LOC120094862 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120094862 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120094862
Name: U6 spliceosomal RNA
RGD ID: 41290364
Description: Orthologous to human RNU6-640P (RNA, U6 small nuclear 640, pseudogene).
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8945,458,036 - 45,458,142 (+)NCBIGRCr8
mRatBN7.2937,962,141 - 37,962,247 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl937,962,141 - 37,962,247 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl942,296,648 - 42,296,754 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map9q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120094862
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8945,458,036 - 45,458,142 (+)NCBIGRCr8
mRatBN7.2937,962,141 - 37,962,247 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl937,962,141 - 37,962,247 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl942,296,648 - 42,296,754 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map9q21NCBI
RNU6-640P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38286,515,204 - 86,515,308 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl286,515,204 - 86,515,308 (-)EnsemblGRCh38hg38GRCh38
GRCh37286,742,327 - 86,742,431 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2p11.2NCBI
CHM1_1286,672,379 - 86,672,483 (-)NCBICHM1_1
T2T-CHM13v2.0286,517,218 - 86,517,322 (-)NCBIT2T-CHM13v2.0
Gm26439
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391186,328,136 - 86,328,241 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1186,328,136 - 86,328,241 (-)EnsemblGRCm39 Ensembl
GRCm381186,437,310 - 86,437,415 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1186,437,310 - 86,437,415 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11CNCBI
LOC119870546
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha232,760,760 - 32,760,867 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,177,150 - 36,177,257 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,177,150 - 36,177,257 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,229,866 - 33,229,973 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,097,574 - 34,097,681 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,850,245 - 34,850,352 (-)NCBIUU_Cfam_GSD_1.0


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005489561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000081956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl937,962,141 - 37,962,247 (+)Ensembl
RefSeq Acc Id: XR_005489561
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8945,458,036 - 45,458,142 (+)NCBI
mRatBN7.2937,962,141 - 37,962,247 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-27836 BioCyc
Ensembl Genes ENSRNOG00000059692 Ensembl
NCBI Gene LOC120094862 ENTREZGENE
PhenoGen LOC120094862 PhenoGen
RatGTEx ENSRNOG00000059692 RatGTEx
RNAcentral URS00007239FA RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120094862  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15012752 737654 PROVISIONAL
2021-01-27 LOC120094862  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL