LOC120094543 (U4 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120094543 (U4 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120094543
Name: U4 spliceosomal RNA
RGD ID: 41389138
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: U4
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr889,465,265 - 9,465,333 (-)NCBIGRCr8
mRatBN7.281,180,290 - 1,180,379 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl81,180,290 - 1,180,379 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl81,180,290 - 1,180,379 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl81,160,579 - 1,160,668 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map8q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120094543
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr889,465,265 - 9,465,333 (-)NCBIGRCr8
mRatBN7.281,180,290 - 1,180,379 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl81,180,290 - 1,180,379 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl81,180,290 - 1,180,379 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl81,160,579 - 1,160,668 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map8q11NCBI
RNU4-25P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388128,010,382 - 128,010,611 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8128,010,382 - 128,010,611 (-)EnsemblGRCh38hg38GRCh38
GRCh378129,022,628 - 129,022,857 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map8q24.21NCBI
CHM1_18129,062,926 - 129,063,155 (-)NCBICHM1_1
T2T-CHM13v2.08129,138,233 - 129,138,462 (-)NCBIT2T-CHM13v2.0
LOC119866261
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2616,175,448 - 16,175,560 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02616,438,624 - 16,438,736 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2616,438,624 - 16,438,736 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12616,399,636 - 16,399,748 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02616,476,765 - 16,476,877 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02616,517,746 - 16,517,858 (+)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)813402289Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000084716
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl81,180,290 - 1,180,379 (-)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-31841 BioCyc
Ensembl Genes ENSRNOG00000058998 Ensembl
NCBI Gene LOC120094543 ENTREZGENE
PhenoGen LOC120094543 PhenoGen
RatGTEx ENSRNOG00000058998 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120094543  U4 spliceosomal RNA  U4  U4 spliceosomal RNA  Data merged from RGD:15012215 737654 PROVISIONAL
2021-01-27 LOC120094543  U4 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U4  U4 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL