Rnu6-906p (RNA, U6 small nuclear 906, pseudogene) - Rat Genome Database

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Gene: Rnu6-906p (RNA, U6 small nuclear 906, pseudogene) Rattus norvegicus
Analyze
Symbol: Rnu6-906p (Ensembl: Rnu6-897)
Name: RNA, U6 small nuclear 906, pseudogene (Ensembl:RNA, U6 small nuclear 897)
RGD ID: 41046177
Description: Orthologous to human RNU6-906P (RNA, U6 small nuclear 906, pseudogene).
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: LOC120101980; RNA, U6 small nuclear 897; Rnu6-897; U6; U6 spliceosomal RNA
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83141,961,400 - 141,961,494 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3141,961,400 - 141,961,494 (+)EnsemblGRCr8
mRatBN7.23121,508,617 - 121,508,711 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3121,508,617 - 121,508,711 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3121,508,617 - 121,508,711 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl3127,176,622 - 127,176,686 (+)NCBIrn6Rnor6.0
Cytogenetic Map3q36NCBI
JBrowse:




References

Genomics

Comparative Map Data
Rnu6-906p
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83141,961,400 - 141,961,494 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3141,961,400 - 141,961,494 (+)EnsemblGRCr8
mRatBN7.23121,508,617 - 121,508,711 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3121,508,617 - 121,508,711 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3121,508,617 - 121,508,711 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl3127,176,622 - 127,176,686 (+)NCBIrn6Rnor6.0
Cytogenetic Map3q36NCBI
RNU6-906P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386111,008,270 - 111,008,376 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6146,639,700 - 146,639,769 (+)Ensemblhg38GRCh38
GRCh376111,329,473 - 111,329,579 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6q21NCBI
CHM1_16111,592,547 - 111,592,653 (-)NCBICHM1_1
T2T-CHM13v2.06112,186,888 - 112,186,994 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in Rnu6-906p
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)384091273129091273Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)3115638168135181505Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3112287552135181505Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000078513
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3141,961,400 - 141,961,494 (+)Ensembl
mRatBN7.2 Ensembl3121,508,617 - 121,508,711 (+)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41046177 AgrOrtholog
BioCyc Gene G2FUF-47748 BioCyc
Ensembl Genes ENSRNOG00000057196 Ensembl, ENTREZGENE
NCBI Gene LOC120101980 ENTREZGENE
PhenoGen Rnu6-906p PhenoGen
RatGTEx ENSRNOG00000057196 RatGTEx
RNAcentral URS000065062D RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-07-08 Rnu6-906p  RNA, U6 small nuclear 906, pseudogene  Rnu6-897  RNA, U6 small nuclear 897  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-17 Rnu6-897  RNA, U6 small nuclear 897  LOC120101980  U6 spliceosomal RNA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120101980  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15010818 737654 PROVISIONAL
2021-01-27 LOC120101980  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL