Snora16b (small nucleolar RNA, H/ACA box 16B) - Rat Genome Database

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Gene: Snora16b (small nucleolar RNA, H/ACA box 16B) Rattus norvegicus
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Symbol: Snora16b (Ensembl: LOC120094448)
Name: small nucleolar RNA, H/ACA box 16B (Ensembl:small nucleolar RNA SNORA16B/SNORA16A family)
RGD ID: 41251909
Description: ASSOCIATED WITH Creutzfeldt-Jakob disease (ortholog); INTERACTS WITH 2-hydroxypropanoic acid (ortholog); cadmium dichloride (ortholog); rac-lactic acid (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: Gm24896; LOC120094448; predicted gene, 24896; small nucleolar RNA SNORA16B/SNORA16A family
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8810,653,778 - 10,653,910 (+)NCBIGRCr8
mRatBN7.282,368,882 - 2,369,014 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl82,368,882 - 2,369,014 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl82,381,982 - 2,382,114 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map8q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Snora16b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8810,653,778 - 10,653,910 (+)NCBIGRCr8
mRatBN7.282,368,882 - 2,369,014 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl82,368,882 - 2,369,014 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl82,381,982 - 2,382,114 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map8q11NCBI
SNORA16B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,352,818 - 212,352,950 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1212,352,816 - 212,352,950 (+)EnsemblGRCh38hg38GRCh38
GRCh371212,526,160 - 212,526,292 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera1185,751,784 - 185,751,916 (+)NCBICelera
Cytogenetic Map1q32.3NCBI
HuRef1183,201,493 - 183,201,625 (+)NCBIHuRef
CHM1_11213,799,025 - 213,799,157 (+)NCBICHM1_1
T2T-CHM13v2.01211,597,504 - 211,597,636 (+)NCBIT2T-CHM13v2.0
Gm24896
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3995,111,399 - 5,111,533 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl95,111,399 - 5,111,533 (+)EnsemblGRCm39 Ensembl
GRCm3895,111,399 - 5,111,533 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl95,111,399 - 5,111,533 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map9A1NCBI


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)813402289Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005488761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000086369
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl82,368,882 - 2,369,014 (+)Ensembl
RefSeq Acc Id: XR_005488761
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8810,653,778 - 10,653,910 (+)NCBI
mRatBN7.282,368,882 - 2,369,014 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-31826 BioCyc
Ensembl Genes ENSRNOG00000059346 Ensembl
NCBI Gene LOC120094448 ENTREZGENE
PhenoGen Snora16b PhenoGen
RatGTEx ENSRNOG00000059346 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-04-11 Snora16b  small nucleolar RNA, H/ACA box 16B  LOC120094448  small nucleolar RNA SNORA16B/SNORA16A family  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120094448  small nucleolar RNA SNORA16B/SNORA16A family  Gm24896  predicted gene, 24896  Data merged from RGD:15012496 737654 PROVISIONAL
2021-01-27 LOC120094448  small nucleolar RNA SNORA16B/SNORA16A family      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Gm24896  predicted gene, 24896      Symbol and Name status set to provisional 45752 PROVISIONAL