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Gene: Slc23a2 (solute carrier family 23 member 2) Rattus norvegicus

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Symbol:

Slc23a2

Name:

solute carrier family 23 member 2

RGD ID:

619876

Description:

Enables L-ascorbate:sodium symporter activity and L-ascorbic acid transmembrane transporter activity. Involved in several processes, including L-ascorbic acid transmembrane transport; cellular response to ethanol; and positive regulation of dendrite extension. Located in basal plasma membrane and cytoplasm. Orthologous to human SLC23A2 (solute carrier family 23 member 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-amino-2-deoxy-D-glucopyranose; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

na(+)/L-ascorbic acid transporter 2; sodium-coupled ascorbic acid transporter 2; sodium-dependent vitamin C transporter 2; solute carrier family 23 (ascorbic acid transporter), member 2; solute carrier family 23 (nucleobase transporters), member 2; SVCT2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC23A2 (solute carrier family 23 member 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Slc23a2 (solute carrier family 23 (nucleobase transporters), member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc23a2 (solute carrier family 23 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC23A2 (solute carrier family 23 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC23A2 (solute carrier family 23 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc23a2 (solute carrier family 23 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC23A2 (solute carrier family 23 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC23A2 (solute carrier family 23 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc23a2 (solute carrier family 23 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Slc23a2 (solute carrier family 23 (nucleobase transporters), member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SLC23A2 (solute carrier family 23 member 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc23a2 (solute carrier family 23 member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C51E3.6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG6293	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	R11E3.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	T07G12.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	T07G12.2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T07G12.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T07G12.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y59E9AL.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc23a2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc23a2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	139,755,583 - 139,913,304 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	139,755,584 - 139,847,343 (-)	Ensembl				GRCr8
mRatBN7.2	3	119,302,651 - 119,395,289 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	119,302,666 - 119,460,343 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	123,206,656 - 123,298,423 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	131,793,663 - 131,885,649 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	129,462,752 - 129,554,530 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	124,632,491 - 124,842,225 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	124,632,492 - 124,724,252 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	131,132,124 - 131,266,028 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	119,796,376 - 119,886,011 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	118,102,047 - 118,150,099 (-)	NCBI		Celera
RGSC_v3.1	3	119,701,948 - 119,791,584 (-)	NCBI
Cytogenetic Map	3	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Binge Drinking (IEP)

cholestasis (ISO)

Huntington's disease-like 1 (ISO)

Inosine Triphosphatase Deficiency (ISO)

pantothenate kinase-associated neurodegeneration (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-amino-2-deoxy-D-glucopyranose (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aldehydo-D-glucosamine (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

beta-D-glucosamine (EXP)

bilirubin IXalpha (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calcium atom (ISO)

calcium(0) (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroprene (EXP)

cisplatin (ISO)

cobalt dichloride (ISO)

cortisol (ISO)

cyclosporin A (ISO)

cyproconazole (ISO)

dexamethasone (ISO)

dichloroacetic acid (ISO)

diclofenac (ISO)

dicrotophos (ISO)

dioxygen (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

furan (ISO)

genistein (ISO)

gentamycin (EXP)

graphite (EXP)

hexadecanoic acid (ISO)

hypochlorous acid (ISO)

indometacin (ISO)

iron atom (EXP)

iron(0) (EXP)

L-ascorbic acid (EXP,ISO)

lead(0) (ISO)

leflunomide (ISO)

levetiracetam (EXP)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

morphine (EXP)

nickel sulfate (ISO)

nifedipine (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

phenobarbital (ISO)

phosphonoformic acid (ISO)

pirinixic acid (ISO)

progesterone (ISO)

propiconazole (ISO)

quercetin (ISO)

rifampicin (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

sunitinib (ISO)

taurocholic acid (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

toluene (EXP)

trichloroethene (EXP,ISO)

trichostatin A (ISO)

troglitazone (ISO)

tunicamycin (ISO)

ursodeoxycholic acid (ISO)

valproic acid (EXP,ISO)

zidovudine (ISO)

zinc atom (ISO)

zinc(0) (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blood circulation (IEA,ISO)

cell adhesion (IEA)

cellular response to ethanol (IEP)

L-ascorbic acid metabolic process (IMP)

L-ascorbic acid transmembrane transport (IBA,IDA,IEA,IMP,ISO)

monoatomic ion transport (IEA)

negative regulation of cellular process (IMP)

positive regulation of dendrite extension (IMP)

response to oxidative stress (IEP)

sodium ion transport (IEA)

transmembrane transport (IEA)

Cellular Component

apical plasma membrane (IBA,IEA,ISO)

basal plasma membrane (IDA,IEA,ISO)

basolateral plasma membrane (IEA,ISO)

cytoplasm (IDA,IEA,ISO)

membrane (IEA)

plasma membrane (IEA,ISO)

Molecular Function

L-ascorbate:sodium symporter activity (IBA,IDA,IEA,IMP,ISO,TAS)

L-ascorbic acid transmembrane transporter activity (IBA,IDA,IEA,ISO)

protein binding (ISO)

symporter activity (IEA)

transmembrane transporter activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Molecular identification and functional characterization of the vitamin C transporters expressed by Sertoli cells.	Angulo C, etal., J Cell Physiol. 2008 Dec;217(3):708-16. doi: 10.1002/jcp.21545.
2.	Effect of middle cerebral artery occlusion on mRNA expression for the sodium-coupled vitamin C transporter SVCT2 in rat brain.	Berger UV, etal., J Neurochem. 2003 Aug;86(4):896-906.
3.	Genetic variation in the sodium-dependent vitamin C transporters, SLC23A1, and SLC23A2 and risk for preterm delivery.	Erichsen HC, etal., Am J Epidemiol. 2006 Feb 1;163(3):245-54. Epub 2005 Dec 15.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	GOA pipeline	RGD automated data pipeline
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	SVCT2, a potential therapeutic target, protects against oxidative stress during ethanol-induced neurotoxicity via JNK/p38 MAPKs, NF-κB and miRNA125a-5p.	Tian H, etal., Free Radic Biol Med. 2016 Jul;96:362-73. doi: 10.1016/j.freeradbiomed.2016.03.039. Epub 2016 Apr 13.
11.	A family of mammalian Na+-dependent L-ascorbic acid transporters.	Tsukaguchi H, etal., Nature 1999 May 6;399(6731):70-5.

Additional References at PubMed

PMID:8889548	PMID:10471399	PMID:10556521	PMID:10631088	PMID:11984597	PMID:12559983	PMID:15333707	PMID:15993839	PMID:18247577	PMID:18417304	PMID:19216494	PMID:19418264
PMID:21733302	PMID:22348976	PMID:22763122	PMID:23708151	PMID:24739976	PMID:28942474

Genomics

Comparative Map Data

Slc23a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	139,755,583 - 139,913,304 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	139,755,584 - 139,847,343 (-)	Ensembl				GRCr8
mRatBN7.2	3	119,302,651 - 119,395,289 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	119,302,666 - 119,460,343 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	123,206,656 - 123,298,423 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	131,793,663 - 131,885,649 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	129,462,752 - 129,554,530 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	124,632,491 - 124,842,225 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	124,632,492 - 124,724,252 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	131,132,124 - 131,266,028 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	119,796,376 - 119,886,011 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	118,102,047 - 118,150,099 (-)	NCBI		Celera
RGSC_v3.1	3	119,701,948 - 119,791,584 (-)	NCBI
Cytogenetic Map	3	q36	NCBI

SLC23A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	4,852,358 - 5,010,313 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	4,852,356 - 5,010,293 (-)	Ensembl			hg38	GRCh38
GRCh37	20	4,833,004 - 4,990,959 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	4,781,002 - 4,938,939 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	4,781,001 - 4,938,939	NCBI
Celera	20	4,902,706 - 5,051,861 (-)	NCBI		Celera
Cytogenetic Map	20	p13	NCBI
HuRef	20	4,787,194 - 4,944,817 (-)	NCBI		HuRef
CHM1_1	20	4,834,496 - 4,992,439 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	4,891,820 - 5,049,741 (-)	NCBI		T2T-CHM13v2.0

Slc23a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	131,894,416 - 131,987,287 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	131,894,416 - 131,987,028 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	132,052,496 - 132,145,320 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	132,052,496 - 132,145,108 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	131,878,232 - 131,970,844 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	131,743,937 - 131,836,549 (-)	NCBI		MGSCv36	mm8
Celera	2	133,279,011 - 133,328,217 (-)	NCBI		Celera
Cytogenetic Map	2	F2	NCBI
cM Map	2	64.15	NCBI

Slc23a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	15,565,249 - 15,642,153 (-)	Ensembl
ChiLan1.0	NW_004955415	15,565,344 - 15,677,935 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC23A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	5,801,682 - 6,017,566 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	5,798,507 - 6,014,383 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	4,874,185 - 5,024,750 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	4,670,294 - 4,790,800 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	4,670,294 - 4,790,800 (-)	Ensembl			panPan2	panpan1.1

SLC23A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	16,573,616 - 16,709,296 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	16,574,168 - 16,709,296 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	16,425,818 - 16,531,856 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	16,981,643 - 17,127,359 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	16,990,701 - 17,127,359 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	16,613,514 - 16,719,979 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	16,720,357 - 16,826,526 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	17,054,182 - 17,160,266 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slc23a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	165,431,608 - 165,545,259 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	13,885,091 - 13,976,550 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936485	13,885,067 - 13,976,623 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC23A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	13,848,728 - 14,011,700 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	13,848,726 - 14,012,054 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	14,819,223 - 14,825,302 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC23A2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	33,092,619 - 33,209,258 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	33,128,061 - 33,212,255 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666071	11,323,229 - 11,470,263 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc23a2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	5,917,019 - 6,000,720 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624741	5,917,620 - 6,050,922 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc23a2
328 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	422
Count of miRNA genes:	246
Interacting mature miRNAs:	294
Transcripts:	ENSRNOT00000028885
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	84091273	129091273	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	91797474	136797474	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
1358204	Insglur1	Insulin/glucose ratio QTL 1	3.8		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	3	115638168	135181505	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	118839124	163839124	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	107693393	152693393	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	112287552	135181505	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	95735366	140735366	Rat

Markers in Region

BF410351

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	3	131,214,266 - 131,214,464	UniSTS	Rnor5.0
Rnor_5.0	3	131,254,981 - 131,255,179	UniSTS	Rnor5.0
RGSC_v3.4	3	119,875,549 - 119,875,747	UniSTS	RGSC3.4
Celera	3	118,183,252 - 118,183,450	UniSTS
RH 3.4 Map	3	1023.4	UniSTS
Cytogenetic Map	3	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_017316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA964954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC103170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC109886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF080453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000028885 ⟹ ENSRNOP00000028885

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	119,302,666 - 119,460,343 (-)	Ensembl
Rnor_6.0 Ensembl	3	124,632,492 - 124,724,252 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000121077 ⟹ ENSRNOP00000098618

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	139,755,584 - 139,847,343 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000121079 ⟹ ENSRNOP00000098620

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	139,755,584 - 139,794,130 (-)	Ensembl

RefSeq Acc Id:

NM_017316 ⟹ NP_059012

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	139,755,583 - 139,847,343 (-)	NCBI
mRatBN7.2	3	119,302,651 - 119,394,413 (-)	NCBI
Rnor_6.0	3	124,632,491 - 124,724,252 (-)	NCBI
Rnor_5.0	3	131,132,124 - 131,266,028 (-)	NCBI
RGSC_v3.4	3	119,796,376 - 119,886,011 (-)	RGD
Celera	3	118,102,047 - 118,150,099 (-)	NCBI

Sequence:

show sequence

CGGCGGCAGGCACTGCGGCGCGAGCGGTGCGATCGGCGGGACGCGAGCCCAGCGAGCTGCAGGC
AGGTGATAAGCGATGACAGTAATCTGCGTCTGAGGATCCAGTGTTCCAGGTGCTAAAAGCTGCC
TCTGGTCTTAGACCCCTGCCTTGCATACGCCTTCCCTGCAAGCACTCCAGGCCACAGTTTGTAG
GCTGCTCAGCCTGCCTTGATGATGGGTGTCGGCAAGAACACATCAAAGTCGGTGGAGGTTGGGG
GCTCCACAGAAGGCAAATATGAAGAGGAGGCCAAGCGCCCCGATTTCTTTACTCTCCCGGTGGT
GATCAATGGTGGGGCCACGTCCAGTGGAGAACAGGACAATGAAGACACTGAGCTCATGGCCATC
TACACCACAGAGAATGGCATTGCAGAGAAGAGCTCTCTCGCAGAGACCCTGGACAGCACTGGGA
GCCTGGATCCCCAGAGGTCAGATATGATCTACACTATAGAAGACGTTCCTCCCTGGTACTTATG
CATATTCCTGGGGTTGCAGCACTACCTGACGTGTTTCAGTGGCACAATCGCAGTGCCCTTTTTG
CTGGCTGATGCCATGTGCGTGGGGGATGACCAGTGGGCCACCAGCCAGCTCATCGGGACCATTT
TCTTCTGCGTGGGAATCACTACATTGCTGCAGACAACATTTGGATGCAGGTTACCCCTGTTTCA
GGCCAGTGCTTTTGCATTTTTGGCCCCTGCTCGAGCCATCCTGTCTTTAGATAAATGGAAATGT
AACACCACAGAGATCACAGTTGCCAACGGAACGGCAGAGCTGTTGGAACACATCTGGCACCCCC
GGATCCAAGAGATCCAGGGGGCTATAATCATGTCCTCACTGATAGAAGTGGTCATTGGCCTCCT
TGGCCTGCCTGGGGCTCTGCTGAGGTATATTGGACCCTTGACCATCACACCCACCGTGGCCCTC
ATTGGCCTCTCTGGTTTCCAGGCAGCAGGAGAGCGAGCTGGGAAGCACTGGGGCATTGCCATGC
TGACAATTTTCCTAGTGTTACTATTCTCACAATATGCCAGAAATGTTAAATTTCCTCTCCCAAT
CTACAAATCCAAGAAAGGATGGACGGCCTACAAGTTACAACTTTTCAAAATGTTTCCTATAATC
CTGGCTATCCTCGTGTCCTGGCTGCTGTGCTTCATCTTCACGGTGACTGACGTCTTCCCTTCCA
ACAGCACCGACTATGGCTACTATGCACGCACAGATGCCAGGAAGGGCGTACTTCTGGTAGCCCC
ATGGTTTAAGGTTCCATACCCATTTCAGTGGGGGATGCCCACCGTCTCTGCAGCTGGCGTCATT
GGCATGCTCAGTGCTGTCGTAGCCAGTATCATTGAGTCCATCGGCGACTACTATGCCTGCGCCA
GGCTCTCCTGTGCCCCACCACCTCCTATACATGCAATAAACAGGGGTATTTTTGTGGAGGGTCT
TTCTTGTGTTCTCGATGGCGTATTTGGTACCGGGAATGGCTCTACCTCCTCCAGTCCCAATATT
GGAGTTTTGGGAATTACAAAGGTTGGCAGCCGCCGAGTGATCCAGTATGGTGCAGCTCTCATGC
TGGGCTTGGGCATGATTGGCAAGTTCAGCGCCCTCTTCGCCTCCCTCCCAGACCCTGTACTCGG
AGCCCTCTTCTGCACACTCTTTGGAATGATCACAGCTGTTGGCCTCTCTAACCTGCAGTTCATT
GACTTGAATTCTTCCCGGAACCTATTTGTGCTTGGATTTTCCATCTTCTTTGGGCTTGTTCTTC
CAAGTTACCTCAGACAAAACCCTCTGGTTACAGGCATAACAGGCATTGATCAAGTTCTGAATGT
CCTTCTCACCACTGCTATGTTCGTCGGAGGCTGTGTGGCTTTTATTTTGGACAACACCATCCCA
GGAACCCCAGAGGAAAGAGGAATCAAGAAATGGAAGAAGGGTGTGAGCAAAGGAAACAAGTCTC
TTGACGGCATGGAGTCCTATAATTTGCCATTTGGCATGAACATTATTAAAAAATACAGATGCTT
CAGCTACCTGCCTATCAGCCCAACCTTTGCAGGTTACACATGGAAAGGCTTTGGGAAGAGTGAG
AACAGGCGGAGTTCAGACAAAGACTCCCAGGCCACAGTATAGCCTTTGCTGTGTCCTGTGGCCT
GGCCACAGTACGGCATGCATCTGTAGTTCCTTGCTGAATAACAAGAAGATATATGTTTGTATAT
CTATCTACATGGCATCCTGTACCTCAGAGCTAAGACAGGTTGCATATCACTCTTCTGTTGTGGG
TGGTGATTATGTCCAATATGGTGTCTCACTTGTGTCCTTATTGATCCCTTACCCGTTTTGTGTC
CATTGCTGGCCATGGTCACTGAACTTGAAATCACAGTCCTGCCATTGGAGTGGGCATTTGGAAT
CTATAGTGCTCCTGCCTTCAAGTGCTCTCTTTCTTACAAGCTGCTTCGAGGTCTAGGGGTTTCT
GCTTCTTAAACACTATGTCCCAGTCTTCCCATGTGACCTCAGCCTGAACCCTGTGGAGACCTCC
TCTGGCCAGGGGCCACTGGTGTCCTTACTTTGTTGTGATTCTATTATCCTTGATAGCCCAGGAG
CCTACTGACCTGACTGAGAATAATGACATGTCTGTCCTGTGACCAGATATGAGTGTGCATAAGG
TCCTGTATAGCTGTGACTGGGGGAGCTCTGGTTAGGAGATTGACAGGGAGTAGAACGATCCTGA
GTCAGTGGGATTCTCAACCATGCTCCCCCCTCGTCACCCTGGACCCATCTGGGCCAGCACAGTT
CATACTAGTCTCTTTCTGGCCGAGACACCCTATTTGGCATTTTCACTGCTGGCTGGTGTGATGG
GTGTTAGAGTGCCCACAGGTAGTCTGTGGGTGTCTTGGCTCTGCTGCCCTGTATTTGCGTGTGT
TTTATTCCTATTTAATGTTATTGACTATAGCGGATTTTTGAAATCAGTGTTTTCCGTGTGAACT
TCCAACCTTGCATCCTGTTCCTTGGCCTGTACTCTTTACTCCATTGAGAAAAGAACCAGCGTCT
GTAAAAGCTGTGGGTGCCATCAGGGAAGCTTCTTGTGTCGGCTGTTGAAAGCCAGTGACAGTTG
TTGTGGGTGTGTTTTGTACTGCTCTATACCATGAAAGTGTAAATACTGTAGTGTCTAATCTATT
TATCACAACTGACTACTGGACCAGGGCCCAGAAACATGGGTCAAGTTACACGTGAATTTGTTTG
GTGAAGAAGGGAAGCTGGGGCAGCGACAGCATCAGCACGTGGGATGTGCCGTTGTCTAAGCCGC
TCCTTCCTCCTGTTGCACGTCATTGCTGACAGAGCTGACTTAATGACTGTGTGGGTTGTCAGGT
CACATATCCACTGGATGTAGATTCTTACAGAGGGAAGATTTGACCCCTTAGTCAAATAGCCTAT
GGGATTTGTTACAGATGATAGCAGAAAAGCAGCCTTTGGGTGCCCTCTGTGAAAGAGTTCTAAC
TTGGAAAACAAACTCCCACAGACAAATGACTTGTACTGAATCTGGTTTTGGTTTCCAAGCCAAG
GGCAAAGCTGAAGACATGAGAATGCCCTTGCTTCTTGAGGTTGTACCTCTTAAGTGGCTGTGGA
CCTGGCTGAACTGTGGGTGGCAGTGGGCATCCCCGTCACCCTTAGCAAGGTGTGGTTGGTTCTC
AGTGCCTGTCCATGGTATGTGTTTCTGTGCCCAGGATAGCTCAGTGTCCCCATGTTACCAGGTC
TTTGTGTTTCTGCAGCCCTCACGACCCTTGAGAGTTTTGGGTTGCAGTCACACCTCAGAGCCAC
TGCATTGTTTTGCCAAAATCTTACTCCAGATTAAGTTCGGGACTTGGTTTCTAACTGTATTTAG
TTTTGATGGTTTATATTCAGACAATTAGTGCTTTGGAAGCACATTGTTGAGTAGCCTTTTGTCC
CTCCTTCTTAGCAAGCCCATTTGGCTGACAGCTCTCCTGCTCTGCGTTCACTCTGTGCCTCCAT
TTGCATTTTGCTTAGTTGACCCAGTTTCTCTGACAAGGTAGAAAACTGGCAAGCATCTCAGATC
TGTAGTATTGTGGTGCTGTGGTGGGCAGGAGCAGGAGTCCATCCAGAAGCGTGAGAACGAACGG
GCTGTAATCCAGGCCGTGCCCTGCCACTTATGCTGTACTGCCGAGTGCCACCCGAGGCTTCTAT
TGGCTGTAGTTTGCTCTGGGGCTTTCACAGTTGAATCCTGGAGCCTGGGCTCAGCAGGTATCTG
TGTGGCCAAGGAAGTGCTATGCCAACATCTTCCATTAGAATCAGGGTTTCCCCTTCTTGCTTCA
TCAGAGCCAACTTTTGATATTCTTGGAAGGGGACAGGAGGTAGGAACAAAGAGAGAAGTAGCCT
ACGCGTGCACCCCCAGGGTGGGGTACTGTCCACAGTGCCCTGGGTGACTAGTACCTTGTAACCA
CTGGTAAGGTTTGTCCTTGAAGCTTGTGGTCCTCCCAACATATAGGGAATGTGTGTTTATGTAC
CAGATGGGAATTTTTAGGGGACATGGTGACTGTGTGATCTCTTTGTCCAGTGTTGGCCCTCGGT
ACTAGAACTTGGAGTTGCTCTGTTTGGTTACCAGTGGACTGTTTTTCAGATGTGAGCATCTTAC
AGGGCATTCTATCCTAATTCTCACAATGAACACCCCTCCCCCCGCCCCAAATCCTGAGAGCAAG
CATTTGTGCCAGCCACAGGAAGCAGAAGTATTAAGGGAAGAGGTGCTGGCAGCTACCTTGCGGG
GAGACTCCAGTAGGAAAGTCACAGGCAATGACACCAGTCTTCATGACTTTCATTCTCATTTATA
AGTTGGACTTCGAGTCAGTAGAACATTTATGCTCAGAATCTTTCTTAAGACAGTTTCCAGTATT
TCTTTGATTGGAATTAATCCAGGCAAAAGAAGAGGCTTTATCAGAGAGCGGGAGTGAAGTATCG
TGGGTCCTGCCCGTATCCCATTTTCACAGTAACAAATTCACATGCAGGATTTACTTTATACTGT
AGAATACTGACTTTCATGATGACAACTTGATTTATGCATGAATATCAACAGTATTTCCATATAG
TAAAATAACATTTCTGCCCAGGATAATAGTCACAGTTTTCCAGGGAGGGAATGATATAATTTTC
ATGACAATGTCATGTGCTGATAGAATTTCTCCATTGATGAACCTCTAGTATGTGTGTATACTTT
ATTTACCCCTGTGTATATTTTATGATCATGATCTAAGCTGTTAATTCTTTCATTCATGTCCCCG
CTAAGACACTGATATTAGCAACTTAGAGTTGGTGAGTTTTATCTTCAGTCATACCAGTTCCACA
GAGATGAGGCCTCAGTCCAGAACCCATCTTCACAGAAAAGCAGCAGTAGCCTGCAGGTGGCTAT
GCTTGGAGCGACATTTGGCTGCCAGTAGCAGGCCTGGCATGGTGTGACGTGAGGGGCCTAATTA
CCTAGCTGTTGCTGGACACCAGCTGTGCATACCTGAGCATGCCCAGTGTATTGGGTTCATGCAC
AGTCCTGGACCCGAGCTTTCACAAGCTCTGTCCTCAAGGGAACTGTGTCCTTCTCCGTCCCATT
AAGATTTGGACACAGATAAGACATCTTCCACTTCATTCTTCCTGGTCATAAGCCAGTAAGGCAA
GAAGGCCCCCACGTGGCAGCATTCAGCTCTCATCCATGGAGCCCAGAGCGCAGCAGTGCTGGGC
TCTCCTTTTCAGCAGCCTCACAGCCTCCCCATCCTTCCAGGATGTCGACCGCCATGTCACCACT
CTGATGCCCAGCATTCTCGGGTTGCTGCATGAGTGTTGAGAACACTCCTAACCAACATTGCTGT
CTGCTGCCGTCTGGCAGTCCAGTGAGCCCTTTTCTGTCCGTTCCTAACAACTTTGATTGGACAC
ATTGAAAATTTTCTGACTGTCCTTAAGACAGCAGAGACGCCTCTGTTTTATTTGGGTTTTGTGA
CTGACTTTGCCTATGTATCTTCCTGGGGTTTTGTTTGTGTTTAATTTTTATTTTGCATACTGAG
GGTATTGGGGTGGGGTTGTTTTTTGAGATGTGTAATTCTTTCATGGAGTTTTTAAAAAGAATTT
TCATATTGTTTTTCTAACATGGCTTCATTAAACGTTTAAGTATTTTAAAACTATGTAATATTTG
GACCAGATGTTGTGAATAACAGTAGAGAAAAGCTATTTTATTCTGTATTTTTAAAACTGTTCCG
TACAAATAAAAGCTCTCCTGGATGTAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006235067 ⟹ XP_006235129

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	139,755,583 - 139,817,865 (-)	NCBI
mRatBN7.2	3	119,302,651 - 119,364,797 (-)	NCBI
Rnor_6.0	3	124,632,491 - 124,692,021 (-)	NCBI
Rnor_5.0	3	131,132,124 - 131,266,028 (-)	NCBI

Sequence:

show sequence

GCCATGGTGTCTCTTCACAGCAACAGAGCTTCTCAGGTGAGCAGCTCTGCTGGCGAGCCTCTCC
TGCCTCTCACGTGAGCTTAGTGTTCCCTCTGGTCTGGGAAATCTACTGTAAGAGAGATGGGGAC
AGATGCTTGAATGTCCCAGAAGTGGAGGTGCTCCCTGCCCCTTGCCCTTTGTTGGAATCAAGAC
TAGGAGGGGCAGTCTGGCTGGCTGCCTGTGCAGCCTTTCCTCCTCTGGGACTGTAGTTAGGCCC
TGTCTACCAGACCCCAGGGACTTGAGTTGTGTGGTTTGTTGTGAGAGCTCATTTGTGTTGACTT
TGGTTATTTTTTAATGACGGGCTCCTGCCTTGACATCACTGCAGTTCTTTGAGTTTTGCAATCT
GATGTCTTTGGGCTCCTGATTGGGGGTAGGGGGGCTGCCAGTGAGTAAAAGTAATCTCCCTTTT
CACTGAGCTGGCAGCAGCATGGGCAGACTTGCTCATCTGAACTGTTTGAAAAGATAGGTTTTAA
TTTCCCTTCTTTGTTTGGGTTTGAGAACTACAATCGCAGCAGCTGCTGGGATCCTATAATAGAA
CACCCAGATTGCTCTGAAGAAGCCTGCAAGACTGAGCTCAAGACCGGATAGAGGCCTGCAATAA
CTGCATGTGACCAGGCGGTGGCTGTTGTGTAACACAAATAGCATTTGATGAGGTGTGGTTAGTT
ATACAATTTTGGCCAGCTCGTGTGGGATATAAGAGCTGAAATTACTTCAGCACCTGAAAGCAGC
TCCTGCTGCACCTCAGGACACCCGGACTGCCCAGGTGTGGTGGGCTGCACTCTGACTCCAGGAC
GATTTTGTGGGTAGACTGAGATTCCACTGAAGGTGATAAGCGATGACAGTAATCTGCGTCTGAG
GATCCAGTGTTCCAGGTGCTAAAAGCTGCCTCTGGTCTTAGACCCCTGCCTTGCATACGCCTTC
CCTGCAAGCACTCCAGGCCACAGTTTGTAGGCTGCTCAGCCTGCCTTGATGATGGGTGTCGGCA
AGAACACATCAAAGTCGGTGGAGGTTGGGGGCTCCACAGAAGGCAAATATGAAGAGGAGGCCAA
GCGCCCCGATTTCTTTACTCTCCCGGTGGTGATCAATGGTGGGGCCACGTCCAGTGGAGAACAG
GACAATGAAGACACTGAGCTCATGGCCATCTACACCACAGAGAATGGCATTGCAGAGAAGAGCT
CTCTCGCAGAGACCCTGGACAGCACTGGGAGCCTGGATCCCCAGAGGTCAGATATGATCTACAC
TATAGAAGACGTTCCTCCCTGGTACTTATGCATATTCCTGGGGTTGCAGCACTACCTGACGTGT
TTCAGTGGCACAATCGCAGTGCCCTTTTTGCTGGCTGATGCCATGTGCGTGGGGGATGACCAGT
GGGCCACCAGCCAGCTCATCGGGACCATTTTCTTCTGCGTGGGAATCACTACATTGCTGCAGAC
AACATTTGGATGCAGGTTACCCCTGTTTCAGGCCAGTGCTTTTGCATTTTTGGCCCCTGCTCGA
GCCATCCTGTCTTTAGATAAATGGAAATGTAACACCACAGAGATCACAGTTGCCAACGGAACGG
CAGAGCTGTTGGAACACATCTGGCACCCCCGGATCCAAGAGATCCAGGGGGCTATAATCATGTC
CTCACTGATAGAAGTGGTCATTGGCCTCCTTGGCCTGCCTGGGGCTCTGCTGAGGTATATTGGA
CCCTTGACCATCACACCCACCGTGGCCCTCATTGGCCTCTCTGGTTTCCAGGCAGCAGGAGAGC
GAGCTGGGAAGCACTGGGGCATTGCCATGCTGACAATTTTCCTAGTGTTACTATTCTCACAATA
TGCCAGAAATGTTAAATTTCCTCTCCCAATCTACAAATCCAAGAAAGGATGGACGGCCTACAAG
TTACAACTTTTCAAAATGTTTCCTATAATCCTGGCTATCCTCGTGTCCTGGCTGCTGTGCTTCA
TCTTCACGGTGACTGACGTCTTCCCTTCCAACAGCACCGACTATGGCTACTATGCACGCACAGA
TGCCAGGAAGGGCGTACTTCTGGTAGCCCCATGGTTTAAGGTTCCATACCCATTTCAGTGGGGG
ATGCCCACCGTCTCTGCAGCTGGCGTCATTGGCATGCTCAGTGCTGTCGTAGCCAGTATCATTG
AGTCCATCGGCGACTACTATGCCTGCGCCAGGCTCTCCTGTGCCCCACCACCTCCTATACATGC
AATAAACAGGGGTATTTTTGTGGAGGGTCTTTCTTGTGTTCTCGATGGCGTATTTGGTACCGGG
AATGGCTCTACCTCCTCCAGTCCCAATATTGGAGTTTTGGGAATTACAAAGGTTGGCAGCCGCC
GAGTGATCCAGTATGGTGCAGCTCTCATGCTGGGCTTGGGCATGATTGGCAAGTTCAGCGCCCT
CTTCGCCTCCCTCCCAGACCCTGTACTCGGAGCCCTCTTCTGCACACTCTTTGGAATGATCACA
GCTGTTGGCCTCTCTAACCTGCAGTTCATTGACTTGAATTCTTCCCGGAACCTATTTGTGCTTG
GATTTTCCATCTTCTTTGGGCTTGTTCTTCCAAGTTACCTCAGACAAAACCCTCTGGTTACAGG
CATAACAGGCATTGATCAAGTTCTGAATGTCCTTCTCACCACTGCTATGTTCGTCGGAGGCTGT
GTGGCTTTTATTTTGGACAACACCATCCCAGGAACCCCAGAGGAAAGAGGAATCAAGAAATGGA
AGAAGGGTGTGAGCAAAGGAAACAAGTCTCTTGACGGCATGGAGTCCTATAATTTGCCATTTGG
CATGAACATTATTAAAAAATACAGATGCTTCAGCTACCTGCCTATCAGCCCAACCTTTGCAGGT
TACACATGGAAAGGCTTTGGGAAGAGTGAGAACAGGCGGAGTTCAGACAAAGACTCCCAGGCCA
CAGTATAGCCTTTGCTGTGTCCTGTGGCCTGGCCACAGTACGGCATGCATCTGTAGTTCCTTGC
TGAATAACAAGAAGATATATGTTTGTATATCTATCTACATGGCATCCTGTACCTCAGAGCTAAG
ACAGGTTGCATATCACTCTTCTGTTGTGGGTGGTGATTATGTCCAATATGGTGTCTCACTTGTG
TCCTTATTGATCCCTTACCCGTTTTGTGTCCATTGCTGGCCATGGTCACTGAACTTGAAATCAC
AGTCCTGCCATTGGAGTGGGCATTTGGAATCTATAGTGCTCCTGCCTTCAAGTGCTCTCTTTCT
TACAAGCTGCTTCGAGGTCTAGGGGTTTCTGCTTCTTAAACACTATGTCCCAGTCTTCCCATGT
GACCTCAGCCTGAACCCTGTGGAGACCTCCTCTGGCCAGGGGCCACTGGTGTCCTTACTTTGTT
GTGATTCTATTATCCTTGATAGCCCAGGAGCCTACTGACCTGACTGAGAATAATGACATGTCTG
TCCTGTGACCAGATATGAGTGTGCATAAGGTCCTGTATAGCTGTGACTGGGGGAGCTCTGGTTA
GGAGATTGACAGGGAGTAGAACGATCCTGAGTCAGTGGGATTCTCAACCATGCTCCCCCCTCGT
CACCCTGGACCCATCTGGGCCAGCACAGTTCATACTAGTCTCTTTCTGGCCGAGACACCCTATT
TGGCATTTTCACTGCTGGCTGGTGTGATGGGTGTTAGAGTGCCCACAGGTAGTCTGTGGGTGTC
TTGGCTCTGCTGCCCTGTATTTGCGTGTGTTTTATTCCTATTTAATGTTATTGACTATAGCGGA
TTTTTGAAATCAGTGTTTTCCGTGTGAACTTCCAACCTTGCATCCTGTTCCTTGGCCTGTACTC
TTTACTCCATTGAGAAAAGAACCAGCGTCTGTAAAAGCTGTGGGTGCCATCAGGGAAGCTTCTT
GTGTCGGCTGTTGAAAGCCAGTGACAGTTGTTGTGGGTGTGTTTTGTACTGCTCTATACCATGA
AAGTGTAAATACTGTAGTGTCTAATCTATTTATCACAACTGACTACTGGACCAGGGCCCAGAAA
CATGGGTCAAGTTACACGTGAATTTGTTTGGTGAAGAAGGGAAGCTGGGGCAGCGACAGCATCA
GCACGTGGGATGTGCCGTTGTCTAAGCCGCTCCTTCCTCCTGTTGCACGTCATTGCTGACAGAG
CTGACTTAATGACTGTGTGGGTTGTCAGGTCACATATCCACTGGATGTAGATTCTTACAGAGGG
AAGATTTGACCCCTTAGTCAAATAGCCTATGGGATTTGTTACAGATGATAGCAGAAAAGCAGCC
TTTGGGTGCCCTCTGTGAAAGAGTTCTAACTTGGAAAACAAACTCCCACAGACAAATGACTTGT
ACTGAATCTGGTTTTGGTTTCCAAGCCAAGGGCAAAGCTGAAGACATGAGAATGCCCTTGCTTC
TTGAGGTTGTACCTCTTAAGTGGCTGTGGACCTGGCTGAACTGTGGGTGGCAGTGGGCATCCCC
GTCACCCTTAGCAAGGTGTGGTTGGTTCTCAGTGCCTGTCCATGGTATGTGTTTCTGTGCCCAG
GATAGCTCAGTGTCCCCATGTTACCAGGTCTTTGTGTTTCTGCAGCCCTCACGACCCTTGAGAG
TTTTGGGTTGCAGTCACACCTCAGAGCCACTGCATTGTTTTGCCAAAATCTTACTCCAGATTAA
GTTCGGGACTTGGTTTCTAACTGTATTTAGTTTTGATGGTTTATATTCAGACAATTAGTGCTTT
GGAAGCACATTGTTGAGTAGCCTTTTGTCCCTCCTTCTTAGCAAGCCCATTTGGCTGACAGCTC
TCCTGCTCTGCGTTCACTCTGTGCCTCCATTTGCATTTTGCTTAGTTGACCCAGTTTCTCTGAC
AAGGTAGAAAACTGGCAAGCATCTCAGATCTGTAGTATTGTGGTGCTGTGGTGGGCAGGAGCAG
GAGTCCATCCAGAAGCGTGAGAACGAACGGGCTGTAATCCAGGCCGTGCCCTGCCACTTATGCT
GTACTGCCGAGTGCCACCCGAGGCTTCTATTGGCTGTAGTTTGCTCTGGGGCTTTCACAGTTGA
ATCCTGGAGCCTGGGCTCAGCAGGTATCTGTGTGGCCAAGGAAGTGCTATGCCAACATCTTCCA
TTAGAATCAGGGTTTCCCCTTCTTGCTTCATCAGAGCCAACTTTTGATATTCTTGGAAGGGGAC
AGGAGGTAGGAACAAAGAGAGAAGTAGCCTACGCGTGCACCCCCAGGGTGGGGTACTGTCCACA
GTGCCCTGGGTGACTAGTACCTTGTAACCACTGGTAAGGTTTGTCCTTGAAGCTTGTGGTCCTC
CCAACATATAGGGAATGTGTGTTTATGTACCAGATGGGAATTTTTAGGGGACATGGTGACTGTG
TGATCTCTTTGTCCAGTGTTGGCCCTCGGTACTAGAACTTGGAGTTGCTCTGTTTGGTTACCAG
TGGACTGTTTTTCAGATGTGAGCATCTTACAGGGCATTCTATCCTAATTCTCACAATGAACACC
CCTCCCCCCGCCCCAAATCCTGAGAGCAAGCATTTGTGCCAGCCACAGGAAGCAGAAGTATTAA
GGGAAGAGGTGCTGGCAGCTACCTTGCGGGGAGACTCCAGTAGGAAAGTCACAGGCAATGACAC
CAGTCTTCATGACTTTCATTCTCATTTATAAGTTGGACTTCGAGTCAGTAGAACATTTATGCTC
AGAATCTTTCTTAAGACAGTTTCCAGTATTTCTTTGATTGGAATTAATCCAGGCAAAAGAAGAG
GCTTTATCAGAGAGCGGGAGTGAAGTATCGTGGGTCCTGCCCGTATCCCATTTTCACAGTAACA
AATTCACATGCAGGATTTACTTTATACTGTAGAATACTGACTTTCATGATGACAACTTGATTTA
TGCATGAATATCAACAGTATTTCCATATAGTAAAATAACATTTCTGCCCAGGATAATAGTCACA
GTTTTCCAGGGAGGGAATGATATAATTTTCATGACAATGTCATGTGCTGATAGAATTTCTCCAT
TGATGAACCTCTAGTATGTGTGTATACTTTATTTACCCCTGTGTATATTTTATGATCATGATCT
AAGCTGTTAATTCTTTCATTCATGTCCCCGCTAAGACACTGATATTAGCAACTTAGAGTTGGTG
AGTTTTATCTTCAGTCATACCAGTTCCACAGAGATGAGGCCTCAGTCCAGAACCCATCTTCACA
GAAAAGCAGCAGTAGCCTGCAGGTGGCTATGCTTGGAGCGACATTTGGCTGCCAGTAGCAGGCC
TGGCATGGTGTGACGTGAGGGGCCTAATTACCTAGCTGTTGCTGGACACCAGCTGTGCATACCT
GAGCATGCCCAGTGTATTGGGTTCATGCACAGTCCTGGACCCGAGCTTTCACAAGCTCTGTCCT
CAAGGGAACTGTGTCCTTCTCCGTCCCATTAAGATTTGGACACAGATAAGACATCTTCCACTTC
ATTCTTCCTGGTCATAAGCCAGTAAGGCAAGAAGGCCCCCACGTGGCAGCATTCAGCTCTCATC
CATGGAGCCCAGAGCGCAGCAGTGCTGGGCTCTCCTTTTCAGCAGCCTCACAGCCTCCCCATCC
TTCCAGGATGTCGACCGCCATGTCACCACTCTGATGCCCAGCATTCTCGGGTTGCTGCATGAGT
GTTGAGAACACTCCTAACCAACATTGCTGTCTGCTGCCGTCTGGCAGTCCAGTGAGCCCTTTTC
TGTCCGTTCCTAACAACTTTGATTGGACACATTGAAAATTTTCTGACTGTCCTTAAGACAGCAG
AGACGCCTCTGTTTTATTTGGGTTTTGTGACTGACTTTGCCTATGTATCTTCCTGGGGTTTTGT
TTGTGTTTAATTTTTATTTTGCATACTGAGGGTATTGGGGTGGGGTTGTTTTTTGAGATGTGTA
ATTCTTTCATGGAGTTTTTAAAAAGAATTTTCATATTGTTTTTCTAACATGGCTTCATTAAACG
TTTAAGTATTTTAAAACTATGTAATATTTGGACCAGATGTTGTGAATAACAGTAGAGAAAAGCT
ATTTTATTCTGTATTTTTAAAACTGTTCCGTACAAATAAAAGCTCTCCTGGATGTA

hide sequence

RefSeq Acc Id:

XM_006235068 ⟹ XP_006235130

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	139,755,583 - 139,848,011 (-)	NCBI
mRatBN7.2	3	119,302,651 - 119,395,289 (-)	NCBI
Rnor_6.0	3	124,632,491 - 124,842,225 (-)	NCBI
Rnor_5.0	3	131,132,124 - 131,266,028 (-)	NCBI

Sequence:

show sequence

AGGCTCCCTGGATGCTGTACTGTGCACCTTGGAACTTCCCAGATAGCGAAGGACAAACCCACTG
TGTGGACATGGAATCAGCGGTGACATGGAATCACGGTGGGAAGGAACGCCATGATTAATTAGTG
CAGCCAATGACGAGAAAAATGTTGAGCTGTGAGGTCAGACGTGCTCGACCATTCTTTATGGCTC
TCCGGAGTTGCTTGGGGATGGTTTAGAAAAACAACCAAGACCGTGGTTTCAAGATGGAAGACAG
AAGAAAGAGCTAATTATTAGGGTTTTGTTTGTTTGTTTTGGTGGAGGTAAGGACAGTTTTCACA
GTACCTTACAAATTAGTATTTTAGACCACCGCCCGCAGCATCACCTAGAAACTTCCTGGAAACG
CAAATTCTGAAGCCATACTTCAAATACCCAGTTTCAGCACCTCTTGGGCTGGTATCCAGTCTTT
AATGGCCCTCTGGGCAAGACTGCCCAGCCTAAGAGCTATGGGTTAATCGGCACACAGCCTTTTG
ACTCAACTGCCTAAGCGCCCATCCAGCAGGCATCCCCTGGGGGGCACTTGAGAAATACAGAATC
GCAGGCTGCCCCCAAACCCGCTTTATCAAAACACACGCCCCAGAGATATCAAGCCTGGTATCTT
CTCCCGCGTCAGCATAAGCAAGGAGGATCTCTTTCCCAGCGAGTTCGGAAGCCGGCGTGGATAA
GCCGTGAAATTGCTTTAAAGCGCGTAACCCACTGGGCCGGGTGCACTGCACCCCACTCGCTGTC
ACCCCGCGGCTATCTCAGGACTCGGGGTCCTGCAGGGTAAAAAGGAGTCTCTGGAGAGGAGAGC
GGGCGAGCATCGAGCCTCCCAGGCGGGCCCCGGAGCAGGTGATAAGCGATGACAGTAATCTGCG
TCTGAGGATCCAGTGTTCCAGGTGCTAAAAGCTGCCTCTGGTCTTAGACCCCTGCCTTGCATAC
GCCTTCCCTGCAAGCACTCCAGGCCACAGTTTGTAGGCTGCTCAGCCTGCCTTGATGATGGGTG
TCGGCAAGAACACATCAAAGTCGGTGGAGGTTGGGGGCTCCACAGAAGGCAAATATGAAGAGGA
GGCCAAGCGCCCCGATTTCTTTACTCTCCCGGTGGTGATCAATGGTGGGGCCACGTCCAGTGGA
GAACAGGACAATGAAGACACTGAGCTCATGGCCATCTACACCACAGAGAATGGCATTGCAGAGA
AGAGCTCTCTCGCAGAGACCCTGGACAGCACTGGGAGCCTGGATCCCCAGAGGTCAGATATGAT
CTACACTATAGAAGACGTTCCTCCCTGGTACTTATGCATATTCCTGGGGTTGCAGCACTACCTG
ACGTGTTTCAGTGGCACAATCGCAGTGCCCTTTTTGCTGGCTGATGCCATGTGCGTGGGGGATG
ACCAGTGGGCCACCAGCCAGCTCATCGGGACCATTTTCTTCTGCGTGGGAATCACTACATTGCT
GCAGACAACATTTGGATGCAGGTTACCCCTGTTTCAGGCCAGTGCTTTTGCATTTTTGGCCCCT
GCTCGAGCCATCCTGTCTTTAGATAAATGGAAATGTAACACCACAGAGATCACAGTTGCCAACG
GAACGGCAGAGCTGTTGGAACACATCTGGCACCCCCGGATCCAAGAGATCCAGGGGGCTATAAT
CATGTCCTCACTGATAGAAGTGGTCATTGGCCTCCTTGGCCTGCCTGGGGCTCTGCTGAGGTAT
ATTGGACCCTTGACCATCACACCCACCGTGGCCCTCATTGGCCTCTCTGGTTTCCAGGCAGCAG
GAGAGCGAGCTGGGAAGCACTGGGGCATTGCCATGCTGACAATTTTCCTAGTGTTACTATTCTC
ACAATATGCCAGAAATGTTAAATTTCCTCTCCCAATCTACAAATCCAAGAAAGGATGGACGGCC
TACAAGTTACAACTTTTCAAAATGTTTCCTATAATCCTGGCTATCCTCGTGTCCTGGCTGCTGT
GCTTCATCTTCACGGTGACTGACGTCTTCCCTTCCAACAGCACCGACTATGGCTACTATGCACG
CACAGATGCCAGGAAGGGCGTACTTCTGGTAGCCCCATGGTTTAAGGTTCCATACCCATTTCAG
TGGGGGATGCCCACCGTCTCTGCAGCTGGCGTCATTGGCATGCTCAGTGCTGTCGTAGCCAGTA
TCATTGAGTCCATCGGCGACTACTATGCCTGCGCCAGGCTCTCCTGTGCCCCACCACCTCCTAT
ACATGCAATAAACAGGGGTATTTTTGTGGAGGGTCTTTCTTGTGTTCTCGATGGCGTATTTGGT
ACCGGGAATGGCTCTACCTCCTCCAGTCCCAATATTGGAGTTTTGGGAATTACAAAGGTTGGCA
GCCGCCGAGTGATCCAGTATGGTGCAGCTCTCATGCTGGGCTTGGGCATGATTGGCAAGTTCAG
CGCCCTCTTCGCCTCCCTCCCAGACCCTGTACTCGGAGCCCTCTTCTGCACACTCTTTGGAATG
ATCACAGCTGTTGGCCTCTCTAACCTGCAGTTCATTGACTTGAATTCTTCCCGGAACCTATTTG
TGCTTGGATTTTCCATCTTCTTTGGGCTTGTTCTTCCAAGTTACCTCAGACAAAACCCTCTGGT
TACAGGCATAACAGGCATTGATCAAGTTCTGAATGTCCTTCTCACCACTGCTATGTTCGTCGGA
GGCTGTGTGGCTTTTATTTTGGACAACACCATCCCAGGAACCCCAGAGGAAAGAGGAATCAAGA
AATGGAAGAAGGGTGTGAGCAAAGGAAACAAGTCTCTTGACGGCATGGAGTCCTATAATTTGCC
ATTTGGCATGAACATTATTAAAAAATACAGATGCTTCAGCTACCTGCCTATCAGCCCAACCTTT
GCAGGTTACACATGGAAAGGCTTTGGGAAGAGTGAGAACAGGCGGAGTTCAGACAAAGACTCCC
AGGCCACAGTATAGCCTTTGCTGTGTCCTGTGGCCTGGCCACAGTACGGCATGCATCTGTAGTT
CCTTGCTGAATAACAAGAAGATATATGTTTGTATATCTATCTACATGGCATCCTGTACCTCAGA
GCTAAGACAGGTTGCATATCACTCTTCTGTTGTGGGTGGTGATTATGTCCAATATGGTGTCTCA
CTTGTGTCCTTATTGATCCCTTACCCGTTTTGTGTCCATTGCTGGCCATGGTCACTGAACTTGA
AATCACAGTCCTGCCATTGGAGTGGGCATTTGGAATCTATAGTGCTCCTGCCTTCAAGTGCTCT
CTTTCTTACAAGCTGCTTCGAGGTCTAGGGGTTTCTGCTTCTTAAACACTATGTCCCAGTCTTC
CCATGTGACCTCAGCCTGAACCCTGTGGAGACCTCCTCTGGCCAGGGGCCACTGGTGTCCTTAC
TTTGTTGTGATTCTATTATCCTTGATAGCCCAGGAGCCTACTGACCTGACTGAGAATAATGACA
TGTCTGTCCTGTGACCAGATATGAGTGTGCATAAGGTCCTGTATAGCTGTGACTGGGGGAGCTC
TGGTTAGGAGATTGACAGGGAGTAGAACGATCCTGAGTCAGTGGGATTCTCAACCATGCTCCCC
CCTCGTCACCCTGGACCCATCTGGGCCAGCACAGTTCATACTAGTCTCTTTCTGGCCGAGACAC
CCTATTTGGCATTTTCACTGCTGGCTGGTGTGATGGGTGTTAGAGTGCCCACAGGTAGTCTGTG
GGTGTCTTGGCTCTGCTGCCCTGTATTTGCGTGTGTTTTATTCCTATTTAATGTTATTGACTAT
AGCGGATTTTTGAAATCAGTGTTTTCCGTGTGAACTTCCAACCTTGCATCCTGTTCCTTGGCCT
GTACTCTTTACTCCATTGAGAAAAGAACCAGCGTCTGTAAAAGCTGTGGGTGCCATCAGGGAAG
CTTCTTGTGTCGGCTGTTGAAAGCCAGTGACAGTTGTTGTGGGTGTGTTTTGTACTGCTCTATA
CCATGAAAGTGTAAATACTGTAGTGTCTAATCTATTTATCACAACTGACTACTGGACCAGGGCC
CAGAAACATGGGTCAAGTTACACGTGAATTTGTTTGGTGAAGAAGGGAAGCTGGGGCAGCGACA
GCATCAGCACGTGGGATGTGCCGTTGTCTAAGCCGCTCCTTCCTCCTGTTGCACGTCATTGCTG
ACAGAGCTGACTTAATGACTGTGTGGGTTGTCAGGTCACATATCCACTGGATGTAGATTCTTAC
AGAGGGAAGATTTGACCCCTTAGTCAAATAGCCTATGGGATTTGTTACAGATGATAGCAGAAAA
GCAGCCTTTGGGTGCCCTCTGTGAAAGAGTTCTAACTTGGAAAACAAACTCCCACAGACAAATG
ACTTGTACTGAATCTGGTTTTGGTTTCCAAGCCAAGGGCAAAGCTGAAGACATGAGAATGCCCT
TGCTTCTTGAGGTTGTACCTCTTAAGTGGCTGTGGACCTGGCTGAACTGTGGGTGGCAGTGGGC
ATCCCCGTCACCCTTAGCAAGGTGTGGTTGGTTCTCAGTGCCTGTCCATGGTATGTGTTTCTGT
GCCCAGGATAGCTCAGTGTCCCCATGTTACCAGGTCTTTGTGTTTCTGCAGCCCTCACGACCCT
TGAGAGTTTTGGGTTGCAGTCACACCTCAGAGCCACTGCATTGTTTTGCCAAAATCTTACTCCA
GATTAAGTTCGGGACTTGGTTTCTAACTGTATTTAGTTTTGATGGTTTATATTCAGACAATTAG
TGCTTTGGAAGCACATTGTTGAGTAGCCTTTTGTCCCTCCTTCTTAGCAAGCCCATTTGGCTGA
CAGCTCTCCTGCTCTGCGTTCACTCTGTGCCTCCATTTGCATTTTGCTTAGTTGACCCAGTTTC
TCTGACAAGGTAGAAAACTGGCAAGCATCTCAGATCTGTAGTATTGTGGTGCTGTGGTGGGCAG
GAGCAGGAGTCCATCCAGAAGCGTGAGAACGAACGGGCTGTAATCCAGGCCGTGCCCTGCCACT
TATGCTGTACTGCCGAGTGCCACCCGAGGCTTCTATTGGCTGTAGTTTGCTCTGGGGCTTTCAC
AGTTGAATCCTGGAGCCTGGGCTCAGCAGGTATCTGTGTGGCCAAGGAAGTGCTATGCCAACAT
CTTCCATTAGAATCAGGGTTTCCCCTTCTTGCTTCATCAGAGCCAACTTTTGATATTCTTGGAA
GGGGACAGGAGGTAGGAACAAAGAGAGAAGTAGCCTACGCGTGCACCCCCAGGGTGGGGTACTG
TCCACAGTGCCCTGGGTGACTAGTACCTTGTAACCACTGGTAAGGTTTGTCCTTGAAGCTTGTG
GTCCTCCCAACATATAGGGAATGTGTGTTTATGTACCAGATGGGAATTTTTAGGGGACATGGTG
ACTGTGTGATCTCTTTGTCCAGTGTTGGCCCTCGGTACTAGAACTTGGAGTTGCTCTGTTTGGT
TACCAGTGGACTGTTTTTCAGATGTGAGCATCTTACAGGGCATTCTATCCTAATTCTCACAATG
AACACCCCTCCCCCCGCCCCAAATCCTGAGAGCAAGCATTTGTGCCAGCCACAGGAAGCAGAAG
TATTAAGGGAAGAGGTGCTGGCAGCTACCTTGCGGGGAGACTCCAGTAGGAAAGTCACAGGCAA
TGACACCAGTCTTCATGACTTTCATTCTCATTTATAAGTTGGACTTCGAGTCAGTAGAACATTT
ATGCTCAGAATCTTTCTTAAGACAGTTTCCAGTATTTCTTTGATTGGAATTAATCCAGGCAAAA
GAAGAGGCTTTATCAGAGAGCGGGAGTGAAGTATCGTGGGTCCTGCCCGTATCCCATTTTCACA
GTAACAAATTCACATGCAGGATTTACTTTATACTGTAGAATACTGACTTTCATGATGACAACTT
GATTTATGCATGAATATCAACAGTATTTCCATATAGTAAAATAACATTTCTGCCCAGGATAATA
GTCACAGTTTTCCAGGGAGGGAATGATATAATTTTCATGACAATGTCATGTGCTGATAGAATTT
CTCCATTGATGAACCTCTAGTATGTGTGTATACTTTATTTACCCCTGTGTATATTTTATGATCA
TGATCTAAGCTGTTAATTCTTTCATTCATGTCCCCGCTAAGACACTGATATTAGCAACTTAGAG
TTGGTGAGTTTTATCTTCAGTCATACCAGTTCCACAGAGATGAGGCCTCAGTCCAGAACCCATC
TTCACAGAAAAGCAGCAGTAGCCTGCAGGTGGCTATGCTTGGAGCGACATTTGGCTGCCAGTAG
CAGGCCTGGCATGGTGTGACGTGAGGGGCCTAATTACCTAGCTGTTGCTGGACACCAGCTGTGC
ATACCTGAGCATGCCCAGTGTATTGGGTTCATGCACAGTCCTGGACCCGAGCTTTCACAAGCTC
TGTCCTCAAGGGAACTGTGTCCTTCTCCGTCCCATTAAGATTTGGACACAGATAAGACATCTTC
CACTTCATTCTTCCTGGTCATAAGCCAGTAAGGCAAGAAGGCCCCCACGTGGCAGCATTCAGCT
CTCATCCATGGAGCCCAGAGCGCAGCAGTGCTGGGCTCTCCTTTTCAGCAGCCTCACAGCCTCC
CCATCCTTCCAGGATGTCGACCGCCATGTCACCACTCTGATGCCCAGCATTCTCGGGTTGCTGC
ATGAGTGTTGAGAACACTCCTAACCAACATTGCTGTCTGCTGCCGTCTGGCAGTCCAGTGAGCC
CTTTTCTGTCCGTTCCTAACAACTTTGATTGGACACATTGAAAATTTTCTGACTGTCCTTAAGA
CAGCAGAGACGCCTCTGTTTTATTTGGGTTTTGTGACTGACTTTGCCTATGTATCTTCCTGGGG
TTTTGTTTGTGTTTAATTTTTATTTTGCATACTGAGGGTATTGGGGTGGGGTTGTTTTTTGAGA
TGTGTAATTCTTTCATGGAGTTTTTAAAAAGAATTTTCATATTGTTTTTCTAACATGGCTTCAT
TAAACGTTTAAGTATTTTAAAACTATGTAATATTTGGACCAGATGTTGTGAATAACAGTAGAGA
AAAGCTATTTTATTCTGTATTTTTAAAACTGTTCCGTACAAATAAAAGCTCTCCTGGATGTA

hide sequence

RefSeq Acc Id:

XM_039105735 ⟹ XP_038961663

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	139,755,583 - 139,847,177 (-)	NCBI
mRatBN7.2	3	119,302,651 - 119,394,282 (-)	NCBI

RefSeq Acc Id:

XM_039105736 ⟹ XP_038961664

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	139,777,785 - 139,847,416 (-)	NCBI
mRatBN7.2	3	119,324,854 - 119,394,486 (-)	NCBI

RefSeq Acc Id:

XM_063284409 ⟹ XP_063140479

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	139,755,583 - 139,913,304 (-)	NCBI

RefSeq Acc Id:

XM_063284411 ⟹ XP_063140481

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	139,755,583 - 139,791,557 (-)	NCBI

RefSeq Acc Id:

XM_063284412 ⟹ XP_063140482

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	139,755,583 - 139,785,533 (-)	NCBI

RefSeq Acc Id:

XM_063284413 ⟹ XP_063140483

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	139,777,793 - 139,847,415 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_059012	(Get FASTA)	NCBI Sequence Viewer
	XP_006235129	(Get FASTA)	NCBI Sequence Viewer
	XP_006235130	(Get FASTA)	NCBI Sequence Viewer
	XP_038961663	(Get FASTA)	NCBI Sequence Viewer
	XP_038961664	(Get FASTA)	NCBI Sequence Viewer
	XP_063140479	(Get FASTA)	NCBI Sequence Viewer
	XP_063140481	(Get FASTA)	NCBI Sequence Viewer
	XP_063140482	(Get FASTA)	NCBI Sequence Viewer
	XP_063140483	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD30368	(Get FASTA)	NCBI Sequence Viewer
	EDL80255	(Get FASTA)	NCBI Sequence Viewer
	EDL80256	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000028885.2
	ENSRNOP00000098618
GenBank Protein	Q9WTW8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_059012 ⟸ NM_017316

- UniProtKB:

Q9WTW8 (UniProtKB/Swiss-Prot), A6HQF4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMGVGKNTSKSVEVGGSTEGKYEEEAKRPDFFTLPVVINGGATSSGEQDNEDTELMAIYTTENG
IAEKSSLAETLDSTGSLDPQRSDMIYTIEDVPPWYLCIFLGLQHYLTCFSGTIAVPFLLADAMC
VGDDQWATSQLIGTIFFCVGITTLLQTTFGCRLPLFQASAFAFLAPARAILSLDKWKCNTTEIT
VANGTAELLEHIWHPRIQEIQGAIIMSSLIEVVIGLLGLPGALLRYIGPLTITPTVALIGLSGF
QAAGERAGKHWGIAMLTIFLVLLFSQYARNVKFPLPIYKSKKGWTAYKLQLFKMFPIILAILVS
WLLCFIFTVTDVFPSNSTDYGYYARTDARKGVLLVAPWFKVPYPFQWGMPTVSAAGVIGMLSAV
VASIIESIGDYYACARLSCAPPPPIHAINRGIFVEGLSCVLDGVFGTGNGSTSSSPNIGVLGIT
KVGSRRVIQYGAALMLGLGMIGKFSALFASLPDPVLGALFCTLFGMITAVGLSNLQFIDLNSSR
NLFVLGFSIFFGLVLPSYLRQNPLVTGITGIDQVLNVLLTTAMFVGGCVAFILDNTIPGTPEER
GIKKWKKGVSKGNKSLDGMESYNLPFGMNIIKKYRCFSYLPISPTFAGYTWKGFGKSENRRSSD
KDSQATV

hide sequence

RefSeq Acc Id:	XP_006235130 ⟸ XM_006235068
- Peptide Label:	isoform X1
- UniProtKB:	Q9WTW8 (UniProtKB/Swiss-Prot), A6HQF4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMGVGKNTSKSVEVGGSTEGKYEEEAKRPDFFTLPVVINGGATSSGEQDNEDTELMAIYTTENG IAEKSSLAETLDSTGSLDPQRSDMIYTIEDVPPWYLCIFLGLQHYLTCFSGTIAVPFLLADAMC VGDDQWATSQLIGTIFFCVGITTLLQTTFGCRLPLFQASAFAFLAPARAILSLDKWKCNTTEIT VANGTAELLEHIWHPRIQEIQGAIIMSSLIEVVIGLLGLPGALLRYIGPLTITPTVALIGLSGF QAAGERAGKHWGIAMLTIFLVLLFSQYARNVKFPLPIYKSKKGWTAYKLQLFKMFPIILAILVS WLLCFIFTVTDVFPSNSTDYGYYARTDARKGVLLVAPWFKVPYPFQWGMPTVSAAGVIGMLSAV VASIIESIGDYYACARLSCAPPPPIHAINRGIFVEGLSCVLDGVFGTGNGSTSSSPNIGVLGIT KVGSRRVIQYGAALMLGLGMIGKFSALFASLPDPVLGALFCTLFGMITAVGLSNLQFIDLNSSR NLFVLGFSIFFGLVLPSYLRQNPLVTGITGIDQVLNVLLTTAMFVGGCVAFILDNTIPGTPEER GIKKWKKGVSKGNKSLDGMESYNLPFGMNIIKKYRCFSYLPISPTFAGYTWKGFGKSENRRSSD KDSQATV hide sequence

RefSeq Acc Id:	XP_006235129 ⟸ XM_006235067
- Peptide Label:	isoform X1
- UniProtKB:	Q9WTW8 (UniProtKB/Swiss-Prot), A6HQF4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMGVGKNTSKSVEVGGSTEGKYEEEAKRPDFFTLPVVINGGATSSGEQDNEDTELMAIYTTENG IAEKSSLAETLDSTGSLDPQRSDMIYTIEDVPPWYLCIFLGLQHYLTCFSGTIAVPFLLADAMC VGDDQWATSQLIGTIFFCVGITTLLQTTFGCRLPLFQASAFAFLAPARAILSLDKWKCNTTEIT VANGTAELLEHIWHPRIQEIQGAIIMSSLIEVVIGLLGLPGALLRYIGPLTITPTVALIGLSGF QAAGERAGKHWGIAMLTIFLVLLFSQYARNVKFPLPIYKSKKGWTAYKLQLFKMFPIILAILVS WLLCFIFTVTDVFPSNSTDYGYYARTDARKGVLLVAPWFKVPYPFQWGMPTVSAAGVIGMLSAV VASIIESIGDYYACARLSCAPPPPIHAINRGIFVEGLSCVLDGVFGTGNGSTSSSPNIGVLGIT KVGSRRVIQYGAALMLGLGMIGKFSALFASLPDPVLGALFCTLFGMITAVGLSNLQFIDLNSSR NLFVLGFSIFFGLVLPSYLRQNPLVTGITGIDQVLNVLLTTAMFVGGCVAFILDNTIPGTPEER GIKKWKKGVSKGNKSLDGMESYNLPFGMNIIKKYRCFSYLPISPTFAGYTWKGFGKSENRRSSD KDSQATV hide sequence

Ensembl Acc Id:

ENSRNOP00000028885 ⟸ ENSRNOT00000028885

RefSeq Acc Id:	XP_038961663 ⟸ XM_039105735
- Peptide Label:	isoform X1
- UniProtKB:	Q9WTW8 (UniProtKB/Swiss-Prot), A6HQF4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961664 ⟸ XM_039105736
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063140479 ⟸ XM_063284409
- Peptide Label:	isoform X1
- UniProtKB:	Q9WTW8 (UniProtKB/Swiss-Prot), A6HQF4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140481 ⟸ XM_063284411
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063140482 ⟸ XM_063284412
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063140483 ⟸ XM_063284413
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000098618 ⟸ ENSRNOT00000121077

Ensembl Acc Id:

ENSRNOP00000098620 ⟸ ENSRNOT00000121079

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9WTW8-F1-model_v2	AlphaFold	Q9WTW8	1-647	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:619876	AgrOrtholog
BioCyc Gene	G2FUF-47786	BioCyc
Ensembl Genes	ENSRNOG00000021262	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000028885.5	UniProtKB/Swiss-Prot
	ENSRNOT00000121077	ENTREZGENE
InterPro	Xan_ur_permease	UniProtKB/Swiss-Prot
	Xant/urac/vitC	UniProtKB/Swiss-Prot
KEGG Report	rno:50622	UniProtKB/Swiss-Prot
NCBI Gene	50622	ENTREZGENE
PANTHER	XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER	UniProtKB/Swiss-Prot
Pfam	Xan_ur_permease	UniProtKB/Swiss-Prot
PhenoGen	Slc23a2	PhenoGen
PROSITE	XANTH_URACIL_PERMASE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000021262	RatGTEx
UniProt	A6HQF4	ENTREZGENE, UniProtKB/TrEMBL
	A6HQF5_RAT	UniProtKB/TrEMBL
	Q9WTW8	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-09	Slc23a2	solute carrier family 23 member 2	Slc23a2	solute carrier family 23 (ascorbic acid transporter), member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-02	Slc23a2	solute carrier family 23 (ascorbic acid transporter), member 2	Slc23a2	solute carrier family 23 (nucleobase transporters), member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-04-22	Slc23a2	solute carrier family 23 (nucleobase transporters), member 2	SVCT2	sodium-coupled ascorbic acid transporter 2	Symbol and Name updated to reflect Human and Mouse nomenclature	625702	APPROVED
2002-08-07	SVCT2	sodium-coupled ascorbic acid transporter 2			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in the brain, eye and other organs	634186
gene_process	regulates the supply and metabolism of vitamin C	634186

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD