LOC120095805 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120095805 (U6 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120095805
Name: U6 spliceosomal RNA
RGD ID: 41319938
Description: Predicted to be located in nuclear speck; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine (ortholog); ferric oxide (ortholog); testosterone (ortholog).
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81130,142,020 - 30,142,126 (+)NCBIGRCr8
mRatBN7.21116,655,090 - 16,655,196 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1116,655,090 - 16,655,196 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)111283104625121472Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005491569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_005491569
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81130,142,020 - 30,142,126 (+)NCBI
mRatBN7.21116,655,090 - 16,655,196 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22145 BioCyc
Ensembl Genes ENSRNOG00000064256 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000109383 ENTREZGENE
NCBI Gene LOC120095805 ENTREZGENE
PhenoGen LOC120095805 PhenoGen
RatGTEx ENSRNOG00000064256 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120095805  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:150344621 737654 PROVISIONAL
2021-08-31 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL
2021-01-27 LOC120095805  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL