Rnu6-841p (RNA, U6 small nuclear 841, pseudogene) - Rat Genome Database

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Gene: Rnu6-841p (RNA, U6 small nuclear 841, pseudogene) Rattus norvegicus
Analyze
Symbol: Rnu6-841p (Ensembl: Rnu6-841)
Name: RNA, U6 small nuclear 841, pseudogene (Ensembl:RNA, U6 small nuclear 841)
RGD ID: 41156540
Description: Orthologous to human RNU6-841P (RNA, U6 small nuclear 841, pseudogene).
Type: snrna
RefSeq Status: MODEL
Previously known as: LOC120101947; RNA, U6 small nuclear 841; Rnu6-841; U6; U6 spliceosomal RNA
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83101,793,655 - 101,793,757 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3101,793,655 - 101,793,757 (+)EnsemblGRCr8
mRatBN7.2381,338,422 - 81,338,524 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl381,338,422 - 81,338,524 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl384,387,584 - 84,387,686 (+)NCBIrn6Rnor6.0
Cytogenetic Map3q31NCBI
JBrowse:




References

Genomics

Comparative Map Data
Rnu6-841p
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83101,793,655 - 101,793,757 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3101,793,655 - 101,793,757 (+)EnsemblGRCr8
mRatBN7.2381,338,422 - 81,338,524 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl381,338,422 - 81,338,524 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl384,387,584 - 84,387,686 (+)NCBIrn6Rnor6.0
Cytogenetic Map3q31NCBI
RNU6-841P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,764,525 - 49,764,630 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,764,524 - 49,764,630 (-)Ensemblhg38GRCh38
GRCh371950,267,782 - 50,267,887 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19q13.33NCBI
CHM1_11950,269,568 - 50,269,673 (-)NCBICHM1_1
T2T-CHM13v2.01952,764,669 - 52,764,774 (-)NCBIT2T-CHM13v2.0
Gm24925
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391650,740,905 - 50,741,011 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1650,740,905 - 50,741,011 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381650,920,542 - 50,920,648 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1650,920,542 - 50,920,648 (-)Ensemblmm10GRCm38
Cytogenetic Map16B5NCBI
LOC119869651
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1643,334,589 - 43,334,691 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01645,039,239 - 45,039,341 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1645,039,239 - 45,039,341 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11643,026,365 - 43,026,467 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01643,594,485 - 43,594,587 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01643,735,911 - 43,736,013 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0

Variants

.
Variants in Rnu6-841p
2 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)373376539118376539Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)380800231114297550Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)36113434889115068Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005503000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000089802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3101,793,655 - 101,793,757 (+)Ensembl
mRatBN7.2 Ensembl381,338,422 - 81,338,524 (+)Ensembl
RefSeq Acc Id: XR_005503000
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83101,793,655 - 101,793,757 (+)NCBI
mRatBN7.2381,338,422 - 81,338,524 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41156540 AgrOrtholog
BioCyc Gene G2FUF-48638 BioCyc
Ensembl Genes ENSRNOG00000056211 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000089802 ENTREZGENE
NCBI Gene LOC120101947 ENTREZGENE
PhenoGen Rnu6-841p PhenoGen
RatGTEx ENSRNOG00000056211 RatGTEx
RNAcentral URS00006AC858 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-07-08 Rnu6-841p  RNA, U6 small nuclear 841, pseudogene  Rnu6-841  RNA, U6 small nuclear 841  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-17 Rnu6-841  RNA, U6 small nuclear 841  LOC120101947  U6 spliceosomal RNA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120101947  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15010064 737654 PROVISIONAL
2021-01-27 LOC120101947  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL