LOC120097273 (small nucleolar RNA SNORA26) - Rat Genome Database

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Gene: LOC120097273 (small nucleolar RNA SNORA26) Rattus norvegicus
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Symbol: LOC120097273
Name: small nucleolar RNA SNORA26
RGD ID: 41175466
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: Gm23593; predicted gene, 23593
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81535,594,682 - 35,594,800 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1535,594,682 - 35,594,800 (-)EnsemblGRCr8
mRatBN7.21531,479,110 - 31,479,228 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1531,479,110 - 31,479,228 (-)EnsemblmRatBN7.2
Rnor_6.0 Ensembl1537,596,465 - 37,596,583 (-)NCBIrn6Rnor6.0
Cytogenetic Map15p12NCBI
JBrowse:




References

Genomics

Comparative Map Data
LOC120097273
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81535,594,682 - 35,594,800 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1535,594,682 - 35,594,800 (-)EnsemblGRCr8
mRatBN7.21531,479,110 - 31,479,228 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1531,479,110 - 31,479,228 (-)EnsemblmRatBN7.2
Rnor_6.0 Ensembl1537,596,465 - 37,596,583 (-)NCBIrn6Rnor6.0
Cytogenetic Map15p12NCBI
LOC124900448
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,025,561 - 212,025,682 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1212,025,561 - 212,025,682 (+)Ensemblhg38GRCh38
Cytogenetic Map1q32.3NCBI
T2T-CHM13v2.01211,271,643 - 211,271,764 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in LOC120097273
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat


Expression

RNA-SEQ Expression

mesenchyme
renal system
2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005494492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000081687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1535,594,682 - 35,594,800 (-)Ensembl
mRatBN7.2 Ensembl1531,479,110 - 31,479,228 (-)Ensembl
RefSeq Acc Id: XR_005494492
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81535,594,682 - 35,594,800 (-)NCBI
mRatBN7.21531,479,110 - 31,479,228 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-13604 BioCyc
Ensembl Genes ENSRNOG00000054874 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000081687 ENTREZGENE
NCBI Gene LOC120097273 ENTREZGENE
PhenoGen LOC120097273 PhenoGen
RatGTEx ENSRNOG00000054874 RatGTEx
RNAcentral URS000064C4EB RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120097273  small nucleolar RNA SNORA26  Gm23593  predicted gene, 23593  Data merged from RGD:15009017 737654 PROVISIONAL
2021-01-27 LOC120097273  small nucleolar RNA SNORA26      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Gm23593  predicted gene, 23593      Symbol and Name status set to provisional 45752 PROVISIONAL