LOC120101733 (uncharacterized LOC120101733) - Rat Genome Database

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Gene: LOC120101733 (uncharacterized LOC120101733) Rattus norvegicus
Analyze
Symbol: LOC120101733
Name: uncharacterized LOC120101733
RGD ID: 41119407
Description: Predicted to enable ATP binding activity and protein serine/threonine kinase activity.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sperm motility kinase X-like
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83158,837,085 - 158,865,793 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.23138,389,404 - 138,405,290 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3138,381,970 - 138,405,275 (+)EnsemblmRatBN7.2
Cytogenetic Map3q41NCBI
JBrowse:




References

Genomics

Variants

.
Variants in LOC120101733
202 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3141508991166376254Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3117537367162537367Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3141508991177728348Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)3116188400161188400Rat


Expression

RNA-SEQ Expression

mesenchyme
renal system
reproductive system
4 4 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063285012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000117873   ⟹   ENSRNOP00000083572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3138,381,970 - 138,405,275 (+)Ensembl
RefSeq Acc Id: XM_063285012   ⟹   XP_063141082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285013   ⟹   XP_063141083
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285014   ⟹   XP_063141084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285015   ⟹   XP_063141085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285016   ⟹   XP_063141086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285017   ⟹   XP_063141087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285018   ⟹   XP_063141088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285019   ⟹   XP_063141089
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285020   ⟹   XP_063141090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285021   ⟹   XP_063141091
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285023   ⟹   XP_063141093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285024   ⟹   XP_063141094
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285025   ⟹   XP_063141095
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285026   ⟹   XP_063141096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285027   ⟹   XP_063141097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285028   ⟹   XP_063141098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285029   ⟹   XP_063141099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,085 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285030   ⟹   XP_063141100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285031   ⟹   XP_063141101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285032   ⟹   XP_063141102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285034   ⟹   XP_063141104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285035   ⟹   XP_063141105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285036   ⟹   XP_063141106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285037   ⟹   XP_063141107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285038   ⟹   XP_063141108
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
RefSeq Acc Id: XM_063285039   ⟹   XP_063141109
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83158,837,092 - 158,865,793 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063141082 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141083 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141084 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141085 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141086 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141087 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141088 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141089 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141090 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141091 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141093 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141094 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141095 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141096 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141097 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141098 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141099 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141100 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141101 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141102 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141104 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141105 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141106 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141107 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141108 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141109 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_063141099   ⟸   XM_063285029
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141093   ⟸   XM_063285023
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141091   ⟸   XM_063285021
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141097   ⟸   XM_063285027
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141100   ⟸   XM_063285030
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141098   ⟸   XM_063285028
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141084   ⟸   XM_063285014
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141106   ⟸   XM_063285036
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141082   ⟸   XM_063285012
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141102   ⟸   XM_063285032
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141085   ⟸   XM_063285015
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141101   ⟸   XM_063285031
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141109   ⟸   XM_063285039
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141083   ⟸   XM_063285013
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141086   ⟸   XM_063285016
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141107   ⟸   XM_063285037
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141104   ⟸   XM_063285034
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141090   ⟸   XM_063285020
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141089   ⟸   XM_063285019
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141095   ⟸   XM_063285025
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141096   ⟸   XM_063285026
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141087   ⟸   XM_063285017
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141094   ⟸   XM_063285024
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141088   ⟸   XM_063285018
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141105   ⟸   XM_063285035
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141108   ⟸   XM_063285038
- UniProtKB: A0A8I6G980 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000083572   ⟸   ENSRNOT00000117873

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-47442 BioCyc
Ensembl Genes ENSRNOG00000064299 Ensembl
NCBI Gene LOC120101733 ENTREZGENE
PhenoGen LOC120101733 PhenoGen
RatGTEx ENSRNOG00000064299 RatGTEx
UniProt A0A8I6G980 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120101733  uncharacterized LOC120101733      Symbol and Name status set to provisional 70820 PROVISIONAL