Kcnj16 (potassium inwardly-rectifying channel, subfamily J, member 16) - Rat Genome Database

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Gene: Kcnj16 (potassium inwardly-rectifying channel, subfamily J, member 16) Rattus norvegicus
Analyze
Symbol: Kcnj16
Name: potassium inwardly-rectifying channel, subfamily J, member 16
RGD ID: 61824
Description: Predicted to enable inward rectifier potassium channel activity. Involved in potassium ion transport; regulation of pH; and response to carbon dioxide. Located in basolateral plasma membrane. Used to study hypokalemia and metabolic acidosis. Orthologous to human KCNJ16 (potassium inwardly rectifying channel subfamily J member 16); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: BIR9; inward rectifier K(+) channel Kir5.1; inward rectifier potassium channel 16; Kir5.1; potassium channel, inwardly rectifying subfamily J member 16; potassium channel, inwardly rectifying subfamily J, member 16; potassium voltage-gated channel subfamily J member 16
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Kcnj16em1Mcwi  
Genetic Models: SS-Kcnj16em1Mcwi-/-
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21095,990,009 - 96,021,356 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1095,960,725 - 96,021,702 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10101,081,523 - 101,083,303 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.010100,544,500 - 100,546,280 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01095,952,661 - 95,954,441 (+)NCBIRnor_WKY
Rnor_6.01099,330,894 - 99,391,551 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1099,388,130 - 99,389,898 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01099,027,026 - 99,087,674 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410100,514,180 - 100,515,949 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110100,528,549 - 100,530,318 (+)NCBI
Celera1094,663,783 - 94,665,552 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. Essential role of Kir5.1 channels in renal salt handling and blood pressure control. Palygin O, etal., JCI Insight. 2017 Sep 21;2(18). pii: 92331. doi: 10.1172/jci.insight.92331. eCollection 2017 Sep 21.
4. Genetic mutation of Kcnj16 identifies Kir5.1-containing channels as key regulators of acute and chronic pH homeostasis. Puissant MM, etal., FASEB J. 2019 Apr;33(4):5067-5075. doi: 10.1096/fj.201802257R. Epub 2019 Jan 3.
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Kir5.1 underlies long-lived subconductance levels in heteromeric Kir4.1/Kir5.1 channels from Xenopus tropicalis. Shang L, etal., Biochem Biophys Res Commun. 2009 Oct 23;388(3):501-5. doi: 10.1016/j.bbrc.2009.08.032. Epub 2009 Aug 8.
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
10. In vivo formation of a proton-sensitive K+ channel by heteromeric subunit assembly of Kir5.1 with Kir4.1. Tanemoto M, etal., J Physiol. 2000 Jun 15;525 Pt 3:587-92.
11. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
12. pH dependence of the inwardly rectifying potassium channel, Kir5.1, and localization in renal tubular epithelia. Tucker SJ, etal., J Biol Chem 2000 Jun 2;275(22):16404-7.
Additional References at PubMed
PMID:7874445   PMID:12456399   PMID:14750965   PMID:15292049   PMID:15310750   PMID:15775962   PMID:20926613   PMID:22871113   PMID:31799617   PMID:33232300  


Genomics

Comparative Map Data
Kcnj16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21095,990,009 - 96,021,356 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1095,960,725 - 96,021,702 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10101,081,523 - 101,083,303 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.010100,544,500 - 100,546,280 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01095,952,661 - 95,954,441 (+)NCBIRnor_WKY
Rnor_6.01099,330,894 - 99,391,551 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1099,388,130 - 99,389,898 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01099,027,026 - 99,087,674 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410100,514,180 - 100,515,949 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110100,528,549 - 100,530,318 (+)NCBI
Celera1094,663,783 - 94,665,552 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
KCNJ16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381770,075,225 - 70,135,608 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1770,053,429 - 70,135,608 (+)EnsemblGRCh38hg38GRCh38
GRCh371768,071,366 - 68,131,749 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361765,583,021 - 65,643,344 (+)NCBINCBI36Build 36hg18NCBI36
Build 341765,612,589 - 65,643,339NCBI
Celera1764,643,318 - 64,703,632 (+)NCBICelera
Cytogenetic Map17q24.3NCBI
HuRef1763,457,561 - 63,518,274 (+)NCBIHuRef
CHM1_11768,137,477 - 68,197,868 (+)NCBICHM1_1
T2T-CHM13v2.01770,953,535 - 71,013,930 (+)NCBIT2T-CHM13v2.0
Kcnj16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911110,858,859 - 110,918,794 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11110,858,859 - 110,918,794 (+)EnsemblGRCm39 Ensembl
GRCm3811110,968,033 - 111,027,968 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11110,968,033 - 111,027,968 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711110,829,347 - 110,889,282 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611110,835,677 - 110,844,058 (+)NCBIMGSCv36mm8
Celera11122,716,155 - 122,778,458 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1175.01NCBI
Kcnj16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554782,775,702 - 2,802,501 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554782,775,702 - 2,833,821 (-)NCBIChiLan1.0ChiLan1.0
KCNJ16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11769,389,581 - 69,449,593 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1769,411,032 - 69,447,343 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01764,005,085 - 64,065,153 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
KCNJ16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1916,369,312 - 16,441,953 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl916,383,702 - 16,441,953 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha917,274,785 - 17,333,030 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0918,023,819 - 18,096,162 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl918,038,198 - 18,096,041 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1916,982,418 - 17,040,164 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0910,494,745 - 10,552,754 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0910,460,571 - 10,518,835 (-)NCBIUU_Cfam_GSD_1.0
Kcnj16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056029,989,581 - 10,013,038 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366553,488,338 - 3,489,597 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049366553,487,071 - 3,489,686 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNJ16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1210,393,179 - 10,558,169 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11210,393,172 - 10,538,423 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KCNJ16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11651,491,064 - 51,631,037 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1651,493,340 - 51,494,596 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607722,382,841 - 22,554,086 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcnj16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624801269,533 - 335,535 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624801269,449 - 335,535 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kcnj16
127 total Variants
miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir218-1rno-miR-218a-5pMirtarbaseexternal_infoMicroarrayFunctional MTI (Weak)18258830
Mir342rno-miR-342-3pMirtarbaseexternal_infoMicroarrayFunctional MTI (Weak)18258830
Mirlet7f2rno-let-7f-5pMirtarbaseexternal_infoMicroarrayFunctional MTI (Weak)18258830

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:71
Interacting mature miRNAs:74
Transcripts:ENSRNOT00000006238
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106674365598003205Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)107877551698279596Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1080515287101325465Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1085565469103884409Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087055121107211142Rat
2313856Bp342Blood pressure QTL 3424.40.0001life span trait (VT:0005372)age at time of death (CMO:0001193)108730761796121100Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087307617107211142Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1088539139107211142Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1090404397107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1090627439107057807Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090627439107211142Rat
1558652Bw57Body weight QTL 574.20.0008body mass (VT:0001259)body weight (CMO:0000012)1090910316107211142Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091228102104060283Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1092238497101012337Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
631558Bp137Blood pressure QTL 1370.013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)109472486096836268Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat

Markers in Region
RH127731  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21096,019,298 - 96,019,480 (+)MAPPERmRatBN7.2
Rnor_6.01099,389,494 - 99,389,675NCBIRnor6.0
Rnor_5.01099,085,617 - 99,085,798UniSTSRnor5.0
RGSC_v3.410100,515,544 - 100,515,725UniSTSRGSC3.4
Celera1094,665,147 - 94,665,328UniSTS
Cytogenetic Map10q32.1UniSTS


Genetic Models
This gene Kcnj16 is modified in the following models/strains

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 25 29 1
Low 6 3 11 3 27 6 27 4
Below cutoff 3 8 34 22 8 22 8 8 20 13 5 8

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000006238   ⟹   ENSRNOP00000006238
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1096,017,341 - 96,021,696 (+)Ensembl
Rnor_6.0 Ensembl1099,388,130 - 99,389,898 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095753   ⟹   ENSRNOP00000089334
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1095,989,956 - 96,021,702 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099422   ⟹   ENSRNOP00000095581
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1095,960,856 - 96,021,702 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102350   ⟹   ENSRNOP00000084131
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1095,976,654 - 96,021,702 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104190   ⟹   ENSRNOP00000083795
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1095,960,856 - 96,021,702 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108962   ⟹   ENSRNOP00000089990
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1095,994,728 - 96,021,696 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110126   ⟹   ENSRNOP00000093074
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1095,988,524 - 96,021,702 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110709   ⟹   ENSRNOP00000080269
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1095,960,725 - 96,021,702 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111834   ⟹   ENSRNOP00000096926
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1095,980,563 - 96,021,702 (+)Ensembl
RefSeq Acc Id: NM_053314   ⟹   NP_445766
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21096,017,935 - 96,019,704 (+)NCBI
Rnor_6.01099,388,130 - 99,389,899 (+)NCBI
Rnor_5.01099,027,026 - 99,087,674 (+)NCBI
RGSC_v3.410100,514,180 - 100,515,949 (+)RGD
Celera1094,663,783 - 94,665,552 (+)RGD
Sequence:
RefSeq Acc Id: XM_006247570   ⟹   XP_006247632
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21095,990,009 - 96,021,356 (+)NCBI
Rnor_6.01099,359,906 - 99,391,551 (+)NCBI
Rnor_5.01099,027,026 - 99,087,674 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_445766   ⟸   NM_053314
- UniProtKB: Q68G21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247632   ⟸   XM_006247570
- Peptide Label: isoform X1
- UniProtKB: Q68G21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000006238   ⟸   ENSRNOT00000006238
RefSeq Acc Id: ENSRNOP00000093074   ⟸   ENSRNOT00000110126
RefSeq Acc Id: ENSRNOP00000095581   ⟸   ENSRNOT00000099422
RefSeq Acc Id: ENSRNOP00000089990   ⟸   ENSRNOT00000108962
RefSeq Acc Id: ENSRNOP00000083795   ⟸   ENSRNOT00000104190
RefSeq Acc Id: ENSRNOP00000096926   ⟸   ENSRNOT00000111834
RefSeq Acc Id: ENSRNOP00000080269   ⟸   ENSRNOT00000110709
RefSeq Acc Id: ENSRNOP00000084131   ⟸   ENSRNOT00000102350
RefSeq Acc Id: ENSRNOP00000089334   ⟸   ENSRNOT00000095753
Protein Domains
IRK   IRK_C

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P52191-F1-model_v2 AlphaFold P52191 1-419 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:61824 AgrOrtholog
BioCyc Gene G2FUF-22809 BioCyc
Ensembl Genes ENSRNOG00000004713 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000006238.3 UniProtKB/TrEMBL
  ENSRNOP00000080269.1 UniProtKB/TrEMBL
  ENSRNOP00000083795.1 UniProtKB/TrEMBL
  ENSRNOP00000084131.1 UniProtKB/TrEMBL
  ENSRNOP00000089334 ENTREZGENE
  ENSRNOP00000089334.1 UniProtKB/TrEMBL
  ENSRNOP00000089990.1 UniProtKB/TrEMBL
  ENSRNOP00000093074.1 UniProtKB/TrEMBL
  ENSRNOP00000095581.1 UniProtKB/TrEMBL
  ENSRNOP00000096926.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006238.5 UniProtKB/TrEMBL
  ENSRNOT00000095753 ENTREZGENE
  ENSRNOT00000095753.1 UniProtKB/TrEMBL
  ENSRNOT00000099422.1 UniProtKB/TrEMBL
  ENSRNOT00000102350.1 UniProtKB/TrEMBL
  ENSRNOT00000104190.1 UniProtKB/TrEMBL
  ENSRNOT00000108962.1 UniProtKB/TrEMBL
  ENSRNOT00000110126.1 UniProtKB/TrEMBL
  ENSRNOT00000110709.1 UniProtKB/TrEMBL
  ENSRNOT00000111834.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.1400 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7107402 IMAGE-MGC_LOAD
InterPro Ig_E-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IRK_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  K_chnl_inward-rec_Kir UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  K_chnl_inward-rec_Kir5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  K_chnl_inward-rec_Kir_cyto UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kir_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29719 UniProtKB/TrEMBL
MGC_CLONE MGC:93314 IMAGE-MGC_LOAD
NCBI Gene 29719 ENTREZGENE
PANTHER PTHR11767 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11767:SF24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam IRK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IRK_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kcnj16 PhenoGen
PIRSF GIRK_kir UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS KIR5CHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KIRCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF81296 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC219640
UniProt KCJ16_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q68G21 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q9JI87 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Kcnj16  potassium inwardly-rectifying channel, subfamily J, member 16      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression highly expressed in renal tubular epithelial cells 61644