LOC120097276 (small nucleolar RNA SNORD126) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC120097276 (small nucleolar RNA SNORD126) Rattus norvegicus
Analyze
Symbol: LOC120097276
Name: small nucleolar RNA SNORD126
RGD ID: 41210769
Description: Orthologous to human SNORD126 (small nucleolar RNA, C/D box 126); INTERACTS WITH DDT (ortholog); valproic acid (ortholog).
Type: snorna
RefSeq Status: MODEL
Previously known as: AC126900.1
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81526,498,892 - 26,498,968 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1526,498,892 - 26,498,968 (-)EnsemblGRCr8
mRatBN7.21524,025,336 - 24,025,412 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,025,336 - 24,025,412 (-)EnsemblmRatBN7.2
Rnor_6.0 Ensembl1527,730,650 - 27,730,726 (-)NCBIrn6Rnor6.0
Cytogenetic Map15p14NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
DDT  (ISO)
valproic acid  (ISO)

References
Additional References at PubMed
PMID:32960468  


Genomics

Comparative Map Data
LOC120097276
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81526,498,892 - 26,498,968 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1526,498,892 - 26,498,968 (-)EnsemblGRCr8
mRatBN7.21524,025,336 - 24,025,412 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,025,336 - 24,025,412 (-)EnsemblmRatBN7.2
Rnor_6.0 Ensembl1527,730,650 - 27,730,726 (-)NCBIrn6Rnor6.0
Cytogenetic Map15p14NCBI
SNORD126
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,326,441 - 20,326,539 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,326,450 - 20,326,526 (-)Ensemblhg38GRCh38
GRCh371420,794,600 - 20,794,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361419,864,440 - 19,864,538 (-)NCBIBuild 36Build 36hg18NCBI36
Celera14655,747 - 655,845 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef14916,376 - 916,474 (-)NCBIHuRef
CHM1_11420,796,043 - 20,796,141 (-)NCBICHM1_1
T2T-CHM13v2.01414,523,334 - 14,523,432 (-)NCBIT2T-CHM13v2.0
LOC119869435
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1518,173,821 - 18,173,897 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01517,947,519 - 17,947,595 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11517,630,693 - 17,630,769 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01517,685,154 - 17,685,230 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01517,814,187 - 17,814,263 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152024860037896129Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151448116528469888Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005494496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000092204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1526,498,892 - 26,498,968 (-)Ensembl
mRatBN7.2 Ensembl1524,025,336 - 24,025,412 (-)Ensembl
RefSeq Acc Id: XR_005494496
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81526,498,892 - 26,498,968 (-)NCBI
mRatBN7.21524,025,336 - 24,025,412 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41210769 AgrOrtholog
BioCyc Gene G2FUF-14060 BioCyc
Ensembl Genes ENSRNOG00000058479 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000092204 ENTREZGENE
NCBI Gene LOC120097276 ENTREZGENE
PhenoGen LOC120097276 PhenoGen
RatGTEx ENSRNOG00000058479 RatGTEx
RNAcentral URS00006BB2A2 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120097276  small nucleolar RNA SNORD126  AC126900.1    Data merged from RGD:15011818 737654 PROVISIONAL
2021-01-27 LOC120097276  small nucleolar RNA SNORD126      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AC126900.1        Symbol and Name status set to provisional 45752 PROVISIONAL