LOC120094561 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120094561 (U6 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120094561
Name: U6 spliceosomal RNA
RGD ID: 41115508
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: U6
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr889,343,713 - 9,343,813 (+)NCBIGRCr8
mRatBN7.281,058,757 - 1,058,857 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl81,058,757 - 1,058,857 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl81,058,757 - 1,058,857 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl81,047,235 - 1,047,335 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map8q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)813402289Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000077114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl81,058,757 - 1,058,857 (+)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-31842 BioCyc
Ensembl Genes ENSRNOG00000053742 Ensembl
NCBI Gene LOC120094561 ENTREZGENE
PhenoGen LOC120094561 PhenoGen
RatGTEx ENSRNOG00000053742 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120094561  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15008148 737654 PROVISIONAL
2021-01-27 LOC120094561  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL