LOC120097318 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120097318 (U6 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120097318
Name: U6 spliceosomal RNA
RGD ID: 41363845
Description: Orthologous to human RNU6-715P (RNA, U6 small nuclear 715, pseudogene).
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815102,054,171 - 102,054,274 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl15102,054,171 - 102,054,274 (+)EnsemblGRCr8
mRatBN7.21595,647,068 - 95,647,171 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1595,647,068 - 95,647,171 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl15103,800,788 - 103,800,891 (+)NCBIrn6Rnor6.0
Cytogenetic Map15q24NCBI
JBrowse:




References

Genomics

Comparative Map Data
LOC120097318
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815102,054,171 - 102,054,274 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl15102,054,171 - 102,054,274 (+)EnsemblGRCr8
mRatBN7.21595,647,068 - 95,647,171 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1595,647,068 - 95,647,171 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl15103,800,788 - 103,800,891 (+)NCBIrn6Rnor6.0
Cytogenetic Map15q24NCBI
RNU6-715P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382147,495,438 - 147,495,540 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2147,495,438 - 147,495,540 (-)Ensemblhg38GRCh38
GRCh372148,253,006 - 148,253,108 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q22.3NCBI
CHM1_12148,258,729 - 148,258,831 (-)NCBICHM1_1
T2T-CHM13v2.02147,945,609 - 147,945,711 (-)NCBIT2T-CHM13v2.0
Gm25549
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,001,395 - 131,001,488 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,001,395 - 131,001,488 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381131,073,658 - 131,073,751 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,073,658 - 131,073,751 (-)Ensemblmm10GRCm38
Cytogenetic Map1E4NCBI
LOC119873176
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha856,955,215 - 56,955,321 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0857,634,077 - 57,634,182 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl857,634,077 - 57,634,182 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1857,323,854 - 57,323,960 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0857,361,596 - 57,361,702 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0857,703,782 - 57,703,888 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0

Variants

.
Variants in LOC120097318
2 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1581519Cm59Cardiac mass QTL 592.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)158885347095840528Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005494526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000077627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl15102,054,171 - 102,054,274 (+)Ensembl
mRatBN7.2 Ensembl1595,647,068 - 95,647,171 (+)Ensembl
RefSeq Acc Id: XR_005494526
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,054,171 - 102,054,274 (+)NCBI
mRatBN7.21595,647,068 - 95,647,171 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41363845 AgrOrtholog
BioCyc Gene G2FUF-12440 BioCyc
Ensembl Genes ENSRNOG00000054577 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000077627 ENTREZGENE
NCBI Gene LOC120097318 ENTREZGENE
PhenoGen LOC120097318 PhenoGen
RatGTEx ENSRNOG00000054577 RatGTEx
RNAcentral URS0000721A74 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120097318  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15008780 737654 PROVISIONAL
2021-01-27 LOC120097318  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL