Spetex2el6 (Spetex-2E protein like 6) - Rat Genome Database

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Gene: Spetex2el6 (Spetex-2E protein like 6) Rattus norvegicus
Analyze
Symbol: Spetex2el6 (Ensembl: LOC120094604)
Name: Spetex-2E protein like 6 (Ensembl:uncharacterized LOC120094604)
RGD ID: 41402348
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC120094604; uncharacterized LOC120094604; uncharacterized protein LOC120094604; uncharacterized protein Spetex2el6
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr892,705,725 - 2,723,034 (+)NCBIGRCr8
mRatBN7.292,618,846 - 2,636,236 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl92,618,885 - 2,636,043 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Spetex2el6
201 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000073673   ⟹   ENSRNOP00000065419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,618,885 - 2,636,043 (+)Ensembl
RefSeq Acc Id: XM_039084352   ⟹   XP_038940280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,706,131 - 2,723,034 (+)NCBI
mRatBN7.292,619,210 - 2,636,166 (+)NCBI
RefSeq Acc Id: XM_039084353   ⟹   XP_038940281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,706,129 - 2,723,034 (+)NCBI
mRatBN7.292,619,196 - 2,636,222 (+)NCBI
RefSeq Acc Id: XM_039084354   ⟹   XP_038940282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,706,143 - 2,714,056 (+)NCBI
mRatBN7.292,619,216 - 2,627,103 (+)NCBI
RefSeq Acc Id: XM_039084356   ⟹   XP_038940284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,705,725 - 2,723,034 (+)NCBI
mRatBN7.292,618,846 - 2,636,154 (+)NCBI
RefSeq Acc Id: XM_063267815   ⟹   XP_063123885
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,705,729 - 2,714,056 (+)NCBI
RefSeq Acc Id: XP_038940284   ⟸   XM_039084356
- Peptide Label: isoform X4
- UniProtKB: M0R7J0 (UniProtKB/TrEMBL),   A0A8J8YIF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940281   ⟸   XM_039084353
- Peptide Label: isoform X2
- UniProtKB: M0RDI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940280   ⟸   XM_039084352
- Peptide Label: isoform X1
- UniProtKB: M0RDI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940282   ⟸   XM_039084354
- Peptide Label: isoform X3
- UniProtKB: M0RDI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000065419   ⟸   ENSRNOT00000073673
RefSeq Acc Id: XP_063123885   ⟸   XM_063267815
- Peptide Label: isoform X5
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R7J0-F1-model_v2 AlphaFold M0R7J0 1-160 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-28472 BioCyc
Ensembl Genes ENSRNOG00000062772 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000065538 UniProtKB/TrEMBL
  ENSRNOG00000066837 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000051066.6 UniProtKB/TrEMBL
  ENSRNOT00000071886.3 UniProtKB/TrEMBL
  ENSRNOT00000073673.2 UniProtKB/TrEMBL
InterPro DUF622 UniProtKB/TrEMBL
NCBI Gene LOC120094604 ENTREZGENE
PANTHER 2610042L04RIK PROTEIN-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam Takusan UniProtKB/TrEMBL
PhenoGen Spetex2el6 PhenoGen
RatGTEx ENSRNOG00000062772 RatGTEx
  ENSRNOG00000065538 RatGTEx
  ENSRNOG00000066837 RatGTEx
UniProt A0A8J8YIF0 ENTREZGENE, UniProtKB/TrEMBL
  M0R7J0 ENTREZGENE, UniProtKB/TrEMBL
  M0RDI7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-16 Spetex2el6  Spetex-2E protein like 6  Spetex2el1  Spetex-2E protein like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Spetex2el1  Spetex-2E protein like 1  LOC120094604  uncharacterized LOC120094604  Symbol and Name Changed 1299863 APPROVED
2021-01-27 LOC120094604  uncharacterized LOC120094604      Symbol and Name status set to provisional 70820 PROVISIONAL