LOC120097510 (spindlin-1-like) - Rat Genome Database

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Gene: LOC120097510 (spindlin-1-like) Rattus norvegicus
Analyze
Symbol: LOC120097510
Name: spindlin-1-like
RGD ID: 41311446
Description: Predicted to be involved in gamete generation. Predicted to be located in nucleus.
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr816223,890 - 224,929 (-)NCBIGRCr8
mRatBN7.216217,000 - 218,039 (-)NCBImRatBN7.2mRatBN7.2
Cytogenetic Map16p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Genomics

Variants

.
Variants in LOC120097510
2 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2325838Bp347Blood pressure QTL 3470.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1613080679Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039095187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_039095187   ⟹   XP_038951115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr816223,890 - 224,929 (-)NCBI
mRatBN7.216217,000 - 218,039 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038951115 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000014787.6
RefSeq Acc Id: XP_038951115   ⟸   XM_039095187
- UniProtKB: A0A8L2Q712 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12303 BioCyc
Ensembl Genes ENSRNOG00000067284 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014787.6 UniProtKB/TrEMBL
Gene3D-CATH Spindlin/Ssty UniProtKB/TrEMBL
InterPro SPIN/Ssty UniProtKB/TrEMBL
  SPIN/Ssty_sf UniProtKB/TrEMBL
NCBI Gene LOC120097510 ENTREZGENE
PANTHER SPINDLIN UniProtKB/TrEMBL
  SPINDLIN-1 UniProtKB/TrEMBL
Pfam Spin-Ssty UniProtKB/TrEMBL
PhenoGen LOC120097510 PhenoGen
RatGTEx ENSRNOG00000067284 RatGTEx
UniProt A0A8L2Q712 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120097510  spindlin-1-like      Symbol and Name status set to provisional 70820 PROVISIONAL