 9,953,696 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.418,783,016 - 9,032,351 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera16,844,547 - 7,040,486 (+)NCBICelera
RGSC_v3.118,783,015 - 9,032,351 (+)NCBI
Cytogenetic Map1p13NCBI
HIVEP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386142,751,469 - 142,945,733 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6142,751,467 - 142,956,698 (-)Ensemblhg38GRCh38
GRCh376143,072,606 - 143,266,313 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366143,114,297 - 143,308,031 (-)NCBIBuild 36Build 36hg18NCBI36
Build 346143,114,298 - 143,137,675NCBI
Celera6143,813,124 - 144,006,743 (-)NCBICelera
Cytogenetic Map6q24.2NCBI
HuRef6140,638,941 - 140,724,428 (-)NCBIHuRef
CHM1_16143,335,288 - 143,528,914 (-)NCBICHM1_1
T2T-CHM13v2.06143,943,829 - 144,138,128 (-)NCBIT2T-CHM13v2.0
Hivep2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391013,841,819 - 14,027,122 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1013,841,819 - 14,027,118 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381013,961,609 - 14,151,378 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1013,966,075 - 14,151,374 (+)Ensemblmm10GRCm38
MGSCv371013,686,185 - 13,871,184 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361013,656,577 - 13,841,576 (+)NCBIMGSCv36mm8
Celera1013,865,115 - 14,051,975 (+)NCBICelera
Cytogenetic Map10A2NCBI
cM Map105.14NCBI
Hivep2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543617,518,603 - 17,550,790 (+)Ensembl
ChiLan1.0NW_00495543617,368,948 - 17,549,957 (+)NCBIChiLan1.0ChiLan1.0
HIVEP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25162,725,432 - 162,920,256 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16160,620,200 - 160,705,780 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06140,518,954 - 140,712,849 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16145,243,271 - 145,328,852 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6145,240,914 - 145,328,850 (-)EnsemblpanPan2panpan1.1
HIVEP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1134,367,455 - 34,560,277 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl134,369,106 - 34,398,234 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha135,265,065 - 35,457,737 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0134,542,249 - 34,735,165 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl134,542,250 - 34,735,498 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1134,411,412 - 34,603,972 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0134,294,004 - 34,486,563 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0134,605,272 - 34,798,204 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hivep2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946129,334,195 - 129,515,890 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366253,267,947 - 3,301,369 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366253,219,260 - 3,301,361 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HIVEP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl122,412,984 - 22,436,130 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1122,240,681 - 22,436,945 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2124,926,118 - 24,957,537 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HIVEP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11330,476,938 - 30,501,708 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1330,477,205 - 30,500,066 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660402,437,283 - 2,632,922 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hivep2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475311,383,280 - 11,447,934 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475311,263,701 - 11,446,887 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Hivep2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12223,032,374 - 223,229,948 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Hivep2
1236 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:364
Count of miRNA genes:198
Interacting mature miRNAs:261
Transcripts:ENSRNOT00000015131
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1529322934184556Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)1143965634Rat
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1126564886Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1529322934184556Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1126564886Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)1134184556Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1128483164Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1529322934184556Rat

Markers in Region
D1Got8  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,528,113 - 8,528,343 (+)MAPPERmRatBN7.2
Rnor_6.018,306,014 - 8,306,243NCBIRnor6.0
Rnor_5.019,925,820 - 9,926,049UniSTSRnor5.0
RGSC_v3.419,004,475 - 9,004,704UniSTSRGSC3.4
RGSC_v3.419,004,474 - 9,004,704RGDRGSC3.4
Celera17,012,598 - 7,012,840UniSTS
RGSC_v3.119,004,475 - 9,004,704RGD
RH 3.4 Map1102.72UniSTS
RH 3.4 Map1102.72RGD
RH 2.0 Map10.0RGD
Cytogenetic Map1p13UniSTS
D1Got366  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,403,128 - 8,403,253 (+)MAPPERmRatBN7.2
Rnor_6.018,160,094 - 8,160,218NCBIRnor6.0
Rnor_5.019,786,587 - 9,786,711UniSTSRnor5.0
RGSC_v3.418,827,582 - 8,827,706UniSTSRGSC3.4
Celera16,887,822 - 6,887,946UniSTS
Cytogenetic Map1p13UniSTS
RH78408  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,554,880 - 8,555,064 (+)MAPPERmRatBN7.2
Rnor_6.018,332,778 - 8,332,961NCBIRnor6.0
Rnor_5.019,952,584 - 9,952,767UniSTSRnor5.0
RGSC_v3.419,031,239 - 9,031,422UniSTSRGSC3.4
Celera17,039,374 - 7,039,557UniSTS
Cytogenetic Map1p13UniSTS
RH142838  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,369,179 - 8,369,305 (+)MAPPERmRatBN7.2
Rnor_6.018,139,245 - 8,139,370NCBIRnor6.0
Rnor_5.019,765,738 - 9,765,863UniSTSRnor5.0
RGSC_v3.418,792,909 - 8,793,034UniSTSRGSC3.4
Celera16,854,446 - 6,854,571UniSTS
RH 3.4 Map1106.1UniSTS
Cytogenetic Map1p13UniSTS
PMC126259P6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,554,087 - 8,554,185 (+)MAPPERmRatBN7.2
Rnor_6.018,331,985 - 8,332,082NCBIRnor6.0
Rnor_5.019,951,791 - 9,951,888UniSTSRnor5.0
RGSC_v3.419,030,446 - 9,030,543UniSTSRGSC3.4
Celera17,038,581 - 7,038,678UniSTS
Cytogenetic Map1p13UniSTS
RH138492  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,522,314 - 8,522,514 (+)MAPPERmRatBN7.2
Rnor_6.018,300,215 - 8,300,414NCBIRnor6.0
Rnor_5.019,920,021 - 9,920,220UniSTSRnor5.0
RGSC_v3.418,998,676 - 8,998,875UniSTSRGSC3.4
Celera17,006,847 - 7,007,046UniSTS
RH 3.4 Map1100.31UniSTS
Cytogenetic Map1p13UniSTS
BF409594  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8110,281,606 - 10,281,727 (+)Marker Load Pipeline
mRatBN7.218,461,503 - 8,461,624 (+)MAPPERmRatBN7.2
Rnor_6.018,239,758 - 8,239,878NCBIRnor6.0
Rnor_5.019,859,857 - 9,859,977UniSTSRnor5.0
Celera16,946,273 - 6,946,393UniSTS
RH 3.4 Map1106.1UniSTS
Cytogenetic Map1p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001440165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_024137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide D37951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M65251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000015131   ⟹   ENSRNOP00000015131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl110,179,402 - 10,376,089 (+)Ensembl
mRatBN7.2 Ensembl18,359,289 - 8,555,993 (+)Ensembl
Rnor_6.0 Ensembl18,310,577 - 8,333,885 (+)Ensembl
RefSeq Acc Id: NM_024137   ⟹   NP_077051
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,179,402 - 10,376,089 (+)NCBI
mRatBN7.218,359,289 - 8,555,993 (+)NCBI
Rnor_6.018,129,354 - 8,333,890 (+)NCBI
Rnor_5.019,755,847 - 9,953,696 (+)NCBI
RGSC_v3.418,783,016 - 9,032,351 (+)RGD
Celera16,844,547 - 7,040,486 (+)RGD
Sequence:
RefSeq Acc Id: XM_039109863   ⟹   XP_038965791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,176,880 - 10,376,084 (+)NCBI
mRatBN7.218,358,679 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109867   ⟹   XP_038965795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,176,880 - 10,376,084 (+)NCBI
mRatBN7.218,358,678 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109870   ⟹   XP_038965798
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,176,880 - 10,376,084 (+)NCBI
mRatBN7.218,358,693 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109872   ⟹   XP_038965800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,179,008 - 10,376,084 (+)NCBI
mRatBN7.218,359,083 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109882   ⟹   XP_038965810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,176,880 - 10,376,084 (+)NCBI
mRatBN7.218,358,205 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109885   ⟹   XP_038965813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,179,008 - 10,376,084 (+)NCBI
mRatBN7.218,359,084 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109890   ⟹   XP_038965818
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,176,880 - 10,376,084 (+)NCBI
mRatBN7.218,358,219 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_063287884   ⟹   XP_063143954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,231,095 - 10,376,084 (+)NCBI
RefSeq Acc Id: XM_063287903   ⟹   XP_063143973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,176,880 - 10,376,084 (+)NCBI
RefSeq Acc Id: XM_063287906   ⟹   XP_063143976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,179,008 - 10,376,084 (+)NCBI
RefSeq Acc Id: NP_077051   ⟸   NM_024137
- UniProtKB: Q63725 (UniProtKB/Swiss-Prot),   Q00900 (UniProtKB/Swiss-Prot),   A6JP69 (UniProtKB/TrEMBL),   G3V7H8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015131   ⟸   ENSRNOT00000015131
RefSeq Acc Id: XP_038965810   ⟸   XM_039109882
- Peptide Label: isoform X1
- UniProtKB: Q63725 (UniProtKB/Swiss-Prot),   Q00900 (UniProtKB/Swiss-Prot),   G3V7H8 (UniProtKB/TrEMBL),   A6JP69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965818   ⟸   XM_039109890
- Peptide Label: isoform X1
- UniProtKB: Q63725 (UniProtKB/Swiss-Prot),   Q00900 (UniProtKB/Swiss-Prot),   G3V7H8 (UniProtKB/TrEMBL),   A6JP69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965795   ⟸   XM_039109867
- Peptide Label: isoform X1
- UniProtKB: Q63725 (UniProtKB/Swiss-Prot),   Q00900 (UniProtKB/Swiss-Prot),   G3V7H8 (UniProtKB/TrEMBL),   A6JP69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965791   ⟸   XM_039109863
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965798   ⟸   XM_039109870
- Peptide Label: isoform X1
- UniProtKB: Q63725 (UniProtKB/Swiss-Prot),   Q00900 (UniProtKB/Swiss-Prot),   G3V7H8 (UniProtKB/TrEMBL),   A6JP69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965800   ⟸   XM_039109872
- Peptide Label: isoform X1
- UniProtKB: Q63725 (UniProtKB/Swiss-Prot),   Q00900 (UniProtKB/Swiss-Prot),   G3V7H8 (UniProtKB/TrEMBL),   A6JP69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965813   ⟸   XM_039109885
- Peptide Label: isoform X1
- UniProtKB: Q63725 (UniProtKB/Swiss-Prot),   Q00900 (UniProtKB/Swiss-Prot),   G3V7H8 (UniProtKB/TrEMBL),   A6JP69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143973   ⟸   XM_063287903
- Peptide Label: isoform X1
- UniProtKB: Q63725 (UniProtKB/Swiss-Prot),   Q00900 (UniProtKB/Swiss-Prot),   A6JP69 (UniProtKB/TrEMBL),   G3V7H8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143976   ⟸   XM_063287906
- Peptide Label: isoform X1
- UniProtKB: Q63725 (UniProtKB/Swiss-Prot),   Q00900 (UniProtKB/Swiss-Prot),   A6JP69 (UniProtKB/TrEMBL),   G3V7H8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143954   ⟸   XM_063287884
- Peptide Label: isoform X1
Protein Domains
C2H2-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:61988 AgrOrtholog
BioCyc Gene G2FUF-62354 BioCyc
Ensembl Genes ENSRNOG00000011015 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000015131 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot
InterPro Zinc-finger_DNA-bd_regulators UniProtKB/Swiss-Prot
  Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report rno:29721 UniProtKB/Swiss-Prot
NCBI Gene 29721 ENTREZGENE
PANTHER SCHNURRI, ISOFORM F UniProtKB/Swiss-Prot
  TRANSCRIPTION FACTOR HIVEP2 UniProtKB/Swiss-Prot
Pfam zf-C2H2 UniProtKB/Swiss-Prot
PhenoGen Hivep2 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000011015 RatGTEx
SMART ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot
TIGR TC230705
UniProt A6JP69 ENTREZGENE, UniProtKB/TrEMBL
  G3V7H8 ENTREZGENE, UniProtKB/TrEMBL
  Q00900 ENTREZGENE
  Q63725 ENTREZGENE
  ZEP2_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q63725 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-13 Hivep2  HIVEP zinc finger 2  Hivep2  human immunodeficiency virus type I enhancer binding protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Hivep2  human immunodeficiency virus type I enhancer binding protein 2    human immunodeficiency virus type 1 enhancer-binding protein 2   Name updated 1299863 APPROVED
2002-06-10 Hivep2  human immunodeficiency virus type 1 enhancer-binding protein 2       Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains contains two zinc finger domains 61627