LOC120095718 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120095718 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120095718
Name: U6 spliceosomal RNA
RGD ID: 41115113
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21119,578,380 - 19,578,477 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1119,578,380 - 19,578,477 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl1119,578,380 - 19,578,477 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1119,699,972 - 19,700,086 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120095718
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21119,578,380 - 19,578,477 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1119,578,380 - 19,578,477 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl1119,578,380 - 19,578,477 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1119,699,972 - 19,700,086 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map11q11NCBI
RNU6-782P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381915,145,215 - 15,145,318 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1915,145,215 - 15,145,318 (+)EnsemblGRCh38hg38GRCh38
GRCh371915,256,026 - 15,256,129 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19p13.12NCBI
CHM1_11915,255,510 - 15,255,613 (+)NCBICHM1_1
T2T-CHM13v2.01915,270,154 - 15,270,257 (+)NCBIT2T-CHM13v2.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)111283104625121472Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
1600394Edcs1Endometrial carcinoma susceptibility QTL12.90.04uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)111897620824697116Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JACYVU010000221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000082804
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1119,578,380 - 19,578,477 (-)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22113 BioCyc
Ensembl Genes ENSRNOG00000060895 Ensembl, ENTREZGENE
NCBI Gene LOC120095718 ENTREZGENE
PhenoGen LOC120095718 PhenoGen
RatGTEx ENSRNOG00000060895 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120095718  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15013677 737654 PROVISIONAL
2021-01-27 LOC120095718  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL