Hivep2 (HIVEP zinc finger 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Hivep2 (HIVEP zinc finger 2) Rattus norvegicus
Analyze
Symbol: Hivep2
Name: HIVEP zinc finger 2
RGD ID: 61988
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 43. Orthologous to human HIVEP2 (HIVEP zinc finger 2); INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: angiotensinogen gene-inducible enhancer-binding protein 1; c-myc intron binding protein 1; DNA-binding protein AGIE-BP1; human immunodeficiency virus type 1 enhancer-binding protein 2; human immunodeficiency virus type I enhancer binding protein 2; human immunodeficiency virus type I enhancer-binding protein 2; human immunodeficiency virus type I enhancer-binding protein 2 homolog; MIBP-1; MIBP1; myc intron-binding protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8110,176,880 - 10,376,089 (+)NCBIGRCr8
mRatBN7.218,358,205 - 8,555,993 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl18,359,289 - 8,555,993 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx18,074,215 - 8,272,890 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0114,073,360 - 14,272,030 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.018,341,455 - 8,537,959 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.018,129,354 - 8,333,890 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl18,310,577 - 8,333,885 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.019,755,847 - 9,953,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.418,783,016 - 9,032,351 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.118,783,015 - 9,032,351 (+)NCBI
Celera16,844,547 - 7,040,486 (+)NCBICelera
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-butoxyethanol  (ISO)
3',5'-cyclic AMP  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxynon-2-enal  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
arsenite(3-)  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP)
bisphenol F  (EXP)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dichloromethane  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
ethylbenzene  (ISO)
flavonoids  (EXP)
fluoranthene  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (EXP)
graphite  (EXP)
inulin  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
maneb  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
N-methyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (EXP)
nickel dichloride  (ISO)
niclosamide  (ISO)
o-xylene  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
quercetin  (ISO)
quinolin-8-ol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sotorasib  (ISO)
testosterone enanthate  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
toluene  (ISO)
trametinib  (ISO)
trichloroethene  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Activation of somatostatin receptor II expression by transcription factors MIBP1 and SEF-2 in the murine brain. Dörflinger U, etal., Mol Cell Biol. 1999 May;19(5):3736-47.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Cloning and characterization of a c-myc intron binding protein (MIBP1). Makino R, etal., Nucleic Acids Res 1994 Dec 25;22(25):5679-85.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Angiotensinogen gene-inducible enhancer-binding protein 1, a member of a new family of large nuclear proteins that recognize nuclear factor kappa B-binding sites through a zinc finger motif. Ron D, etal., Mol Cell Biol 1991 May;11(5):2887-95.
11. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Genomics

Comparative Map Data
Hivep2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8110,176,880 - 10,376,089 (+)NCBIGRCr8
mRatBN7.218,358,205 - 8,555,993 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl18,359,289 - 8,555,993 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx18,074,215 - 8,272,890 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0114,073,360 - 14,272,030 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.018,341,455 - 8,537,959 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.018,129,354 - 8,333,890 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl18,310,577 - 8,333,885 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.019,755,847 - 9,953,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.418,783,016 - 9,032,351 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.118,783,015 - 9,032,351 (+)NCBI
Celera16,844,547 - 7,040,486 (+)NCBICelera
Cytogenetic Map1p13NCBI
HIVEP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386142,751,469 - 142,946,365 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6142,751,469 - 142,956,698 (-)EnsemblGRCh38hg38GRCh38
GRCh376143,072,606 - 143,266,313 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366143,114,297 - 143,308,031 (-)NCBINCBI36Build 36hg18NCBI36
Build 346143,114,298 - 143,137,675NCBI
Celera6143,813,124 - 144,006,743 (-)NCBICelera
Cytogenetic Map6q24.2NCBI
HuRef6140,638,941 - 140,724,428 (-)NCBIHuRef
CHM1_16143,335,288 - 143,528,914 (-)NCBICHM1_1
T2T-CHM13v2.06143,943,829 - 144,138,712 (-)NCBIT2T-CHM13v2.0
Hivep2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391013,841,819 - 14,027,122 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1013,841,819 - 14,027,118 (+)EnsemblGRCm39 Ensembl
GRCm381013,961,609 - 14,151,378 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1013,966,075 - 14,151,374 (+)EnsemblGRCm38mm10GRCm38
MGSCv371013,686,185 - 13,871,184 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361013,656,577 - 13,841,576 (+)NCBIMGSCv36mm8
Celera1013,865,115 - 14,051,975 (+)NCBICelera
Cytogenetic Map10A2NCBI
cM Map105.14NCBI
Hivep2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543617,518,603 - 17,550,790 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543617,368,948 - 17,549,957 (+)NCBIChiLan1.0ChiLan1.0
HIVEP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25162,725,432 - 162,920,256 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16160,620,200 - 160,705,780 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06140,518,954 - 140,712,849 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16145,243,271 - 145,328,852 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6145,240,914 - 145,328,850 (-)Ensemblpanpan1.1panPan2
HIVEP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1134,367,455 - 34,560,277 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl134,369,106 - 34,398,234 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha135,265,065 - 35,457,737 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0134,542,249 - 34,735,165 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl134,542,250 - 34,735,498 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1134,411,412 - 34,603,972 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0134,294,004 - 34,486,563 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0134,605,272 - 34,798,204 (-)NCBIUU_Cfam_GSD_1.0
Hivep2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946129,334,195 - 129,515,890 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366253,267,947 - 3,301,369 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366253,219,260 - 3,301,361 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HIVEP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl122,412,984 - 22,436,130 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1122,240,681 - 22,436,945 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2124,926,118 - 24,957,537 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HIVEP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11330,476,938 - 30,501,708 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1330,477,205 - 30,500,066 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660402,437,283 - 2,632,922 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hivep2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475311,383,280 - 11,447,934 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475311,263,701 - 11,446,887 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hivep2
1221 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:364
Count of miRNA genes:198
Interacting mature miRNAs:261
Transcripts:ENSRNOT00000015131
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1416280711481482Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat

Markers in Region
D1Got8  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,528,113 - 8,528,343 (+)MAPPERmRatBN7.2
Rnor_6.018,306,014 - 8,306,243NCBIRnor6.0
Rnor_5.019,925,820 - 9,926,049UniSTSRnor5.0
RGSC_v3.419,004,474 - 9,004,704RGDRGSC3.4
RGSC_v3.419,004,475 - 9,004,704UniSTSRGSC3.4
RGSC_v3.119,004,475 - 9,004,704RGD
Celera17,012,598 - 7,012,840UniSTS
RH 3.4 Map1102.72UniSTS
RH 3.4 Map1102.72RGD
RH 2.0 Map10.0RGD
Cytogenetic Map1p13UniSTS
D1Got366  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,403,128 - 8,403,253 (+)MAPPERmRatBN7.2
Rnor_6.018,160,094 - 8,160,218NCBIRnor6.0
Rnor_5.019,786,587 - 9,786,711UniSTSRnor5.0
RGSC_v3.418,827,582 - 8,827,706UniSTSRGSC3.4
Celera16,887,822 - 6,887,946UniSTS
Cytogenetic Map1p13UniSTS
RH78408  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,554,880 - 8,555,064 (+)MAPPERmRatBN7.2
Rnor_6.018,332,778 - 8,332,961NCBIRnor6.0
Rnor_5.019,952,584 - 9,952,767UniSTSRnor5.0
RGSC_v3.419,031,239 - 9,031,422UniSTSRGSC3.4
Celera17,039,374 - 7,039,557UniSTS
Cytogenetic Map1p13UniSTS
RH142838  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,369,179 - 8,369,305 (+)MAPPERmRatBN7.2
Rnor_6.018,139,245 - 8,139,370NCBIRnor6.0
Rnor_5.019,765,738 - 9,765,863UniSTSRnor5.0
RGSC_v3.418,792,909 - 8,793,034UniSTSRGSC3.4
Celera16,854,446 - 6,854,571UniSTS
RH 3.4 Map1106.1UniSTS
Cytogenetic Map1p13UniSTS
PMC126259P6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,554,087 - 8,554,185 (+)MAPPERmRatBN7.2
Rnor_6.018,331,985 - 8,332,082NCBIRnor6.0
Rnor_5.019,951,791 - 9,951,888UniSTSRnor5.0
RGSC_v3.419,030,446 - 9,030,543UniSTSRGSC3.4
Celera17,038,581 - 7,038,678UniSTS
Cytogenetic Map1p13UniSTS
RH138492  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,522,314 - 8,522,514 (+)MAPPERmRatBN7.2
Rnor_6.018,300,215 - 8,300,414NCBIRnor6.0
Rnor_5.019,920,021 - 9,920,220UniSTSRnor5.0
RGSC_v3.418,998,676 - 8,998,875UniSTSRGSC3.4
Celera17,006,847 - 7,007,046UniSTS
RH 3.4 Map1100.31UniSTS
Cytogenetic Map1p13UniSTS
BF409594  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,461,503 - 8,461,624 (+)MAPPERmRatBN7.2
Rnor_6.018,239,758 - 8,239,878NCBIRnor6.0
Rnor_5.019,859,857 - 9,859,977UniSTSRnor5.0
Celera16,946,273 - 6,946,393UniSTS
RH 3.4 Map1106.1UniSTS
Cytogenetic Map1p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000015131   ⟹   ENSRNOP00000015131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl18,359,289 - 8,555,993 (+)Ensembl
Rnor_6.0 Ensembl18,310,577 - 8,333,885 (+)Ensembl
RefSeq Acc Id: NM_024137   ⟹   NP_077051
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,179,402 - 10,376,089 (+)NCBI
mRatBN7.218,359,289 - 8,555,993 (+)NCBI
Rnor_6.018,129,354 - 8,333,890 (+)NCBI
Rnor_5.019,755,847 - 9,953,696 (+)NCBI
RGSC_v3.418,783,016 - 9,032,351 (+)RGD
Celera16,844,547 - 7,040,486 (+)RGD
Sequence:
RefSeq Acc Id: XM_039109863   ⟹   XP_038965791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,176,880 - 10,376,084 (+)NCBI
mRatBN7.218,358,679 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109867   ⟹   XP_038965795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,176,880 - 10,376,084 (+)NCBI
mRatBN7.218,358,678 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109870   ⟹   XP_038965798
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,176,880 - 10,376,084 (+)NCBI
mRatBN7.218,358,693 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109872   ⟹   XP_038965800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,179,008 - 10,376,084 (+)NCBI
mRatBN7.218,359,083 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109882   ⟹   XP_038965810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,176,880 - 10,376,084 (+)NCBI
mRatBN7.218,358,205 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109885   ⟹   XP_038965813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,179,008 - 10,376,084 (+)NCBI
mRatBN7.218,359,084 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109890   ⟹   XP_038965818
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,176,880 - 10,376,084 (+)NCBI
mRatBN7.218,358,219 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_063287884   ⟹   XP_063143954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,231,095 - 10,376,084 (+)NCBI
RefSeq Acc Id: XM_063287903   ⟹   XP_063143973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,176,880 - 10,376,084 (+)NCBI
RefSeq Acc Id: XM_063287906   ⟹   XP_063143976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8110,179,008 - 10,376,084 (+)NCBI
RefSeq Acc Id: NP_077051   ⟸   NM_024137
- UniProtKB: Q63725 (UniProtKB/Swiss-Prot),   Q00900 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015131   ⟸   ENSRNOT00000015131
RefSeq Acc Id: XP_038965810   ⟸   XM_039109882
- Peptide Label: isoform X1
- UniProtKB: G3V7H8 (UniProtKB/TrEMBL),   A6JP69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965818   ⟸   XM_039109890
- Peptide Label: isoform X1
- UniProtKB: G3V7H8 (UniProtKB/TrEMBL),   A6JP69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965795   ⟸   XM_039109867
- Peptide Label: isoform X1
- UniProtKB: G3V7H8 (UniProtKB/TrEMBL),   A6JP69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965791   ⟸   XM_039109863
- Peptide Label: isoform X1
- UniProtKB: G3V7H8 (UniProtKB/TrEMBL),   A6JP69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965798   ⟸   XM_039109870
- Peptide Label: isoform X1
- UniProtKB: G3V7H8 (UniProtKB/TrEMBL),   A6JP69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965800   ⟸   XM_039109872
- Peptide Label: isoform X1
- UniProtKB: G3V7H8 (UniProtKB/TrEMBL),   A6JP69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965813   ⟸   XM_039109885
- Peptide Label: isoform X1
- UniProtKB: G3V7H8 (UniProtKB/TrEMBL),   A6JP69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143973   ⟸   XM_063287903
- Peptide Label: isoform X1
- UniProtKB: A6JP69 (UniProtKB/TrEMBL),   G3V7H8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143976   ⟸   XM_063287906
- Peptide Label: isoform X1
- UniProtKB: A6JP69 (UniProtKB/TrEMBL),   G3V7H8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143954   ⟸   XM_063287884
- Peptide Label: isoform X1
- UniProtKB: A6JP69 (UniProtKB/TrEMBL),   G3V7H8 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:61988 AgrOrtholog
BioCyc Gene G2FUF-62354 BioCyc
Ensembl Genes ENSRNOG00000011015 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00055001702 UniProtKB/Swiss-Prot
  ENSRNOG00060005561 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000015131.5 UniProtKB/TrEMBL
  ENSRNOT00055002739 UniProtKB/Swiss-Prot
  ENSRNOT00060009226 UniProtKB/Swiss-Prot
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Zinc-finger_DNA-bd_regulators UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29721 UniProtKB/Swiss-Prot
NCBI Gene 29721 ENTREZGENE
PANTHER SCHNURRI, ISOFORM F UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR HIVEP2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hivep2 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011015 RatGTEx
  ENSRNOG00055001702 RatGTEx
  ENSRNOG00060005561 RatGTEx
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC230705
UniProt A6JP69 ENTREZGENE, UniProtKB/TrEMBL
  G3V7H8 ENTREZGENE, UniProtKB/TrEMBL
  Q00900 ENTREZGENE
  Q63725 ENTREZGENE
  ZEP2_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q63725 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-13 Hivep2  HIVEP zinc finger 2  Hivep2  human immunodeficiency virus type I enhancer binding protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Hivep2  human immunodeficiency virus type I enhancer binding protein 2    human immunodeficiency virus type 1 enhancer-binding protein 2   Name updated 1299863 APPROVED
2002-06-10 Hivep2  human immunodeficiency virus type 1 enhancer-binding protein 2       Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains contains two zinc finger domains 61627