Fmod (fibromodulin) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Fmod (fibromodulin) Rattus norvegicus
Analyze
Symbol: Fmod
Name: fibromodulin
RGD ID: 619769
Description: Involved in skin development. Located in collagen-containing extracellular matrix and extracellular region. Biomarker of tendinitis. Orthologous to human FMOD (fibromodulin); INTERACTS WITH 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: collagen-binding 59 kDa protein; FM; keratan sulfate proteoglycan fibromodulin; KSPG fibromodulin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Candidate Gene For: Bp397
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21345,493,517 - 45,504,134 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,493,517 - 45,504,133 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1348,101,962 - 48,112,556 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,390,009 - 49,400,605 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,654,575 - 46,665,165 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01350,874,886 - 50,885,503 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1350,873,605 - 50,885,563 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01355,927,583 - 55,939,041 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41346,987,714 - 46,998,331 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11347,001,756 - 47,012,373 (+)NCBI
Celera1345,822,144 - 45,832,470 (+)NCBICelera
RH 3.4 Map13184.4RGD
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
capsaicin  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
cisplatin  (ISO)
cobalt atom  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
diazepam  (ISO)
diclofenac  (ISO)
diethylstilbestrol  (EXP,ISO)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethylparaben  (ISO)
fluoxetine  (EXP)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
glycidol  (EXP)
hydrogen peroxide  (ISO)
indometacin  (ISO)
inulin  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methoxychlor  (EXP)
microcystin-LR  (ISO)
monosodium L-glutamate  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenytoin  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propanal  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (EXP,ISO)
sulfadimethoxine  (EXP)
T-2 toxin  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
Tungsten carbide  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Female-specific hypertension loci on rat chromosome 13. Hoffman MJ, etal., Hypertension. 2013 Sep;62(3):557-63. doi: 10.1161/HYPERTENSIONAHA.113.01708. Epub 2013 Jul 1.
4. Functional and molecular alterations of the glomerular barrier in long-term diabetes in mice. Jeansson M, etal., Diabetologia. 2006 Sep;49(9):2200-9. Epub 2006 Jul 26.
5. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
6. Sustained expression of proteoglycans and collagen type III/type I ratio in a calcified tendinopathy model. Lui PP, etal., Rheumatology (Oxford). 2009 Dec 2.
7. Immunohistochemical localization of fibromodulin in the periodontium during cementogenesis and root formation in the rat molar. Matias MA, etal., J Periodontal Res. 2003 Oct;38(5):502-7.
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
10. Immunohistochemical localization and expression of fibromodulin in adult rat periodontium and inflamed human gingiva. Qian H, etal., Oral Dis. 2004 Jul;10(4):233-9.
11. GOA pipeline RGD automated data pipeline
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Comprehensive gene review and curation RGD comprehensive gene curation
14. Small proteoglycans in human diabetic nephropathy: discrepancy between glomerular expression and protein accumulation of decorin, biglycan, lumican, and fibromodulin. Schaefer L, etal., FASEB J. 2001 Mar;15(3):559-61. Epub 2001 Jan 19.
15. Differential expression of fibromodulin, a transforming growth factor-beta modulator, in fetal skin development and scarless repair. Soo C, etal., Am J Pathol. 2000 Aug;157(2):423-33.
Additional References at PubMed
PMID:20551380   PMID:22138190   PMID:23959432   PMID:24006456   PMID:26048315   PMID:26316108   PMID:27068509   PMID:27559042   PMID:27665369   PMID:37904680   PMID:38172726  


Genomics

Comparative Map Data
Fmod
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21345,493,517 - 45,504,134 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,493,517 - 45,504,133 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1348,101,962 - 48,112,556 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,390,009 - 49,400,605 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,654,575 - 46,665,165 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01350,874,886 - 50,885,503 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1350,873,605 - 50,885,563 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01355,927,583 - 55,939,041 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41346,987,714 - 46,998,331 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11347,001,756 - 47,012,373 (+)NCBI
Celera1345,822,144 - 45,832,470 (+)NCBICelera
RH 3.4 Map13184.4RGD
Cytogenetic Map13q13NCBI
FMOD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381203,340,628 - 203,351,122 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1203,340,628 - 203,351,758 (-)EnsemblGRCh38hg38GRCh38
GRCh371203,309,756 - 203,320,250 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361201,576,375 - 201,586,912 (-)NCBINCBI36Build 36hg18NCBI36
Build 341200,041,413 - 200,049,060NCBI
Celera1176,439,022 - 176,449,562 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1174,474,902 - 174,485,714 (-)NCBIHuRef
CHM1_11204,732,638 - 204,743,449 (-)NCBICHM1_1
T2T-CHM13v2.01202,603,493 - 202,613,991 (-)NCBIT2T-CHM13v2.0
Fmod
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,964,992 - 133,976,018 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1133,964,992 - 133,976,015 (+)EnsemblGRCm39 Ensembl
GRCm381134,037,254 - 134,048,280 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,037,254 - 134,048,277 (+)EnsemblGRCm38mm10GRCm38
MGSCv371135,934,092 - 135,944,854 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361135,853,926 - 135,864,688 (+)NCBIMGSCv36mm8
Celera1136,653,909 - 136,670,078 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.09NCBI
Fmod
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,328,743 - 39,340,258 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540639,328,743 - 39,340,113 (-)NCBIChiLan1.0ChiLan1.0
FMOD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1145,993,588 - 46,004,297 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01178,942,472 - 178,953,158 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11183,236,412 - 183,247,057 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1183,238,130 - 183,244,074 (-)Ensemblpanpan1.1panPan2
FMOD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.138102,106 - 112,267 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl38103,230 - 112,154 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha38192,095 - 202,277 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03898,889 - 109,072 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3898,893 - 108,988 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13891,412 - 101,593 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.038485,490 - 495,671 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.038699,365 - 709,547 (-)NCBIUU_Cfam_GSD_1.0
Fmod
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934472,036,724 - 72,047,975 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365671,271,252 - 1,282,841 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365671,271,401 - 1,282,651 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FMOD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl964,063,001 - 64,073,858 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1964,062,995 - 64,073,853 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2970,356,603 - 70,367,308 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FMOD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12525,992,006 - 26,002,909 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2525,992,228 - 26,003,109 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605526,768,097 - 26,779,048 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fmod
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248077,507,449 - 7,518,636 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248077,507,670 - 7,518,076 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fmod
38 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:179
Count of miRNA genes:128
Interacting mature miRNAs:153
Transcripts:ENSRNOT00000004382
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133124133158363171Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
4145117Mcs27Mammary carcinoma susceptibility QTL 270.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)134343790447841255Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134372077062022792Rat
12879436Bp395Blood pressure QTL 395arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134463918245700190Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879472Bp399Blood pressure QTL 399arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134522835847841255Rat

Markers in Region
D13Rat125  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,497,821 - 45,498,068 (+)MAPPERmRatBN7.2
Rnor_6.01350,879,191 - 50,879,437NCBIRnor6.0
Rnor_5.01355,932,728 - 55,932,974UniSTSRnor5.0
RGSC_v3.41346,992,019 - 46,992,265UniSTSRGSC3.4
RGSC_v3.41346,992,018 - 46,992,265RGDRGSC3.4
RGSC_v3.11347,005,943 - 47,006,315RGD
SHRSP x BN Map1314.8199UniSTS
SHRSP x BN Map1314.8199RGD
Cytogenetic Map13q13UniSTS
RH133402  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,503,765 - 45,503,953 (+)MAPPERmRatBN7.2
Rnor_6.01350,885,135 - 50,885,322NCBIRnor6.0
Rnor_5.01355,938,672 - 55,938,859UniSTSRnor5.0
RGSC_v3.41346,997,963 - 46,998,150UniSTSRGSC3.4
Celera1345,832,102 - 45,832,289UniSTS
RH 3.4 Map13171.9UniSTS
Cytogenetic Map13q13UniSTS
RH142446  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,503,702 - 45,503,880 (+)MAPPERmRatBN7.2
Rnor_6.01350,885,072 - 50,885,249NCBIRnor6.0
Rnor_5.01355,938,609 - 55,938,786UniSTSRnor5.0
RGSC_v3.41346,997,900 - 46,998,077UniSTSRGSC3.4
Celera1345,832,039 - 45,832,216UniSTS
RH 3.4 Map13184.4UniSTS
Cytogenetic Map13q13UniSTS
PMC133870P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,496,238 - 45,496,655 (+)MAPPERmRatBN7.2
Rnor_6.01350,877,608 - 50,878,024NCBIRnor6.0
Rnor_5.01355,931,145 - 55,931,561UniSTSRnor5.0
RGSC_v3.41346,990,436 - 46,990,852UniSTSRGSC3.4
Celera1345,824,866 - 45,825,282UniSTS
Cytogenetic Map13q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 26 2 2 11 2 6 9 10 33 10 6
Low 1 17 48 32 8 32 2 2 64 35 8 1 2
Below cutoff 7 7 7

Sequence


RefSeq Acc Id: ENSRNOT00000004382   ⟹   ENSRNOP00000004382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1345,493,517 - 45,504,133 (+)Ensembl
Rnor_6.0 Ensembl1350,873,605 - 50,885,563 (+)Ensembl
RefSeq Acc Id: NM_080698   ⟹   NP_542429
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21345,493,517 - 45,504,134 (+)NCBI
Rnor_6.01350,874,886 - 50,885,503 (+)NCBI
Rnor_5.01355,927,583 - 55,939,041 (+)NCBI
RGSC_v3.41346,987,714 - 46,998,331 (+)RGD
Celera1345,822,144 - 45,832,470 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_542429 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA57648 (Get FASTA)   NCBI Sequence Viewer  
  EDM09747 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000004382
  ENSRNOP00000004382.4
GenBank Protein P50609 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_542429   ⟸   NM_080698
- Peptide Label: precursor
- UniProtKB: P50609 (UniProtKB/Swiss-Prot),   A6ICA0 (UniProtKB/TrEMBL),   G3V6E7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000004382   ⟸   ENSRNOT00000004382
Protein Domains
LRRNT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P50609-F1-model_v2 AlphaFold P50609 1-376 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619769 AgrOrtholog
BioCyc Gene G2FUF-18257 BioCyc
Ensembl Genes ENSRNOG00000003183 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004382 ENTREZGENE
  ENSRNOT00000004382.7 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64507 UniProtKB/Swiss-Prot
NCBI Gene 64507 ENTREZGENE
PANTHER AGAP008170-PA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45712:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LRR_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fmod PhenoGen
PROSITE LRR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003183 RatGTEx
SMART LRR_BAC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_TYP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6ICA0 ENTREZGENE, UniProtKB/TrEMBL
  FMOD_RAT UniProtKB/Swiss-Prot
  G3V6E7 ENTREZGENE, UniProtKB/TrEMBL
  P50609 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Fmod  fibromodulin      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Fmod  fibromodulin      Symbol and Name status set to provisional 70820 PROVISIONAL