Ankhd1 (ankyrin repeat and KH domain containing 1) - Rat Genome Database

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Gene: Ankhd1 (ankyrin repeat and KH domain containing 1) Rattus norvegicus
Analyze
Symbol: Ankhd1 (Ensembl: Eif4ebp3)
Name: ankyrin repeat and KH domain containing 1 (Ensembl:eukaryotic translation initiation factor 4E binding protein 3)
RGD ID: 4892133
Description: Predicted to enable RNA binding activity. Predicted to be involved in innate immune response. Predicted to be active in cytoplasm. Orthologous to several human genes including ANKHD1 (ankyrin repeat and KH domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; buspirone.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ankyrin repeat and KH domain-containing protein 1
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,436,296 - 28,534,954 (+)NCBIGRCr8
mRatBN7.21828,161,882 - 28,260,917 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,162,311 - 28,268,024 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1828,289,538 - 28,388,062 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,051,622 - 29,150,153 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,386,864 - 28,485,391 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,386,906 - 29,485,611 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,386,809 - 29,492,718 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,093,401 - 29,190,685 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1827,890,421 - 27,988,091 (+)NCBICelera
Cytogenetic Map18p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-pinene  (ISO)
Aroclor 1254  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buspirone  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
clobetasol  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
enzyme inhibitor  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
haloperidol  (ISO)
hydralazine  (ISO)
hydrogen cyanide  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
methylmercury chloride  (ISO)
ozone  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (ISO)
potassium cyanide  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
troglitazone  (ISO)
trovafloxacin  (EXP)
tungsten  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function
protein binding  (IPI,ISO)
RNA binding  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo Sorting to Dense-Core Vesicles. Topalidou I, etal., PLoS Genet. 2016 May 18;12(5):e1006074. doi: 10.1371/journal.pgen.1006074. eCollection 2016 May.
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:12947022   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Ankhd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,436,296 - 28,534,954 (+)NCBIGRCr8
mRatBN7.21828,161,882 - 28,260,917 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,162,311 - 28,268,024 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1828,289,538 - 28,388,062 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,051,622 - 29,150,153 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,386,864 - 28,485,391 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,386,906 - 29,485,611 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,386,809 - 29,492,718 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,093,401 - 29,190,685 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1827,890,421 - 27,988,091 (+)NCBICelera
Cytogenetic Map18p11NCBI
ANKHD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,401,833 - 140,539,849 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,401,814 - 140,539,856 (+)EnsemblGRCh38hg38GRCh38
GRCh375139,781,418 - 139,919,434 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365139,761,613 - 139,899,625 (+)NCBINCBI36Build 36hg18NCBI36
Celera5135,858,059 - 135,996,193 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5134,926,568 - 135,064,780 (+)NCBIHuRef
CHM1_15139,214,501 - 139,352,689 (+)NCBICHM1_1
T2T-CHM13v2.05140,927,267 - 141,065,280 (+)NCBIT2T-CHM13v2.0
Ankhd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,693,656 - 36,791,961 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,693,040 - 36,791,966 (+)EnsemblGRCm39 Ensembl
GRCm381836,560,603 - 36,658,908 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,559,987 - 36,658,913 (+)EnsemblGRCm38mm10GRCm38
MGSCv371836,720,257 - 36,818,562 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361836,936,040 - 37,035,576 (+)NCBIMGSCv36mm8
Celera1837,010,375 - 37,107,994 (+)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
ANKHD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24135,661,557 - 135,807,114 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15133,800,883 - 133,946,665 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05135,768,442 - 135,913,976 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15141,884,910 - 142,031,612 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5141,884,908 - 142,031,298 (+)Ensemblpanpan1.1panPan2
ANKHD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,618,287 - 35,742,050 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,618,282 - 35,744,734 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,656,633 - 32,775,478 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,073,948 - 36,191,878 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,073,943 - 36,191,878 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,125,806 - 33,244,752 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,993,175 - 34,112,289 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,746,141 - 34,864,980 (+)NCBIUU_Cfam_GSD_1.0
Ankhd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213152,102,365 - 152,225,546 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365319,385,924 - 9,509,472 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365319,385,958 - 9,509,406 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKHD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,166,167 - 142,298,097 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12142,166,314 - 142,298,097 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22148,109,886 - 148,241,940 (+)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Ankhd1
218 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:222
Count of miRNA genes:165
Interacting mature miRNAs:185
Transcripts:ENSRNOT00000024825
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182654808246969551Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182654808246969551Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182654808246969551Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182654808246969551Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182654808246969551Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182654808246969551Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182654808246969551Rat

Markers in Region
UniSTS:237784  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21828,178,565 - 28,178,993 (+)MAPPERmRatBN7.2
Rnor_6.01829,403,265 - 29,403,692NCBIRnor6.0
Rnor_5.01829,108,341 - 29,108,768UniSTSRnor5.0
RGSC_v3.41829,216,051 - 29,216,478UniSTSRGSC3.4
Celera1827,905,814 - 27,906,241UniSTS
Cytogenetic Map18p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 30 55 39 19 39 6 6 74 35 41 11 6
Low 13 2 2 2 2 5 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001204053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC097756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC167100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF566015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ190564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB578806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB610048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB704953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF113119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO405927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM036500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ086998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: NM_001204053   ⟹   NP_001190982
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,436,394 - 28,534,954 (+)NCBI
mRatBN7.21828,162,343 - 28,260,917 (+)NCBI
Rnor_6.01829,386,906 - 29,485,611 (+)NCBI
Rnor_5.01829,093,401 - 29,190,685 (+)NCBI
Celera1827,890,421 - 27,988,091 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001415723   ⟹   NP_001402652
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,436,394 - 28,534,954 (+)NCBI
mRatBN7.21828,162,343 - 28,260,917 (+)NCBI
RefSeq Acc Id: XM_063277050   ⟹   XP_063133120
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,436,299 - 28,505,898 (+)NCBI
RefSeq Acc Id: XM_063277051   ⟹   XP_063133121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,436,296 - 28,505,898 (+)NCBI
RefSeq Acc Id: NP_001190982   ⟸   NM_001204053
- Peptide Label: isoform 1
- UniProtKB: E9PTK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001402652   ⟸   NM_001415723
- Peptide Label: isoform 2
- UniProtKB: E9PTK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133121   ⟸   XM_063277051
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063133120   ⟸   XM_063277050
- Peptide Label: isoform X1
Protein Domains
K Homology

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K916-F1-model_v2 AlphaFold A0A0G2K916 1-2615 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700737
Promoter ID:EPDNEW_R11245
Type:multiple initiation site
Name:Eif4ebp3_1
Description:eukaryotic translation initiation factor 4E binding protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11246  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01829,386,865 - 29,386,925EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:4892133 AgrOrtholog
BioCyc Gene G2FUF-7873 BioCyc
Ensembl Genes ENSRNOG00000030247 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024825 ENTREZGENE
  ENSRNOT00000024825.6 UniProtKB/TrEMBL
  ENSRNOT00000082079.2 UniProtKB/TrEMBL
  ENSRNOT00000096723 ENTREZGENE
  ENSRNOT00000096723.1 UniProtKB/TrEMBL
  ENSRNOT00000097192.1 UniProtKB/TrEMBL
  ENSRNOT00000109205.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  3.30.1370.10 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  KH-I_ANKHD1 UniProtKB/TrEMBL
  KH_dom UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/TrEMBL
KEGG Report rno:100529260 UniProtKB/TrEMBL
NCBI Gene 100529260 ENTREZGENE
PANTHER ANKYRIN REPEAT AND KH DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  MASK PROTEIN UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  Ank_4 UniProtKB/TrEMBL
  KH_1 UniProtKB/TrEMBL
PhenoGen Ankhd1 PhenoGen
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  KH_TYPE_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030247 RatGTEx
SMART ANK UniProtKB/TrEMBL
  SM00322 UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
  SSF54791 UniProtKB/TrEMBL
UniProt A0A0G2K916_RAT UniProtKB/TrEMBL
  A0A8I6A225_RAT UniProtKB/TrEMBL
  A0A8I6A9N7_RAT UniProtKB/TrEMBL
  A0A8I6AP24_RAT UniProtKB/TrEMBL
  E9PTK9 ENTREZGENE, UniProtKB/TrEMBL
  Q5XI12_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-02-08 Ankhd1  ankyrin repeat and KH domain containing 1      Symbol and Name status set to provisional 70820 PROVISIONAL