Ahnak (AHNAK nucleoprotein) - Rat Genome Database

Name: Ahnak
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Ahnak (AHNAK nucleoprotein) Rattus norvegicus

Analyze

Symbol:

Ahnak

Name:

AHNAK nucleoprotein

RGD ID:

619779

Description:

Predicted to enable S100 protein binding activity; identical protein binding activity; and structural molecule activity conferring elasticity. Predicted to be involved in regulation of RNA splicing. Predicted to be located in several cellular components, including costamere; extracellular exosome; and sarcolemma. Predicted to be part of plasma membrane protein complex. Predicted to colocalize with membrane raft. Used to study autoimmune disease. Orthologous to human AHNAK (AHNAK nucleoprotein); INTERACTS WITH 1,2-dimethylhydrazine; 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

AHNAK 1; AHNAK nucleoprotein (desmoyokin); desmoyokin; neuroblast differentiation-associated protein AHNAK; RGD1308572; UV118

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AHNAK (AHNAK nucleoprotein)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Ahnak (AHNAK nucleoprotein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ahnak (AHNAK nucleoprotein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	AHNAK (AHNAK nucleoprotein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	AHNAK (AHNAK nucleoprotein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ahnak (AHNAK nucleoprotein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	AHNAK (AHNAK nucleoprotein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	AHNAK (AHNAK nucleoprotein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ahnak (AHNAK nucleoprotein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RAPGEFL1 (Rap guanine nucleotide exchange factor like 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	AHNAK (AHNAK nucleoprotein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ahnak (AHNAK nucleoprotein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ahnak (AHNAK nucleoprotein)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	205,882,225 - 205,970,934 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	205,882,273 - 205,970,926 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	214,290,841 - 214,357,380 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	221,325,592 - 221,393,197 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	214,018,448 - 214,065,857 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	225,184,883 - 225,429,638 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	225,184,939 - 225,215,015 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	232,122,559 - 232,152,286 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	211,662,523 - 211,692,558 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	211,841,124 - 211,841,424 (+)	NCBI
Celera	1	203,395,054 - 203,423,580 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autoimmune disease (IDA)

Chloracne (ISO)

COVID-19 (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

Hirschsprung's disease (ISO)

intellectual disability (ISO)

leukocyte adhesion deficiency 3 (ISO)

megacolon (ISO)

Neoplasm Invasiveness (ISO)

renal cell carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (EXP,ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-hydroxypropanoic acid (ISO)

2-methoxyethanol (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amiodarone (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

Brodifacoum (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

choline (ISO)

chrysene (ISO)

cisplatin (EXP,ISO)

clobetasol (ISO)

cobalt dichloride (EXP)

copper(II) sulfate (ISO)

coumarin (ISO)

CU-O LINKAGE (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

cytarabine (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

dibenzo[a,l]pyrene (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

fenamidone (ISO)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP,ISO)

genistein (EXP)

hexadecanoic acid (ISO)

hydroquinone O-beta-D-glucopyranoside (ISO)

indole-3-methanol (EXP)

indometacin (ISO)

ivermectin (ISO)

jaspamide (ISO)

kojic acid (ISO)

L-methionine (ISO)

lead diacetate (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

methamphetamine (ISO)

methapyrilene (ISO)

methylparaben (ISO)

N-methyl-4-phenylpyridinium (EXP)

N-nitrosodiethylamine (EXP)

N-nitrosodimethylamine (EXP)

ozone (ISO)

panobinostat (ISO)

paracetamol (ISO)

paraquat (ISO)

perfluorooctanoic acid (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

raloxifene (ISO)

resveratrol (ISO)

rotenone (EXP)

SB 431542 (ISO)

silicon dioxide (ISO)

succimer (ISO)

tamibarotene (ISO)

tamoxifen (ISO)

temozolomide (ISO)

testosterone (ISO)

tetraphene (ISO)

thapsigargin (ISO)

titanium dioxide (ISO)

toluene (EXP)

tributylstannane (EXP)

trichloroethene (ISO)

trichostatin A (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

vancomycin (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of RNA splicing (IBA,ISO,ISS)

Cellular Component

actin cytoskeleton (ISO,ISS)

cell-cell contact zone (ISO,ISS)

costamere (IBA,ISO,ISS)

cytoplasm (IBA,ISO,NAS)

cytosol (ISO,ISS)

extracellular exosome (ISO)

membrane raft (ISO,ISS)

nucleus (IBA,ISO,ISS)

plasma membrane (ISO,ISS)

plasma membrane protein complex (ISO)

sarcolemma (ISO)

vesicle (ISO,ISS)

Molecular Function

identical protein binding (ISO)

protein binding (ISO)

S100 protein binding (ISO)

structural molecule activity conferring elasticity (ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Calcium current in rat cardiomyocytes is modulated by the carboxyl-terminal ahnak domain.	Alvarez J, etal., J Biol Chem 2004 Mar 26;279(13):12456-61. Epub 2004 Jan 12.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	The carboxyl-terminal ahnak domain induces actin bundling and stabilizes muscle contraction.	Haase H, etal., FASEB J 2004 May;18(7):839-41. Epub 2004 Mar 04.
5.	AHNAK, a novel component of the dysferlin protein complex, redistributes to the cytoplasm with dysferlin during skeletal muscle regeneration.	Huang Y, etal., FASEB J. 2007 Mar;21(3):732-42. Epub 2006 Dec 21.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Identification of AHNAK as a novel autoantigen in systemic lupus erythematosus.	Skoldberg F, etal., Biochem Biophys Res Commun 2002 Mar 8;291(4):951-8.

Additional References at PubMed

PMID:12447386	PMID:14699089	PMID:15632090	PMID:16319140	PMID:16930430	PMID:17897319	PMID:18837049	PMID:19056867	PMID:19199708	PMID:19946888	PMID:20833135	PMID:21423176
PMID:21940993	PMID:22038483	PMID:22057634	PMID:22658674	PMID:25468996

Genomics

Comparative Map Data

Ahnak
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	205,882,225 - 205,970,934 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	205,882,273 - 205,970,926 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	214,290,841 - 214,357,380 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	221,325,592 - 221,393,197 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	214,018,448 - 214,065,857 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	225,184,883 - 225,429,638 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	225,184,939 - 225,215,015 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	232,122,559 - 232,152,286 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	211,662,523 - 211,692,558 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	211,841,124 - 211,841,424 (+)	NCBI
Celera	1	203,395,054 - 203,423,580 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

AHNAK
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	62,433,544 - 62,546,806 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	62,433,542 - 62,556,235 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	62,201,016 - 62,314,278 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	61,957,592 - 62,070,908 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	62,040,583 - 62,050,282	NCBI
Celera	11	59,530,422 - 59,643,724 (-)	NCBI		Celera
Cytogenetic Map	11	q12.3	NCBI
HuRef	11	58,529,120 - 58,643,196 (-)	NCBI		HuRef
CHM1_1	11	62,084,072 - 62,197,372 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	62,422,994 - 62,537,374 (-)	NCBI		T2T-CHM13v2.0

Ahnak
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	8,966,640 - 9,054,299 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	8,966,648 - 9,054,278 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	8,989,284 - 9,076,935 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	8,989,284 - 9,076,914 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	9,063,774 - 9,151,409 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	9,056,329 - 9,143,964 (+)	NCBI		MGSCv36	mm8
Celera	19	8,749,907 - 8,837,406 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	6.04	NCBI

Ahnak
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955599	629,271 - 656,564 (+)	NCBI	ChiLan1.0	ChiLan1.0

AHNAK
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	11	64,785,726 - 64,816,687 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	57,791,927 - 57,904,277 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	61,149,485 - 61,259,175 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	61,149,485 - 61,249,137 (-)	Ensembl	panpan1.1		panPan2

AHNAK
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	54,085,186 - 54,116,011 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	54,100,942 - 54,113,424 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	52,690,025 - 52,721,586 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	55,136,824 - 55,169,332 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	55,148,346 - 55,232,170 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	54,234,768 - 54,266,243 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	53,807,218 - 53,839,721 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	54,603,726 - 54,636,260 (+)	NCBI		UU_Cfam_GSD_1.0

Ahnak
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	10,588,763 - 10,678,979 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936581	702,579 - 792,762 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AHNAK
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	2	9,186,984 - 9,216,450 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	8,528,073 - 8,544,759 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AHNAK
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	11,352,848 - 11,384,944 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666038	108,691,523 - 108,724,002 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ahnak
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624926	1,071,969 - 1,101,587 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ahnak
362 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	94
Count of miRNA genes:	71
Interacting mature miRNAs:	84
Transcripts:	ENSRNOT00000072185
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94642644	214537671	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	102813953	218753816	Rat
7794788	Mcs32	Mammary carcinoma susceptibility QTL 32	2.61		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	1	115540693	238914717	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118608292	241799120	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	143506580	212458660	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	144267353	222987745	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	144267353	251128347	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	149448574	221264292	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	150700142	252085212	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	150700247	252085048	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	150700247	252085048	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	256448636	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	151162766	225824951	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	153136852	260522016	Rat
2312420	Pur17	Proteinuria QTL 17	7.1	0.0001	urine protein amount (VT:0005160)	urine total protein excretion rate (CMO:0000756)	1	156677124	218753816	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	156677124	256448636	Rat
2292222	Bp307	Blood pressure QTL 307	3.06	0.0014	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164310393	213533942	Rat
2292220	Bp306	Blood pressure QTL 306	3.47	0.00087	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164310393	243914901	Rat
619613	Bp77	Blood pressure QTL 77		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164747424	209747424	Rat
619613	Bp77	Blood pressure QTL 77		0.01	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	164747424	209747424	Rat
1354653	Despr9	Despair related QTL 9		0.00019	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	167909849	212909849	Rat
61341	Bp26	Blood pressure QTL 26			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	169537671	214537671	Rat
724562	Rends1	Renal damage susceptibility QTL 1		0.05	kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	1	169537671	214537671	Rat
1358294	Bw37	Body weight QTL 37	5	0.000011	body mass (VT:0001259)	body weight (CMO:0000012)	1	171310381	216310381	Rat
2293689	Bss47	Bone structure and strength QTL 47	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	1	171629477	216629477	Rat
2293693	Bss22	Bone structure and strength QTL 22	33.52	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	1	171629477	216629477	Rat
2300161	Bmd43	Bone mineral density QTL 43	8.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	171629477	216629477	Rat
2300174	Bmd42	Bone mineral density QTL 42	8.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	bone mineral density (CMO:0001226)	1	171629477	216629477	Rat
2300187	Bmd41	Bone mineral density QTL 41	8.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	171629477	216629477	Rat
2293654	Bss30	Bone structure and strength QTL 30	32.65	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	1	171629477	216629477	Rat
2293673	Bss27	Bone structure and strength QTL 27	18.63	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	1	171629477	216629477	Rat
2293677	Bss41	Bone structure and strength QTL 41	9.38	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	1	171629477	216629477	Rat
1549830	Bss1	Bone structure and strength QTL 1	4.8		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	172609619	217609619	Rat
631214	Bw61	Body weight QTL61	3.4	0.0001	intramuscular adipose amount (VT:0010044)	intramuscular fat area (CMO:0001162)	1	173108781	218108781	Rat
70163	Bw20	Body weight QTL 20	5.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	174133260	219133260	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	176426412	257976495	Rat
1600380	Niddm70	Non-insulin dependent diabetes mellitus QTL 70	3.1	0.0008	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	176550523	221550523	Rat
10059600	Bp378	Blood pressure QTL 378	3.08	0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	176869060	221869060	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	177227632	256448636	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	177227632	256448636	Rat
1558658	Bw59	Body weight QTL 59	3.5	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	1	178784622	223784622	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	178810256	240830002	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	179567751	260522016	Rat
1302787	Stl25	Serum triglyceride level QTL 25	2.7	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	180359209	210702199	Rat
6903303	Scl34	Serum cholesterol QTL 34	2.5	0.0033	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	180359209	218108781	Rat
737977	Bp160	Blood pressure QTL 160		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	181133855	226133855	Rat
724559	Pancm1	Pancreatic morphology QTL 1	7.1		islet of Langerhans morphology trait (VT:0005215)	pancreatic islet damage composite score (CMO:0001156)	1	181759564	214537555	Rat
2293083	Iddm25	Insulin dependent diabetes mellitus QTL 25	4.18		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	181829673	224569684	Rat
634312	Bp143	Blood pressure QTL 143	3	0.0002	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	182623426	219932796	Rat
8655655	Arrd2	Age-related retinal degeneration QTL 2	7.79		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	183970203	243914901	Rat
8655855	Arrd3	Age-related retinal degeneration QTL 3	3.07		lens clarity trait (VT:0001304)	cataract incidence/prevalence measurement (CMO:0001585)	1	183970203	243914901	Rat
631838	Niddm36	Non-insulin dependent diabetes mellitus QTL 36		0.01	insulin secretion trait (VT:0003564)	calculated pancreatic islet insulin release measurement (CMO:0001217)	1	184550676	229550676	Rat
1300145	Rf7	Renal function QTL 7	2.96		urine creatinine amount (VT:0010540)	urine creatinine level (CMO:0000125)	1	185145134	221264292	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	185356336	231689108	Rat
1582206	Kidm33	Kidney mass QTL 33	6.9		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	188377360	224054420	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	191019702	246062233	Rat
10059590	Kidm44	Kidney mass QTL 44	3.42	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	191033875	236033875	Rat
1358191	Ept10	Estrogen-induced pituitary tumorigenesis QTL 10	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	192825253	243914732	Rat
8552891	Epfw5	Epididymal fat weight QTL 5	4.4		epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	1	193113876	238113876	Rat
634338	Hcar4	Hepatocarcinoma resistance QTL 4	4.6		liver integrity trait (VT:0010547)	liver tumorous lesion number to liver area ratio (CMO:0001210)	1	193422268	214537671	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	195804352	257091168	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	195804352	257091168	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	195804352	257091168	Rat
631658	Cm7	Cardiac mass QTL 7	5.32	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	1	196248093	241248093	Rat
1358292	Cm37	Cardiac mass QTL 37	6.2	0.00000081	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	1	196248093	241248093	Rat
1600374	Mcs17	Mammary carcinoma susceptibility QTL 17	3		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	197670404	242670404	Rat
1641926	Teswt2	Testicular weight QTL 2	2.82		testis mass (VT:1000644)	both testes wet weight (CMO:0000175)	1	197697768	238755659	Rat
2302375	Bw83	Body weight QTL 83	4.87	0.0002	body mass (VT:0001259)	body weight (CMO:0000012)	1	197697768	242697768	Rat
61376	Bp42	Blood pressure QTL 42	23.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	197814409	242814409	Rat
1298084	Thym4	Thymus enlargement QTL 4	10.68		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	197814409	242814409	Rat
1357335	Bw39	Body weight QTL 39	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	1	197814409	242814409	Rat
1331790	Bp201	Blood pressure QTL 201	3.127		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	198211513	225126682	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	199050459	259647894	Rat
2292218	Kidm35	Kidney mass QTL 35			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	199368955	224569684	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	201554356	246554356	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	201554356	246554356	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	201554356	246554356	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	201554356	246554356	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	201554356	246554356	Rat
10059587	Bw173	Body weight QTL 173	3.23	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	1	202069611	247069611	Rat
1600363	Hc6	Hypercalciuria QTL 6	2.7		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	203995416	244113296	Rat

Markers in Region

D1Bda59

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	205,910,757 - 205,910,997 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	225,213,424 - 225,213,663	NCBI	Rnor6.0
Rnor_5.0	1	232,150,695 - 232,150,934	UniSTS	Rnor5.0
RGSC_v3.4	1	211,690,967 - 211,691,206	UniSTS	RGSC3.4
Celera	1	203,421,989 - 203,422,228	UniSTS
Cytogenetic Map	1	q43	UniSTS

RH139557

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	205,911,983 - 205,912,192 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	225,214,650 - 225,214,858	NCBI	Rnor6.0
Rnor_5.0	1	232,151,921 - 232,152,129	UniSTS	Rnor5.0
RGSC_v3.4	1	211,692,193 - 211,692,401	UniSTS	RGSC3.4
Celera	1	203,423,215 - 203,423,423	UniSTS
RH 3.4 Map	1	1518.4	UniSTS
Cytogenetic Map	1	q43	UniSTS

RH140140

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	205,911,750 - 205,911,958 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	225,214,417 - 225,214,624	NCBI	Rnor6.0
Rnor_5.0	1	232,151,688 - 232,151,895	UniSTS	Rnor5.0
RGSC_v3.4	1	211,691,960 - 211,692,167	UniSTS	RGSC3.4
Celera	1	203,422,982 - 203,423,189	UniSTS
Cytogenetic Map	1	q43	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	25	9	19	9	8	11	19	35	36	11	8
Low			32	32		32			55		5
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001398671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001398672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC108988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AH011300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ203291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ203292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ203293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ203294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ203295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ203296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U12527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000079456 ⟹ ENSRNOP00000069026

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	205,882,273 - 205,912,349 (+)	Ensembl
Rnor_6.0 Ensembl	1	225,184,939 - 225,215,015 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000088387 ⟹ ENSRNOP00000069017

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	205,893,136 - 205,911,344 (+)	Ensembl
Rnor_6.0 Ensembl	1	225,195,802 - 225,214,010 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112370 ⟹ ENSRNOP00000081127

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	205,893,136 - 205,970,926 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000116008 ⟹ ENSRNOP00000088074

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	205,893,136 - 205,911,344 (+)	Ensembl

RefSeq Acc Id:

NM_001398671 ⟹ NP_001385600

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	205,882,255 - 205,912,216 (+)	NCBI

RefSeq Acc Id:

NM_001398672 ⟹ NP_001385601

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	205,882,255 - 205,949,837 (+)	NCBI

RefSeq Acc Id:

XM_017588769 ⟹ XP_017444258

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	205,882,225 - 205,970,934 (+)	NCBI
Rnor_6.0	1	225,184,887 - 225,273,570 (+)	NCBI

Sequence:

show sequence

GACCTACAAGAGCCGCCTCCGCGCGCGGGGGCCCGGCCACTCGGAGCAGCTCTGCCGCGGGGAC
TGCACTGTCCGCCCTGCCAGACCCGTCCCGACTGGGACTCGCTGTCGCCAGCAGTCACAGCACT
ACGACCTCGGGCCCTTCGCCGGCAATGGCTGCGTCCTGGGGCTGAGCCCACAGGTTGTGTGACC
GAGATTCCCAAAAAGAGAGAGACTGATACAGAAAGAGAAGAAGGAGGGGCGGGTTCCTGGCAAG
GCGTTTGGTCCTGAGCAGAGTCCTGCAAAGATGGAGAAGGAGGAAGAGACAACCCGGGAGCTGC
TGCTGCCCAACTGGCAGGGCAGTGGCTCCCATGGGCTGACCATTGCCCAGAGGGATGATGGAGT
CTTTGTACAGGAGGTGATGCAGAACTCCCCTGCGGCCCGCACTGGGGTGGTCAAAGAGGGGGAC
CAGATTGTGGGTGCCACCATCTACTTTGACAACCTGCAGTCTGGTGAGGTGACCCAGTTGCTGA
ATACCATGGGGCATCACACTGTTGGCTTAAAGTTGCACCGTAAAGGGGACCGATCCCCCGAACC
TGGACAGACTTGGGCCCATGAAGTCTTCAGTTCCCGTAGCTCTGAGGTGGTTCTGAGCACAGCA
CGACCTTCATCCCTGGACGGTAATGACCAGAATAAACACAAGGAAGCTATCAACAAAACTGGGG
CAGCGTCAGGCTCCACCCCAGATGCAGGGCTGTAGCAATGGCCAGGAAGAAAAGTGCCCCCGCT
GGAGGTTGTTTTCGTGAGACTGTTCTTTGGAGCATTGTTCTAAAAATGGGAAATTACATCTTAC
CATGCCAAAGGAAACAAACACCTGCAGTTAGAGGGACACCTTCTCTGAGGTGGCCTTTTTGGAG
CAAGCACAGCTGTAGCTACAGCCACTTCTGGGTGGATGCTATGGCAGAAGTTGACAGGCGCTTT
CCTTGTTTGCAAGGGATGGGAATGTGGGCTTATTTTTGTAACTAGGGTGGGCTTTGGCAGCTAT
GGGTGTAGGGACTCTCTACTTATCCACCCAATAAACGTGTGTCAAGCATCA

hide sequence

RefSeq Acc Id:

XM_039091771 ⟹ XP_038947699

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	205,882,233 - 205,912,216 (+)	NCBI

RefSeq Acc Id:

XM_039091804 ⟹ XP_038947732

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	205,882,230 - 205,912,216 (+)	NCBI

RefSeq Acc Id:

XR_005492950

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	205,882,225 - 205,970,934 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001385600	(Get FASTA)	NCBI Sequence Viewer
	NP_001385601	(Get FASTA)	NCBI Sequence Viewer
	XP_017444258	(Get FASTA)	NCBI Sequence Viewer
	XP_038947699	(Get FASTA)	NCBI Sequence Viewer
	XP_038947732	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAL50985	(Get FASTA)	NCBI Sequence Viewer
	AAL50986	(Get FASTA)	NCBI Sequence Viewer
	ABB00049	(Get FASTA)	NCBI Sequence Viewer
	ABB00050	(Get FASTA)	NCBI Sequence Viewer
	ABB00051	(Get FASTA)	NCBI Sequence Viewer
	ABB00052	(Get FASTA)	NCBI Sequence Viewer
	ABB00053	(Get FASTA)	NCBI Sequence Viewer
	ABB00054	(Get FASTA)	NCBI Sequence Viewer
	EDM12766	(Get FASTA)	NCBI Sequence Viewer
	EDM12767	(Get FASTA)	NCBI Sequence Viewer
	EDM12768	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_017444258 ⟸ XM_017588769
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZUE6 (UniProtKB/TrEMBL), A6HZY5 (UniProtKB/TrEMBL), A6HZY6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEKEEETTRELLLPNWQGSGSHGLTIAQRDDGVFVQEVMQNSPAARTGVVKEGDQIVGATIYFD NLQSGEVTQLLNTMGHHTVGLKLHRKGDRSPEPGQTWAHEVFSSRSSEVVLSTARPSSLDGNDQ NKHKEAINKTGAASGSTPDAGL hide sequence

RefSeq Acc Id:

ENSRNOP00000069026 ⟸ ENSRNOT00000079456

RefSeq Acc Id:

ENSRNOP00000069017 ⟸ ENSRNOT00000088387

RefSeq Acc Id:	XP_038947732 ⟸ XM_039091804
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038947699 ⟸ XM_039091771
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSRNOP00000088074 ⟸ ENSRNOT00000116008

RefSeq Acc Id:

ENSRNOP00000081127 ⟸ ENSRNOT00000112370

RefSeq Acc Id:	NP_001385601 ⟸ NM_001398672
- Peptide Label:	isoform 2
- UniProtKB:	A6HZY6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001385600 ⟸ NM_001398671
- Peptide Label:	isoform 1
- UniProtKB:	A0A0G2JUA5 (UniProtKB/TrEMBL)

Protein Domains

PDZ

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:619779	AgrOrtholog
BioCyc Gene	G2FUF-56472	BioCyc
Ensembl Genes	ENSRNOG00000057569	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000069017.2	UniProtKB/TrEMBL
	ENSRNOP00000069026.1	UniProtKB/TrEMBL
	ENSRNOP00000081127	ENTREZGENE
	ENSRNOP00000081127.1	UniProtKB/TrEMBL
	ENSRNOP00000088074.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000079456.2	UniProtKB/TrEMBL
	ENSRNOT00000088387.2	UniProtKB/TrEMBL
	ENSRNOT00000112370	ENTREZGENE
	ENSRNOT00000112370.1	UniProtKB/TrEMBL
	ENSRNOT00000116008.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.42.10	UniProtKB/TrEMBL
InterPro	PDZ	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
KEGG Report	rno:191572	UniProtKB/TrEMBL
NCBI Gene	191572	ENTREZGENE
PANTHER	NEUROBLAST DIFFERENTIATION-ASSOCIATED PROTEIN AHNAK	UniProtKB/TrEMBL
	PDZ DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	PERIAXIN/AHNAK	UniProtKB/TrEMBL
Pfam	PDZ	UniProtKB/TrEMBL
PhenoGen	Ahnak	PhenoGen
PROSITE	PDZ	UniProtKB/TrEMBL
SMART	PDZ	UniProtKB/TrEMBL
Superfamily-SCOP	PDZ	UniProtKB/TrEMBL
UniProt	A0A0G2JU96_RAT	UniProtKB/TrEMBL
	A0A0G2JUA5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZUE6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AI04_RAT	UniProtKB/TrEMBL
	A6HZY5	ENTREZGENE, UniProtKB/TrEMBL
	A6HZY6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-06-15	Ahnak	AHNAK nucleoprotein	LOC686579	similar to AHNAK nucleoprotein isoform 2	Data Merged	1643240	APPROVED
2008-09-26	Ahnak	AHNAK nucleoprotein	Ahnak	AHNAK nucleoprotein (desmoyokin)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC686579	similar to AHNAK nucleoprotein isoform 2			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-20	Ahnak	AHNAK nucleoprotein (desmoyokin)			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Ahnak				Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localizes to intercalated discs	1304304
gene_disease	SLE patients displayed a higher frequency of homogeneous antinuclear antibody staining patterns	625427
gene_pathway	cleaved by granzyme B and caspase-3.	625427
gene_process	carboxyl-terminal doamain involved in actin bundling and stabalization of muscle contraction	1304304
gene_protein	700-kDa phosphoprotein with DNA binding properties	625427

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD