LOC120098057 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120098057 (U6 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120098057
Name: U6 spliceosomal RNA
RGD ID: 41071758
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81717,999,906 - 18,000,013 (-)NCBIGRCr8
mRatBN7.21717,793,654 - 17,793,761 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1717,793,654 - 17,793,761 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1718,179,240 - 18,179,347 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120098057
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81717,999,906 - 18,000,013 (-)NCBIGRCr8
mRatBN7.21717,793,654 - 17,793,761 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1717,793,654 - 17,793,761 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1718,179,240 - 18,179,347 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map17p14NCBI
RNU6-707P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X48,153,995 - 48,154,074 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX48,153,980 - 48,154,074 (-)EnsemblGRCh38hg38GRCh38
GRCh37X48,013,423 - 48,013,502 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXp11.23NCBI
CHM1_1X48,044,822 - 48,044,901 (-)NCBICHM1_1
T2T-CHM13v2.0X47,564,146 - 47,564,225 (-)NCBIT2T-CHM13v2.0
Gm22975
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39274,454,986 - 74,455,092 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl274,454,986 - 74,455,092 (+)EnsemblGRCm39 Ensembl
GRCm38274,624,642 - 74,624,748 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl274,624,642 - 74,624,748 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map2C3NCBI
LOC119873827
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1012,787,973 - 12,788,092 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01012,982,226 - 12,982,345 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1012,982,226 - 12,982,345 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11012,847,945 - 12,848,064 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01013,094,469 - 13,094,588 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01013,218,574 - 13,218,693 (+)NCBIUU_Cfam_GSD_1.0

Variants

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Variants in LOC120098057
2 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17211514921881669Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)17429913021293263Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
1582199Insul5Insulin level QTL 53.40.0119blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)17920136523653323Rat
1582208Kidm32Kidney mass QTL 323.90.0018kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17920136523653323Rat
1582224Epfw4Epididymal fat weight QTL 43.50.0058epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)17920136523653323Rat
1582225Bw67Body weight QTL 676.20.0001body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582226Bw64Body weight QTL 644.20.0017body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582241Bw70Body weight QTL 704.60.0003body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582245Bw73Body weight QTL 734.60.0004body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582258Bw76Body weight QTL 764.60.0005body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17999128640540197Rat
1549900Iddm20Insulin dependent diabetes mellitus QTL 203.7pancreas integrity trait (VT:0010560)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)171398677321975515Rat
1331720Rf43Renal function QTL 432.881kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)171533061323017269Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005495984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000091173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1717,793,654 - 17,793,761 (-)Ensembl
RefSeq Acc Id: XR_005495984
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81717,999,906 - 18,000,013 (-)NCBI
mRatBN7.21717,793,654 - 17,793,761 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-9901 BioCyc
Ensembl Genes ENSRNOG00000056205 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000091173 ENTREZGENE
NCBI Gene LOC120098057 ENTREZGENE
PhenoGen LOC120098057 PhenoGen
RatGTEx ENSRNOG00000056205 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120098057  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15010061 737654 PROVISIONAL
2021-01-27 LOC120098057  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL