Atp5mj-ps1 (ATP synthase membrane subunit j, pseudogene 1) - Rat Genome Database

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Gene: Atp5mj-ps1 (ATP synthase membrane subunit j, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Atp5mj-ps1 (Ensembl: ENSRNOG00000066701)
Name: ATP synthase membrane subunit j, pseudogene 1
RGD ID: 41368180
Description: ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); Herpes Simplex Encephalitis 3 (ortholog); INTERACTS WITH 17beta-estradiol; thioacetamide; Triptolide
Type: pseudo (Ensembl: protein_coding)
RefSeq Status: MODEL
Previously known as: ATP synthase membrane subunit j; ATP synthase subunit ATP5MPL, mitochondrial; Atp5mj; Atp5mpl; LOC120099911
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81177,906,666 - 177,907,056 (-)NCBIGRCr8
mRatBN7.21168,472,019 - 168,472,630 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1168,472,329 - 168,472,610 (-)EnsemblmRatBN7.2 Ensembl
Rnor_5.01190,738,267 - 190,738,449 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41172,267,931 - 172,268,661 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1166,324,888 - 166,325,070 (-)NCBICelera
Cytogenetic Map1q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Identification of two proteins associated with mammalian ATP synthase. Meyer B, etal., Mol Cell Proteomics. 2007 Oct;6(10):1690-9. Epub 2007 Jun 17.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18614015   PMID:21873635  


Genomics

Comparative Map Data
Atp5mj-ps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81177,906,666 - 177,907,056 (-)NCBIGRCr8
mRatBN7.21168,472,019 - 168,472,630 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1168,472,329 - 168,472,610 (-)EnsemblmRatBN7.2 Ensembl
Rnor_5.01190,738,267 - 190,738,449 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41172,267,931 - 172,268,661 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1166,324,888 - 166,325,070 (-)NCBICelera
Cytogenetic Map1q34NCBI
ATP5MJ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814103,912,288 - 103,921,529 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14103,912,288 - 103,928,269 (-)EnsemblGRCh38hg38GRCh38
GRCh3714104,378,625 - 104,387,866 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3614103,448,380 - 103,457,619 (-)NCBINCBI36Build 36hg18NCBI36
Build 3414103,448,379 - 103,457,619NCBI
Celera1484,432,866 - 84,442,144 (-)NCBICelera
Cytogenetic Map14q32.33NCBI
HuRef1484,558,145 - 84,567,395 (-)NCBIHuRef
CHM1_114104,317,224 - 104,326,501 (-)NCBICHM1_1
T2T-CHM13v2.01498,149,583 - 98,158,840 (-)NCBIT2T-CHM13v2.0
Atp5mj
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555382,654,283 - 2,658,610 (-)NCBIChiLan1.0ChiLan1.0
ATP5MJ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215105,071,708 - 105,080,157 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114104,288,210 - 104,296,659 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01484,538,422 - 84,547,088 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114104,347,083 - 104,355,679 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14104,347,462 - 104,355,108 (-)Ensemblpanpan1.1panPan2
ATP5MJ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1871,600,422 - 71,605,615 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha871,112,009 - 71,117,183 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0871,878,010 - 71,883,189 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1871,566,736 - 71,571,900 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0871,606,975 - 71,612,350 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0872,005,683 - 72,010,866 (-)NCBIUU_Cfam_GSD_1.0
Atp5mj
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086402,461,868 - 2,466,137 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366211,293,189 - 1,294,775 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366211,291,209 - 1,294,915 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5MJ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.27131,028,035 - 131,034,043 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5MJ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12481,847,533 - 81,858,516 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2481,846,548 - 81,858,367 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605369,170,578 - 69,179,395 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp5mj
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247341,073,059 - 1,077,552 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp5mj-ps1
2 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1151162512201278233Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1143506580212458660Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1151162512201278233Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1155866514200866514Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1151646613196646613Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
61347Bp197Blood pressure QTL 1974.2arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1158633083203633083Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144017057197814409Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
2303622Vencon6Ventilatory control QTL 60.001respiration trait (VT:0001943)respiration rate (CMO:0000289)1154561505199561505Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1149448574221264292Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118944897199050459Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1144267353222987745Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
9685799Bp375Blood pressure QTL 375arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
9685802Bp376Blood pressure QTL 376arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1126540680171540680Rat
737974Bp161Blood pressure QTL 1610.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1164747558181133855Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1123350408182418476Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
634315Niddm45Non-insulin dependent diabetes mellitus QTL 457.16blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1144267916172949660Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
61379Bp44Blood pressure QTL 4419.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144267916174133260Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1156677124218753816Rat
6893347Bw98Body weight QTL 980.20.53body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
724550Thym3Thymus enlargement QTL 37.820.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
2312558Glom17Glomerulus QTL 173.90.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1166532971191278129Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
71118Thym1Thymus enlargement QTL 110.170.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1164747424209747424Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1136830018181830018Rat
6893361Bw104Body weight QTL 1040.590.27body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393213533942Rat
738006Anxrr14Anxiety related response QTL 1440.00035locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
1558645Bw55Body weight QTL 553.20.004body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1582204Livw1Liver weight QTL 13.60.0003liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)1155422851172949803Rat
634348Bp138Blood pressure QTL 138arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501168883176Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
738028Anxrr12Anxiety related response QTL 124.90.00001locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512201278233Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1156677124201278233Rat
631654Bp107Blood pressure QTL 107arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350408181759564Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350581201284552Rat
631548Bp88Blood pressure QTL 8850.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1156677124176484451Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1123350408182418476Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1151162512201278233Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000044231   ⟹   ENSRNOP00000067503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1168,472,329 - 168,472,610 (-)Ensembl
RefSeq Acc Id: XM_039101135   ⟹   XP_038957063
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21168,472,019 - 168,472,630 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-57738 BioCyc
Ensembl Genes ENSRNOG00000066701 Ensembl
NCBI Gene LOC120099911 ENTREZGENE
PhenoGen Atp5mj-ps1 PhenoGen
RatGTEx ENSRNOG00000066701 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-15 Atp5mj-ps1  ATP synthase membrane subunit j, pseudogene 1  Atp5Mj-ps1  ATP synthase membrane subunit j, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-03-15 Atp5Mj-ps1  ATP synthase membrane subunit j, pseudogene 1  Atp5Mmj-ps1  ATP synthase membrane subunit j, pseudogene 1  Symbol changed 629549 APPROVED
2022-03-15 Atp5Mmj-ps1  ATP synthase membrane subunit j, pseudogene 1  ATP5MJ-ps1  ATP synthase membrane subunit j, pseudogene 1  Symbol changed 629549 APPROVED
2022-03-15 ATP5MJ-ps1  ATP synthase membrane subunit j, pseudogene 1  Atp5mj  ATP synthase membrane subunit j  Data merged from RGD:2322889 737654 PROVISIONAL
2022-03-15 ATP5MJ-ps1  ATP synthase membrane subunit j, pseudogene 1  ATP5MJ-ps1  ATP synthase membrane subunit j, pseudogene 1  Type changed (type changed from [protein-coding] to [pseudo]) 629549 APPROVED
2022-03-15 ATP5MJ-ps1  ATP synthase membrane subunit j, pseudogene 1  LOC120099911  ATP synthase subunit ATP5MPL, mitochondrial  Name and Symbol changed 629549 APPROVED
2021-01-27 LOC120099911  ATP synthase subunit ATP5MPL, mitochondrial      Symbol and Name status set to provisional 70820 PROVISIONAL
2020-12-10 Atp5mj  ATP synthase membrane subunit j  Atp5mpl  ATP synthase membrane subunit 6.8PL  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-12-14 Atp5mpl  ATP synthase membrane subunit 6.8PL  LOC100360056  6.8 kDa mitochondrial proteolipid  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100360056  6.8 kDa mitochondrial proteolipid      Symbol and Name status set to provisional 70820 PROVISIONAL