LOC120097308 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120097308 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120097308
Name: U6 spliceosomal RNA
RGD ID: 41086981
Description: Orthologous to human RNU6-1011P (RNA, U6 small nuclear 1011, pseudogene).
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81565,248,958 - 65,249,060 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1565,248,958 - 65,249,060 (+)EnsemblGRCr8
mRatBN7.21558,840,017 - 58,840,119 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1558,840,017 - 58,840,119 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl1566,246,570 - 66,246,672 (+)NCBIrn6Rnor6.0
Cytogenetic Map15q12NCBI
JBrowse:




References

Genomics

Comparative Map Data
LOC120097308
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81565,248,958 - 65,249,060 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1565,248,958 - 65,249,060 (+)EnsemblGRCr8
mRatBN7.21558,840,017 - 58,840,119 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1558,840,017 - 58,840,119 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl1566,246,570 - 66,246,672 (+)NCBIrn6Rnor6.0
Cytogenetic Map15q12NCBI
RNU6-1011P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388103,384,961 - 103,385,067 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8103,384,961 - 103,385,067 (+)Ensemblhg38GRCh38
GRCh378104,397,189 - 104,397,295 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map8q22.3NCBI
CHM1_18104,437,989 - 104,438,095 (+)NCBICHM1_1
T2T-CHM13v2.08104,512,601 - 104,512,707 (+)NCBIT2T-CHM13v2.0
Gm23678
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X19,628,907 - 19,629,013 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX19,628,907 - 19,629,013 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X19,762,668 - 19,762,774 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX19,762,668 - 19,762,774 (-)Ensemblmm10GRCm38
Cytogenetic MapXA1.3NCBI
LOC119864339
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1821,330,453 - 21,330,559 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01822,106,846 - 22,106,952 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1822,106,846 - 22,106,952 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11821,743,361 - 21,743,467 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01821,278,953 - 21,279,059 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01821,933,067 - 21,933,173 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)155284790873690657Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005494518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000092422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1565,248,958 - 65,249,060 (+)Ensembl
mRatBN7.2 Ensembl1558,840,017 - 58,840,119 (+)Ensembl
RefSeq Acc Id: XR_005494518
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81565,248,958 - 65,249,060 (+)NCBI
mRatBN7.21558,840,017 - 58,840,119 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41086981 AgrOrtholog
BioCyc Gene G2FUF-12957 BioCyc
Ensembl Genes ENSRNOG00000062007 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000092422 ENTREZGENE
NCBI Gene LOC120097308 ENTREZGENE
PhenoGen LOC120097308 PhenoGen
RatGTEx ENSRNOG00000062007 RatGTEx
RNAcentral URS000064EDC5 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120097308  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15014520 737654 PROVISIONAL
2021-01-27 LOC120097308  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL