LOC120102121 (U4 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120102121 (U4 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120102121
Name: U4 spliceosomal RNA
RGD ID: 41382617
Description: Orthologous to human RNU4-92P (RNA, U4 small nuclear 92, pseudogene).
Type: snrna
RefSeq Status: MODEL
Previously known as: U4
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83167,638,484 - 167,638,625 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3167,638,484 - 167,638,625 (-)EnsemblGRCr8
mRatBN7.23147,218,608 - 147,218,749 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3147,218,608 - 147,218,749 (-)EnsemblmRatBN7.2
Rnor_6.0 Ensembl3155,054,419 - 155,054,560 (-)NCBIrn6Rnor6.0
Cytogenetic Map3q42NCBI
JBrowse:




References

Genomics

Comparative Map Data
LOC120102121
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83167,638,484 - 167,638,625 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3167,638,484 - 167,638,625 (-)EnsemblGRCr8
mRatBN7.23147,218,608 - 147,218,749 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3147,218,608 - 147,218,749 (-)EnsemblmRatBN7.2
Rnor_6.0 Ensembl3155,054,419 - 155,054,560 (-)NCBIrn6Rnor6.0
Cytogenetic Map3q42NCBI
RNU4-92P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381488,820,297 - 88,820,432 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1488,820,297 - 88,820,432 (+)Ensemblhg38GRCh38
GRCh371489,286,641 - 89,286,776 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map14q31.3NCBI
CHM1_11489,224,449 - 89,224,584 (+)NCBICHM1_1
T2T-CHM13v2.01483,043,902 - 83,044,037 (+)NCBIT2T-CHM13v2.0


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
1300113Bp176Blood pressure QTL 1763.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3166376089177728348Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3166376089189428310Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161799493176036425Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3161799270187311134Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3166376089189428310Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3141508991177728348Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3160357340167835660Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005503131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000090484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3167,638,484 - 167,638,625 (-)Ensembl
mRatBN7.2 Ensembl3147,218,608 - 147,218,749 (-)Ensembl
RefSeq Acc Id: XR_005503131
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83167,638,484 - 167,638,625 (-)NCBI
mRatBN7.23147,218,608 - 147,218,749 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41382617 AgrOrtholog
BioCyc Gene G2FUF-47013 BioCyc
Ensembl Genes ENSRNOG00000056709 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000090484 ENTREZGENE
NCBI Gene LOC120102121 ENTREZGENE
PhenoGen LOC120102121 PhenoGen
RatGTEx ENSRNOG00000056709 RatGTEx
RNAcentral URS000069BF05 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120102121  U4 spliceosomal RNA  U4  U4 spliceosomal RNA  Data merged from RGD:15010457 737654 PROVISIONAL
2021-01-27 LOC120102121  U4 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U4  U4 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL