LOC120094927 (U1 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120094927 (U1 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120094927
Name: U1 spliceosomal RNA
RGD ID: 41297475
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: U1
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8928,079,449 - 28,079,606 (-)NCBIGRCr8
mRatBN7.2920,582,906 - 20,583,063 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl920,582,906 - 20,583,063 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl924,194,494 - 24,194,651 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map9q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120094927
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8928,079,449 - 28,079,606 (-)NCBIGRCr8
mRatBN7.2920,582,906 - 20,583,063 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl920,582,906 - 20,583,063 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl924,194,494 - 24,194,651 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map9q13NCBI
RNVU1-34
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381758,679,527 - 58,679,690 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1758,679,527 - 58,679,690 (-)EnsemblGRCh38hg38GRCh38
GRCh371756,756,888 - 56,757,051 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17q22NCBI
CHM1_11756,822,422 - 56,822,585 (-)NCBICHM1_1
T2T-CHM13v2.01759,547,392 - 59,547,555 (-)NCBIT2T-CHM13v2.0
Gm23099
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,194,722 - 19,194,860 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl719,194,722 - 19,194,860 (-)EnsemblGRCm39 Ensembl
GRCm38719,460,797 - 19,460,935 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,460,797 - 19,460,935 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map7A3NCBI
LOC119865253
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha223,879,298 - 3,879,460 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0223,960,186 - 3,960,348 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl223,960,186 - 3,960,348 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1223,744,065 - 3,744,227 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0223,807,037 - 3,807,199 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0223,812,207 - 3,812,369 (+)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005489614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000082948
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl920,582,906 - 20,583,063 (-)Ensembl
RefSeq Acc Id: XR_005489614
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8928,079,449 - 28,079,606 (-)NCBI
mRatBN7.2920,582,906 - 20,583,063 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-28067 BioCyc
Ensembl Genes ENSRNOG00000053170 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000082948 ENTREZGENE
NCBI Gene LOC120094927 ENTREZGENE
PhenoGen LOC120094927 PhenoGen
RatGTEx ENSRNOG00000053170 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120094927  U1 spliceosomal RNA  U1  U1 spliceosomal RNA  Data merged from RGD:15007716 737654 PROVISIONAL
2021-01-27 LOC120094927  U1 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U1  U1 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL