LOC120094650 (uncharacterized LOC120094650) - Rat Genome Database

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Gene: LOC120094650 (uncharacterized LOC120094650) Rattus norvegicus
Analyze
Symbol: LOC120094650
Name: uncharacterized LOC120094650
RGD ID: 41158924
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: AABR07067076.1
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8933,047,877 - 33,145,396 (+)NCBIGRCr8
GRCr8 Ensembl933,093,442 - 33,145,509 (+)EnsemblGRCr8 Ensembl
mRatBN7.2925,551,506 - 25,649,126 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl925,551,719 - 25,649,039 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl929,356,963 - 29,454,820 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map9q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC120094650
278 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9534647950346479Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)949664545496645Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9621499551214995Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9141763315Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)93125043265651574Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9534647950416711Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)949664545496645Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)92103143049025574Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)949664545496645Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9621499551214995Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)93145606157460683Rat


Expression

RNA-SEQ Expression

ectoderm
nervous system
sensory system
visual system
7 7 4 4

Sequence


Ensembl Acc Id: ENSRNOT00000077497
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl933,093,442 - 33,145,509 (+)Ensembl
mRatBN7.2 Ensembl925,551,719 - 25,649,039 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl933,093,505 - 33,097,365 (+)Ensembl
mRatBN7.2 Ensembl925,551,719 - 25,600,745 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl933,093,821 - 33,145,509 (+)Ensembl
mRatBN7.2 Ensembl925,551,719 - 25,649,039 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000169526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl933,093,446 - 33,145,509 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000171463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl933,093,446 - 33,133,458 (+)Ensembl
RefSeq Acc Id: XR_005489067
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,047,877 - 33,145,396 (+)NCBI
mRatBN7.2925,551,506 - 25,649,126 (+)NCBI
RefSeq Acc Id: XR_005489069
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,047,885 - 33,145,396 (+)NCBI
mRatBN7.2925,551,506 - 25,649,126 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-27985 BioCyc
Ensembl Genes ENSRNOG00000058900 Ensembl
NCBI Gene LOC120094650 ENTREZGENE
PhenoGen LOC120094650 PhenoGen
RatGTEx ENSRNOG00000058900 RatGTEx
RNAcentral URS00022B11A8 RNACentral
  URS00022B76D7 RNACentral
  URS00022B7FFD RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120094650  uncharacterized LOC120094650  AABR07067076.1    Data merged from RGD:15012143 737654 PROVISIONAL
2021-01-27 LOC120094650  uncharacterized LOC120094650      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07067076.1        Symbol and Name status set to provisional 45752 PROVISIONAL