D930028M14Rik (RIKEN cDNA D930028M14 gene)

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Gene: D930028M14Rik (RIKEN cDNA D930028M14 gene) Mus musculus

Analyze

Symbol:

D930028M14Rik

Name:

RIKEN cDNA D930028M14 gene

RGD ID:

5685724

MGI Page

MGI

Description:

Acts upstream of or within in utero embryonic development. Is expressed in central nervous system; dorsal root ganglion; and retina.

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

EG434147

RGD Orthologs

Human

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	24,851,882 - 24,856,055 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	24,851,846 - 24,856,054 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	25,152,457 - 25,156,630 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	25,152,457 - 25,156,627 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	25,937,476 - 25,941,643 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	24,861,217 - 24,865,383 (+)	NCBI		MGSCv36	mm8
Celera	7	19,767,939 - 19,772,106 (+)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	13.73	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

craniosynostosis (ISO)

schizophrenia (ISO)

syndromic intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

in utero embryonic development (IMP)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal brachial plexus formation (IEA)

abnormal eye muscle morphology (IEA)

abnormal hypoglossal nerve topology (IEA)

abnormal pulmonary valve cusp morphology (IEA)

absent abducens nerve (IEA)

absent hypoglossal canal (IEA)

absent hypoglossal nerve (IEA)

herniated liver (IEA)

preweaning lethality, complete penetrance (IEA)

retropleural edema (IEA)

umbilical vein stenosis (IEA)

vagus nerve compression (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:14610273	PMID:16141072	PMID:16141073	PMID:16782087	PMID:17444492	PMID:21267068	PMID:21677750
PMID:24316575	PMID:27996060	PMID:28185240	PMID:29539633	PMID:30973865	PMID:38355793

Genomics

Comparative Map Data

D930028M14Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	24,851,882 - 24,856,055 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	24,851,846 - 24,856,054 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	25,152,457 - 25,156,630 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	25,152,457 - 25,156,627 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	25,937,476 - 25,941,643 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	24,861,217 - 24,865,383 (+)	NCBI		MGSCv36	mm8
Celera	7	19,767,939 - 19,772,106 (+)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	13.73	NCBI

POU2F2-AS2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	42,152,536 - 42,157,521 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	42,152,569 - 42,157,523 (+)	Ensembl	GRCh38		hg38	GRCh38
Cytogenetic Map	19	q13.2	NCBI
T2T-CHM13v2.0	19	44,971,911 - 44,976,896 (+)	NCBI		T2T-CHM13v2.0

Variants

Variants in D930028M14Rik
164 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	196
Count of miRNA genes:	178
Interacting mature miRNAs:	186
Transcripts:	ENSMUST00000098678
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300722	Sle3_m	systemic lupus erythmatosus susceptibility 3 (mouse)			Not determined		7	3511728	87142720	Mouse
4141566	Femwf8_m	femur work to failure 8 (mouse)			Not determined			13032485	47032621	Mouse
25314307	Mlh1fc2_m	MLH1 foci count 2 (mouse)					7	6502999	133501729	Mouse
1301041	Prnr2_m	prion resistance 2 (mouse)			Not determined		7	18728794	39674033	Mouse
12904742	Litsq2_m	litter size QTL 2 (mouse)					7	22673887	56674033	Mouse
1301622	Eae12_m	susceptibility to experimental allergic encephalomyelitis 12 (mouse)			Not determined		7	19280015	53280104	Mouse
11354952	Pdcc1_m	plasmacytoid dentritic cell compartment 1 (mouse)					7	23066531	57066531	Mouse
38501068	Tip1_m	tuberculosis immunophenotype 1, spleen CFU (mouse)					7	3602999	72549748	Mouse
1301115	Lrdm1_m	lymphoproliferation (Fas) renal disease modifier 1 (mouse)			Not determined		7	3352048	24879418	Mouse
25314314	Sccor1_m	synaptonemal complex length to mean MLH1 count ratio 1 (mouse)					7	13333925	47349748	Mouse
10449139	Eosn1_m	eosinophil differential 1 (mouse)					7	12480877	46480877	Mouse
1301052	Bhr6_m	bronchial hyperresponsiveness 6 (mouse)			Not determined		7	19842250	53842367	Mouse
11522751	Cocia17_m	cocaine-induced activity, QTL 17 (mouse)					7	13135204	47135204	Mouse
12792978	Fbmd3_m	femoral bone mineral density 3, females only (mouse)					7	7050288	142367832	Mouse
1301158	Eae4_m	susceptibility to experimental allergic encephalomyelitis 4 (mouse)			Not determined		7	19147398	141919804	Mouse
1301572	Sluc30_m	susceptibility to lung cancer 30 (mouse)			Not determined		7	2431696	36431844	Mouse
1357699	Nhdlq6_m	non-HDL QTL 6 (mouse)			Not determined		7	9988867	43988984	Mouse
10412199	Sst2_m	susceptibility to tuberculosis 2 (mouse)			Not determined		7	18728794	119485380	Mouse
10449158	Eosn3_m	eosinophil differential 3 (mouse)					7	12480877	46480877	Mouse
1558893	Spir1_m	Streptococcus pneumoniae infection resistance 1 (mouse)			Not determined		7	10305798	44305936	Mouse
1301709	Bdt4_m	bone density traits 4 (mouse)			Not determined		7	22888572	56888716	Mouse
1559016	Drsi_m	DCC-related Spp1 induction (mouse)			Not determined		7	16637293	49159331	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_045847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_045848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK142847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BE456889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000098678

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	24,851,846 - 24,856,054 (+)	Ensembl
GRCm38.p6 Ensembl	7	25,152,457 - 25,156,627 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000186424

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	24,854,494 - 24,855,644 (+)	Ensembl
GRCm38.p6 Ensembl	7	25,155,069 - 25,156,219 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000246711

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	24,855,401 - 24,856,051 (+)	Ensembl

RefSeq Acc Id:

NR_045847

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	24,851,882 - 24,856,055 (+)	NCBI
GRCm38	7	25,152,457 - 25,156,630 (+)	ENTREZGENE
Celera	7	19,767,939 - 19,772,112 (+)	ENTREZGENE
cM Map	7		ENTREZGENE

Sequence:

show sequence

CTCTGCCTCTCTCTCCCTTGCTTCTCTTCCTTTCTTTCCCGGAGCCGCACCCAAGCCCCCACCC
CATGTACCCCTTACCCCTACCTCTGGGGGGGGCCAGCCATCACCCCATACTCCCCTACTGCAGG
AGAGTTTAGGGGGGCTGAGAGCTTGGAGAGCCAGGAGAGGGGACTCAAAGAAAGAGGAAACACT
CAGGAAGGGATGGAGAGATGGACAGAGCTGAATGCCTGTGGGAAGCACGGAGAGAAGCAGAGGA
CTATGGGAGGCCAGGAGCAGGAGACCTGTGGGCCTGGTGAGCGGCACAGACCTCTGCACTCGGT
GGGATTCCCAGCAGGCCTCGCTCCAAGCTCCCAGGGTTACTCTGAGGTCCGCCTATGTTGCGGA
TCAGAGCTCTGAATTCTCAGCCTGCCTTAATTTGCTGTGGGACTGTCCAGGATTCCAGGGACTC
ACGGATCCTAGCCTGATAAAGTCACTGAAGACTCTGCCTCAAACGGTCCTGGGTTGTTCTTCCA
AGTCACCTCCTTAGACCCAGCGATGCAAGGCTTGTCCCCCACAAGTGAGCTCCAGCTCCTGAGA
TCTTCAGGGCTCCTGCACGGGGAGTATAGGAGTCTGTCCTCGTCGCCTCCGTGATGTAGCATGC
GGAGGGCTACAGGGGACTGCAACTGGCCACGGGGACTGCAAGGCCAGAGCTGCGTTCCTGGCTC
CAACAGCTGATAAGCCTGTCACCGGTACCACATCCACAGTGAGACCTGTGTTGGCTTCTCGAGC
CCTTCAGGAACACCCTCCCAAAGATGTCCCGGAGGCCCTGTGTGTATCATCTAAACTCTGTCCT
CTGACCACATTCTTTGCAGCCTCACACTTGGGCTGATAACACTTGTGCCTGATCCCGGGGGTGC
CTCTGAGGCCTCCGAAGTTCTCCTGCTTCTCGGCATCTCCAGGCCTCGTATGGGAGACATCCCA
GGGTGGGGCAGGGTGCTGCAGTAATAAATGGATGGATCTAGATCTG

hide sequence

RefSeq Acc Id:

NR_045848

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	24,854,494 - 24,856,055 (+)	NCBI
GRCm38	7	25,155,069 - 25,156,630 (+)	NCBI
Celera	7	19,767,939 - 19,772,112 (+)	ENTREZGENE
cM Map	7		ENTREZGENE

Sequence:

show sequence

CTTCTCAAGAGCTCCCCAATATTCCTCCAAAGTCAGATGGTGACCCCTCTGGACCTCCTGTTGG
CCAGACTCAAAGAAAGAGGAAACACTCAGGAAGGGATGGAGAGATGGACAGAGCTGAATGCCTG
TGGGAAGCACGGAGAGAAGCAGAGGACTATGGGAGGCCAGGAGCAGGAGACCTGTGGGCCTGGT
GAGCGGCACAGACCTCTGCACTCGGTGGGATTCCCAGCAGGCCTCGCTCCAAGCTCCCAGGGTT
ACTCTGAGGTCCGCCTATGTTGCGGATCAGAGCTCTGAATTCTCAGCCTGCCTTAATTTGCTGT
GGGACTGTCCAGGATTCCAGGGACTCACGGATCCTAGCCTGATAAAGTCACTGAAGACTCTGCC
TCAAACGGTCCTGGGTTGTTCTTCCAAGTCACCTCCTTAGACCCAGCGATGCAAGGCTTGTCCC
CCACAAGTGAGCTCCAGCTCCTGAGATCTTCAGGGCTCCTGCACGGGGAGTATAGGAGTCTGTC
CTCGTCGCCTCCGTGATGTAGCATGCGGAGGGCTACAGGGGACTGCAACTGGCCACGGGGACTG
CAAGGCCAGAGCTGCGTTCCTGGCTCCAACAGCTGATAAGCCTGTCACCGGTACCACATCCACA
GTGAGACCTGTGTTGGCTTCTCGAGCCCTTCAGGAACACCCTCCCAAAGATGTCCCGGAGGCCC
TGTGTGTATCATCTAAACTCTGTCCTCTGACCACATTCTTTGCAGCCTCACACTTGGGCTGATA
ACACTTGTGCCTGATCCCGGGGGTGCCTCTGAGGCCTCCGAAGTTCTCCTGCTTCTCGGCATCT
CCAGGCCTCGTATGGGAGACATCCCAGGGTGGGGCAGGGTGCTGCAGTAATAAATGGATGGATC
TAGATCTG

hide sequence

Protein Sequences


GenBank Protein	BAE25208	(Get FASTA)	NCBI Sequence Viewer

Promoters

RGD ID:

6892240

Promoter ID:

EPDNEW_M9571

Type:

single initiation site

Name:

D930028M14Rik_1

Description:

Mus musculus RIKEN cDNA D930028M14 gene , transcript variant2, long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	7	25,152,461 - 25,152,521	EPDNEW

RGD ID:

15093204

Promoter ID:

EPDNEWNC_M1116

Type:

single initiation site

Name:

D930028M14Rik_1

Description:

RIKEN cDNA D930028M14 gene [Source:MGISymbol;Acc:MGI:3687343]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	7	25,152,461 - 25,152,521	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000074274	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000098678	ENTREZGENE
MGD	MGI:3687343	ENTREZGENE
NCBI Gene	D930028M14Rik	ENTREZGENE
PhenoGen	D930028M14Rik	PhenoGen
RNAcentral	URS000075A8AB	RNACentral
	URS000075ECBC	RNACentral
UniProt	Q3UQ36_MOUSE	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Mammalian Phenotype