LOC120097292 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120097292 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120097292 (Ensembl: U6)
Name: U6 spliceosomal RNA
RGD ID: 41261712
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81579,416,639 - 79,416,745 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1579,416,639 - 79,416,745 (-)EnsemblGRCr8
mRatBN7.21573,008,673 - 73,008,779 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1573,008,673 - 73,008,779 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl5141,522,271 - 141,522,377 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl226,415,389 - 26,415,495 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl175,938,436 - 75,938,542 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl6104,314,104 - 104,314,210 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl772,666,497 - 72,666,603 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1648,041,919 - 48,042,025 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl836,157,434 - 36,157,540 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1412,026,689 - 12,026,795 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1630,667,601 - 30,667,707 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1326,963,303 - 26,963,409 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1058,702,564 - 58,702,670 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl2228,059,072 - 228,059,178 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1116,655,090 - 16,655,196 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl670,813,893 - 70,813,999 (+)EnsemblmRatBN7.2
mRatBN7.2 EnsemblX15,390,052 - 15,390,158 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1741,675,625 - 41,675,731 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl182,497,262 - 2,497,368 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl148,330,468 - 8,330,574 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl141,153,338 - 1,153,444 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1596,681,691 - 96,681,797 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl3118,319,647 - 118,319,753 (+)EnsemblmRatBN7.2
mRatBN7.2 EnsemblX131,991,651 - 131,991,757 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1847,142,396 - 47,142,502 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl339,629,133 - 39,629,239 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl557,985,035 - 57,985,141 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1576,173,011 - 76,173,117 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl434,210,184 - 34,210,290 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1085,918,001 - 85,918,107 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl235,528,616 - 35,528,722 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl6120,492,486 - 120,492,592 (-)EnsemblmRatBN7.2
mRatBN7.2 EnsemblX26,937,453 - 26,937,559 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1745,438,594 - 45,438,700 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl689,930,717 - 89,930,823 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl950,425,749 - 50,425,855 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl2224,015,573 - 224,015,679 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1421,391,651 - 21,391,757 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl282,944,492 - 82,944,598 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1815,518,520 - 15,518,626 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl283,782,193 - 83,782,299 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl773,233,178 - 73,233,284 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl863,594,040 - 63,594,146 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl5129,832,346 - 129,832,452 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl168,791,097 - 68,791,203 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl69,344,990 - 9,345,096 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl941,123,228 - 41,123,334 (-)EnsemblmRatBN7.2
Cytogenetic Map15q21NCBI
JBrowse:




References

Genomics

Variants

.
Variants in LOC120097292
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
724548Niddm55Non-insulin dependent diabetes mellitus QTL 550.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)156832736073699069Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)155284790873690657Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
2313080Bss65Bone structure and strength QTL 653.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)156099046873690657Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005494502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000093829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1573,008,673 - 73,008,779 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000164330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1579,416,639 - 79,416,745 (-)Ensembl
RefSeq Acc Id: XR_005494502
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81579,416,639 - 79,416,745 (-)NCBI
mRatBN7.21573,008,673 - 73,008,779 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12812 BioCyc
Ensembl Genes ENSRNOG00000062872 Ensembl
  ENSRNOG00000063323 Ensembl
  ENSRNOG00000063428 Ensembl
  ENSRNOG00000063622 Ensembl
  ENSRNOG00000063963 Ensembl
  ENSRNOG00000064256 Ensembl
  ENSRNOG00000064676 Ensembl
  ENSRNOG00000064804 Ensembl
  ENSRNOG00000065299 Ensembl
  ENSRNOG00000065540 Ensembl
  ENSRNOG00000065588 Ensembl
  ENSRNOG00000065625 Ensembl
  ENSRNOG00000066032 Ensembl
  ENSRNOG00000066053 Ensembl
  ENSRNOG00000066073 Ensembl
  ENSRNOG00000066360 Ensembl
  ENSRNOG00000066819 Ensembl
  ENSRNOG00000066905 Ensembl
  ENSRNOG00000066923 Ensembl
  ENSRNOG00000067206 Ensembl
  ENSRNOG00000067348 Ensembl
  ENSRNOG00000067349 Ensembl
  ENSRNOG00000067418 Ensembl
  ENSRNOG00000067456 Ensembl
  ENSRNOG00000067488 Ensembl
  ENSRNOG00000067580 Ensembl
  ENSRNOG00000067906 Ensembl
  ENSRNOG00000068007 Ensembl
  ENSRNOG00000068385 Ensembl
  ENSRNOG00000068454 Ensembl
  ENSRNOG00000068463 Ensembl
  ENSRNOG00000068558 Ensembl
  ENSRNOG00000068782 Ensembl
  ENSRNOG00000068819 Ensembl
  ENSRNOG00000068957 Ensembl
  ENSRNOG00000069081 Ensembl
  ENSRNOG00000069131 Ensembl
  ENSRNOG00000069228 Ensembl
  ENSRNOG00000069322 Ensembl
  ENSRNOG00000069677 Ensembl
  ENSRNOG00000069745 Ensembl
  ENSRNOG00000069934 Ensembl
  ENSRNOG00000070235 Ensembl
  ENSRNOG00000070552 Ensembl
  ENSRNOG00000070649 Ensembl
  ENSRNOG00000070790 Ensembl
  ENSRNOG00000080691 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000164330 ENTREZGENE
NCBI Gene LOC120097292 ENTREZGENE
PhenoGen LOC120097292 PhenoGen
RatGTEx ENSRNOG00000062872 RatGTEx
  ENSRNOG00000063323 RatGTEx
  ENSRNOG00000063428 RatGTEx
  ENSRNOG00000063622 RatGTEx
  ENSRNOG00000063963 RatGTEx
  ENSRNOG00000064256 RatGTEx
  ENSRNOG00000064676 RatGTEx
  ENSRNOG00000064804 RatGTEx
  ENSRNOG00000065299 RatGTEx
  ENSRNOG00000065540 RatGTEx
  ENSRNOG00000065588 RatGTEx
  ENSRNOG00000065625 RatGTEx
  ENSRNOG00000066032 RatGTEx
  ENSRNOG00000066053 RatGTEx
  ENSRNOG00000066073 RatGTEx
  ENSRNOG00000066360 RatGTEx
  ENSRNOG00000066819 RatGTEx
  ENSRNOG00000066905 RatGTEx
  ENSRNOG00000066923 RatGTEx
  ENSRNOG00000067206 RatGTEx
  ENSRNOG00000067348 RatGTEx
  ENSRNOG00000067349 RatGTEx
  ENSRNOG00000067418 RatGTEx
  ENSRNOG00000067456 RatGTEx
  ENSRNOG00000067488 RatGTEx
  ENSRNOG00000067580 RatGTEx
  ENSRNOG00000067906 RatGTEx
  ENSRNOG00000068007 RatGTEx
  ENSRNOG00000068385 RatGTEx
  ENSRNOG00000068454 RatGTEx
  ENSRNOG00000068463 RatGTEx
  ENSRNOG00000068558 RatGTEx
  ENSRNOG00000068782 RatGTEx
  ENSRNOG00000068819 RatGTEx
  ENSRNOG00000068957 RatGTEx
  ENSRNOG00000069081 RatGTEx
  ENSRNOG00000069131 RatGTEx
  ENSRNOG00000069228 RatGTEx
  ENSRNOG00000069322 RatGTEx
  ENSRNOG00000069677 RatGTEx
  ENSRNOG00000069745 RatGTEx
  ENSRNOG00000069934 RatGTEx
  ENSRNOG00000070235 RatGTEx
  ENSRNOG00000070552 RatGTEx
  ENSRNOG00000070649 RatGTEx
  ENSRNOG00000070790 RatGTEx
  ENSRNOG00000080691 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120097292  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:150345264 737654 PROVISIONAL
2021-08-31 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL
2021-01-27 LOC120097292  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL