LOC120101204 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120101204 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120101204 (Ensembl: U6)
Name: U6 spliceosomal RNA
RGD ID: 41172133
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2229,849,669 - 29,849,772 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl229,849,669 - 29,849,772 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl228,606,707 - 28,606,810 (+)NCBIRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120101204
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2229,849,669 - 29,849,772 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl229,849,669 - 29,849,772 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl228,606,707 - 28,606,810 (+)NCBIRnor6.0rn6Rnor6.0
RNU6-873P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38387,742,543 - 87,742,649 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl387,742,543 - 87,742,649 (-)EnsemblGRCh38hg38GRCh38
GRCh37387,791,693 - 87,791,799 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3p11.2NCBI
CHM1_1387,744,412 - 87,744,518 (-)NCBICHM1_1
T2T-CHM13v2.0387,818,450 - 87,818,556 (-)NCBIT2T-CHM13v2.0
Gm22740
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395113,192,010 - 113,192,118 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5113,192,010 - 113,192,118 (+)EnsemblGRCm39 Ensembl
GRCm385113,044,144 - 113,044,252 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5113,044,144 - 113,044,252 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5FNCBI
LOC119864077
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1713,815,788 - 13,815,889 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01714,007,483 - 14,007,584 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1714,007,483 - 14,007,584 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11713,864,043 - 13,864,144 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01713,869,380 - 13,869,481 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01713,903,339 - 13,903,440 (-)NCBIUU_Cfam_GSD_1.0

Variants

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Variants in LOC120101204
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22699957143154682Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005501592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000088144
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl229,849,669 - 29,849,772 (+)Ensembl
RefSeq Acc Id: XR_005501592
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2229,849,669 - 29,849,772 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-54721 BioCyc
Ensembl Genes ENSRNOG00000057328 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000088144 ENTREZGENE
NCBI Gene LOC120101204 ENTREZGENE
PhenoGen LOC120101204 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120101204  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data Merged 737654 PROVISIONAL
2021-01-27 LOC120101204  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL