LOC120097659 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120097659 (U6 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120097659
Name: U6 spliceosomal RNA
RGD ID: 41325054
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81645,901,027 - 45,901,128 (-)NCBIGRCr8
mRatBN7.21639,168,154 - 39,168,255 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1639,168,154 - 39,168,255 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1641,951,273 - 41,951,374 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map16p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120097659
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81645,901,027 - 45,901,128 (-)NCBIGRCr8
mRatBN7.21639,168,154 - 39,168,255 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1639,168,154 - 39,168,255 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1641,951,273 - 41,951,374 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map16p11NCBI
RNU6-66P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381373,112,915 - 73,113,018 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1373,112,915 - 73,113,018 (-)EnsemblGRCh38hg38GRCh38
GRCh371373,687,052 - 73,687,155 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map13q22.1NCBI
HuRef1354,384,425 - 54,384,528 (-)NCBIHuRef
CHM1_11373,654,613 - 73,654,716 (-)NCBICHM1_1
T2T-CHM13v2.01372,334,350 - 72,334,453 (-)NCBIT2T-CHM13v2.0
LOC119873546
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha919,071,716 - 19,071,822 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0920,377,810 - 20,377,916 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl920,377,810 - 20,377,916 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1919,230,543 - 19,230,649 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0919,413,456 - 19,413,562 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0919,558,912 - 19,559,018 (+)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005495207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000080329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1639,168,154 - 39,168,255 (-)Ensembl
RefSeq Acc Id: XR_005495207
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81645,901,027 - 45,901,128 (-)NCBI
mRatBN7.21639,168,154 - 39,168,255 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-11446 BioCyc
Ensembl Genes ENSRNOG00000056682 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000080329 ENTREZGENE
NCBI Gene LOC120097659 ENTREZGENE
PhenoGen LOC120097659 PhenoGen
RatGTEx ENSRNOG00000056682 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120097659  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15010438 737654 PROVISIONAL
2021-01-27 LOC120097659  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL