LOC120097090 (uncharacterized LOC120097090) - Rat Genome Database

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Gene: LOC120097090 (uncharacterized LOC120097090) Rattus norvegicus
Analyze
Symbol: LOC120097090
Name: uncharacterized LOC120097090
RGD ID: 41052703
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: AABR07019442.1; null
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815104,092,599 - 104,094,772 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl15104,066,846 - 104,094,905 (+)EnsemblGRCr8
mRatBN7.21597,685,776 - 97,687,881 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1597,686,537 - 97,687,867 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl15105,941,836 - 105,943,359 (+)Ensemblrn6Rnor6.0
Cytogenetic Map15q24NCBI
JBrowse:




References

Genomics

Variants

.
Variants in LOC120097090
11 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat


Expression

RNA-SEQ Expression

appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
1 7 11 1 24 12 5 16 12 29 3 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005494310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000090685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl15104,091,669 - 104,094,758 (+)Ensembl
mRatBN7.2 Ensembl1597,686,537 - 97,687,867 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl15104,093,276 - 104,094,736 (+)Ensembl
mRatBN7.2 Ensembl1597,686,537 - 97,687,867 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000139273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl15104,091,731 - 104,092,905 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000141860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl15104,066,846 - 104,094,905 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000142373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl15104,091,674 - 104,094,758 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000156009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl15104,091,686 - 104,094,758 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000164193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl15104,091,676 - 104,094,758 (+)Ensembl
RefSeq Acc Id: XR_005494310
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815104,092,599 - 104,094,772 (+)NCBI
mRatBN7.21597,685,776 - 97,687,881 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12390 BioCyc
Ensembl Genes ENSRNOG00000059922 Ensembl
NCBI Gene LOC120097090 ENTREZGENE
PhenoGen LOC120097090 PhenoGen
RatGTEx ENSRNOG00000059922 RatGTEx
RNAcentral URS00022B1D76 RNACentral
  URS00022B3F80 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-25 LOC120097090  uncharacterized LOC120097090  AABR07019442.1    Data merged from RGD:15012927 737654 PROVISIONAL
2021-01-27 LOC120097090  uncharacterized LOC120097090      Symbol and Name status set to provisional 70820 PROVISIONAL
2020-02-07 AABR07019442.1    AABR07019442.2    Symbol and/or name change 19259462 PROVISIONAL