Myl6bl1 (myosin light chain 6B like 1) - Rat Genome Database

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Gene: Myl6bl1 (myosin light chain 6B like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Myl6bl1
Name: myosin light chain 6B like 1
RGD ID: 41207417
Description: Predicted to enable calcium ion binding activity. Orthologous to human MYL6B (myosin light chain 6B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AC128207.1; LOC120093525; myosin light chain 6B
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,498,615 - 1,501,656 (-)NCBIGRCr8
mRatBN7.27914,079 - 918,598 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7914,081 - 917,294 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl72,909,704 - 2,912,491 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Myl6bl1
17 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000048453   ⟹   ENSRNOP00000041515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7914,081 - 917,294 (-)Ensembl
RefSeq Acc Id: XM_039080001   ⟹   XP_038935929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,498,615 - 1,501,158 (-)NCBI
mRatBN7.27914,079 - 916,871 (-)NCBI
RefSeq Acc Id: XM_039080004   ⟹   XP_038935932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,498,615 - 1,501,656 (-)NCBI
mRatBN7.27914,079 - 918,598 (-)NCBI
RefSeq Acc Id: XM_063264473   ⟹   XP_063120543
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,500,291 - 1,501,158 (-)NCBI
RefSeq Acc Id: XM_063264474   ⟹   XP_063120544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,500,291 - 1,501,656 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001419194 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935929 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935932 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120543 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120544 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000041515.3
RefSeq Acc Id: XP_038935932   ⟸   XM_039080004
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038935929   ⟸   XM_039080001
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000041515   ⟸   ENSRNOT00000048453
RefSeq Acc Id: XP_063120544   ⟸   XM_063264474
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063120543   ⟸   XM_063264473
- Peptide Label: isoform X3
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZHA7-F1-model_v2 AlphaFold D3ZHA7 1-207 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41207417 AgrOrtholog
BioCyc Gene G2FUF-35363 BioCyc
Ensembl Genes ENSRNOG00000028837 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000048453.5 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro Ca-Reg_Muscle_Contr_Cell_Proc UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene LOC120093525 ENTREZGENE
PANTHER MYOSIN LIGHT CHAIN 1, 3 UniProtKB/TrEMBL
  MYOSIN LIGHT CHAIN 6B UniProtKB/TrEMBL
PhenoGen Myl6bl1 PhenoGen
PROSITE EF_HAND_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000028837 RatGTEx
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A6KSE6 ENTREZGENE, UniProtKB/TrEMBL
  D3ZHA7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Myl6bl1  myosin light chain 6B like 1  LOC120093525  myosin light chain 6B  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC120093525  myosin light chain 6B  AC128207.1    Data merged from RGD:15003706 737654 PROVISIONAL
2021-01-27 LOC120093525  myosin light chain 6B      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AC128207.1        Symbol and Name status set to provisional 45752 PROVISIONAL